Wall clock time and date at job start Sun Mar 7 2021 13:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47248 * 2 1 4 4 C 1.50708 * 109.47043 * 240.00014 * 2 1 3 5 5 C 1.34849 * 125.88737 * 120.20092 * 4 2 1 6 6 C 1.40899 * 107.40982 * 180.25597 * 5 4 2 7 7 C 1.34845 * 107.41955 * 359.73389 * 6 5 4 8 8 C 1.50697 * 125.88970 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47134 * 274.97565 * 8 7 6 10 10 O 1.21284 * 119.99764 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00117 * 179.97438 * 9 8 7 12 12 C 1.46508 * 120.00159 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47397 * 180.02562 * 12 11 9 14 14 H 1.09007 * 112.84888 * 316.19649 * 13 12 11 15 15 C 1.53781 * 113.61537 * 87.50103 * 13 12 11 16 16 C 1.53789 * 87.08018 * 139.98313 * 15 13 12 17 17 H 1.08995 * 113.69405 * 220.01355 * 16 15 13 18 18 N 1.46500 * 113.61085 * 89.11675 * 16 15 13 19 19 C 1.34424 * 126.82688 * 347.21272 * 18 16 15 20 20 N 1.30831 * 108.07815 * 179.89431 * 19 18 16 21 21 C 1.33241 * 109.82916 * 0.37957 * 20 19 18 22 22 N 1.30710 * 108.94620 * 359.76441 * 21 20 19 23 23 C 1.53784 * 113.61576 * 185.00524 * 13 12 11 24 24 N 1.36341 * 125.88720 * 299.99852 * 4 2 1 25 25 H 0.96693 * 114.00167 * 300.00090 * 1 2 3 26 26 H 1.08997 * 109.47200 * 120.00372 * 2 1 3 27 27 H 1.48501 * 110.00257 * 300.00131 * 3 2 1 28 28 H 1.48500 * 109.99992 * 61.31688 * 3 2 1 29 29 H 1.07996 * 126.29737 * 359.97438 * 5 4 2 30 30 H 1.07997 * 126.28611 * 179.74054 * 6 5 4 31 31 H 1.09002 * 109.47064 * 34.97337 * 8 7 6 32 32 H 1.08995 * 109.47287 * 154.97568 * 8 7 6 33 33 H 0.97006 * 120.00576 * 0.02562 * 11 9 8 34 34 H 1.08996 * 109.47264 * 300.00465 * 12 11 9 35 35 H 1.09005 * 109.46610 * 60.00145 * 12 11 9 36 36 H 1.09000 * 113.61687 * 254.52909 * 15 13 12 37 37 H 1.09000 * 113.60961 * 25.43570 * 15 13 12 38 38 H 1.08001 * 125.95877 * 0.03661 * 19 18 16 39 39 H 1.07995 * 125.52759 * 179.79685 * 21 20 19 40 40 H 1.09003 * 113.61023 * 334.56180 * 23 13 12 41 41 H 1.08994 * 113.61262 * 105.38564 * 23 13 12 42 42 H 0.97001 * 125.64231 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7130 -0.1738 -2.1894 6 6 2.9417 -1.1736 -3.1554 7 6 2.2961 -2.2848 -2.7470 8 6 2.2647 -3.6053 -3.4725 9 6 1.1685 -3.5845 -4.5063 10 8 0.4801 -2.5950 -4.6404 11 7 0.9530 -4.6655 -5.2818 12 6 -0.1131 -4.6455 -6.2865 13 6 -0.1450 -5.9861 -7.0231 14 1 0.8484 -6.3442 -7.2935 15 6 -1.0178 -7.0476 -6.3331 16 6 -1.4902 -7.4588 -7.7377 17 1 -2.5534 -7.6930 -7.7911 18 7 -0.6498 -8.4830 -8.3629 19 6 0.5635 -8.8906 -7.9523 20 7 0.9797 -9.8192 -8.7746 21 6 0.0670 -10.0249 -9.7233 22 7 -0.9493 -9.2300 -9.5140 23 6 -1.1517 -6.0269 -8.1850 24 7 1.6771 -2.0077 -1.5642 25 1 -0.3933 0.4417 0.7650 26 1 1.7924 -0.5139 0.8899 27 1 1.5615 2.4679 -1.2085 28 1 1.5879 2.4585 1.2242 29 1 3.0902 0.8379 -2.2148 30 1 3.5268 -1.0692 -4.0572 31 1 3.2235 -3.7733 -3.9629 32 1 2.0761 -4.4074 -2.7590 33 1 1.5032 -5.4571 -5.1743 34 1 -1.0719 -4.4782 -5.7957 35 1 0.0749 -3.8430 -6.9998 36 1 -0.4435 -7.8203 -5.8220 37 1 -1.8086 -6.6263 -5.7124 38 1 1.1002 -8.5182 -7.0922 39 1 0.1527 -10.7338 -10.5335 40 1 -1.9791 -5.3266 -8.0705 41 1 -0.6854 -5.9741 -9.1687 42 1 1.1406 -2.6294 -1.0479 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946164_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:22:42 Heat of formation + Delta-G solvation = 100.585964 kcal Electronic energy + Delta-G solvation = -25403.621202 eV Core-core repulsion = 21582.096962 eV Total energy + Delta-G solvation = -3821.524240 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.22048 -42.29204 -40.81530 -39.87957 -37.85893 -35.71919 -33.50189 -33.00832 -32.14099 -31.91980 -30.02986 -28.47506 -26.95820 -25.46223 -24.61011 -23.08380 -22.40373 -21.91465 -21.31873 -21.06832 -20.54637 -18.61982 -18.40839 -18.00458 -17.85051 -17.12219 -16.76127 -16.49737 -16.16042 -16.02346 -15.75176 -15.43833 -15.03151 -15.01015 -14.68724 -14.60168 -14.41459 -14.04279 -13.92205 -13.58427 -13.48650 -13.33367 -13.21154 -13.00325 -12.86233 -12.44031 -12.13458 -11.98079 -11.74167 -11.64365 -11.05140 -10.96767 -10.86392 -10.62876 -10.57855 -10.08744 -9.78367 -8.92804 -4.89128 0.61760 1.05386 1.27705 1.31900 1.61495 1.65961 1.86623 1.95157 1.99146 2.32273 2.51793 3.10494 3.27779 3.36909 3.43981 3.52073 3.65992 3.72085 3.88555 3.92491 4.09665 4.12031 4.18451 4.25574 4.31955 4.39109 4.50281 4.53216 4.65856 4.67147 4.68119 4.75589 4.82535 4.90267 4.91435 5.14405 5.25620 5.30649 5.32042 5.41078 5.46577 5.90451 6.01709 6.14229 6.52035 6.56593 6.70759 7.07299 7.30566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.566 6.566 2 C -0.062 4.062 3 Si 0.790 3.210 4 C 0.017 3.983 5 C -0.206 4.206 6 C -0.202 4.202 7 C 0.034 3.966 8 C -0.066 4.066 9 C 0.508 3.492 10 O -0.583 6.583 11 N -0.714 5.714 12 C 0.134 3.866 13 C -0.113 4.113 14 H 0.112 0.888 15 C -0.120 4.120 16 C 0.117 3.883 17 H 0.113 0.887 18 N -0.363 5.363 19 C 0.258 3.742 20 N -0.578 5.578 21 C 0.190 3.810 22 N -0.354 5.354 23 C -0.135 4.135 24 N -0.537 5.537 25 H 0.397 0.603 26 H 0.098 0.902 27 H -0.310 1.310 28 H -0.278 1.278 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.420 0.580 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.256 0.744 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -3.253 5.522 7.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.171 4.171 3 Si 0.694 3.306 4 C -0.096 4.096 5 C -0.231 4.231 6 C -0.226 4.226 7 C -0.080 4.080 8 C -0.106 4.106 9 C 0.295 3.705 10 O -0.462 6.462 11 N -0.368 5.368 12 C 0.010 3.990 13 C -0.131 4.131 14 H 0.130 0.870 15 C -0.158 4.158 16 C 0.014 3.986 17 H 0.131 0.869 18 N -0.154 5.154 19 C -0.038 4.038 20 N -0.306 5.306 21 C -0.113 4.113 22 N -0.182 5.182 23 C -0.174 4.174 24 N -0.132 5.132 25 H 0.247 0.753 26 H 0.116 0.884 27 H -0.238 1.238 28 H -0.204 1.204 29 H 0.165 0.835 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.151 0.849 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.141 0.859 38 H 0.271 0.729 39 H 0.252 0.748 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 2.619 -2.252 4.574 5.732 hybrid contribution -1.444 -0.423 0.385 1.553 sum 1.176 -2.675 4.959 5.756 Atomic orbital electron populations 1.86561 1.18909 1.80841 1.51299 1.24691 0.83720 1.12076 0.96584 0.93589 0.90217 0.70706 0.76088 1.19887 1.04774 0.85444 0.99542 1.20867 1.05693 1.00563 0.95950 1.20843 1.07208 0.93124 1.01442 1.19968 1.01352 0.97789 0.88910 1.20267 1.00017 0.93825 0.96469 1.21066 0.84851 0.82390 0.82219 1.90784 1.50250 1.34725 1.70447 1.45814 1.36593 1.17276 1.37107 1.21233 0.90882 0.96892 0.90006 1.22864 0.99984 0.94451 0.95822 0.86970 1.23525 1.00816 0.98382 0.93095 1.22434 0.95169 0.85600 0.95407 0.86932 1.50379 1.15341 1.29715 1.19940 1.26716 0.85251 0.92086 0.99726 1.70599 1.32362 1.20095 1.07515 1.26535 0.87218 0.98442 0.99062 1.78036 1.25463 1.11330 1.03359 1.23378 1.00493 0.94894 0.98618 1.41844 1.40939 1.11006 1.19422 0.75258 0.88390 1.23808 1.20408 0.83457 0.83978 0.83600 0.84909 0.74231 0.91698 0.92919 0.88019 0.85935 0.72865 0.74839 0.86607 0.91796 0.74319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.27 12.86 -148.98 -1.92 -4.19 16 2 C -0.06 -0.07 3.07 71.24 0.22 0.15 16 3 Si 0.79 -0.04 30.58 68.60 2.10 2.05 16 4 C 0.02 0.09 6.54 41.08 0.27 0.36 16 5 C -0.21 -1.36 9.37 22.14 0.21 -1.15 16 6 C -0.20 -1.20 10.76 22.14 0.24 -0.96 16 7 C 0.03 0.09 5.66 41.08 0.23 0.32 16 8 C -0.07 0.42 6.24 29.10 0.18 0.60 16 9 C 0.51 -0.19 7.82 87.66 0.69 0.50 16 10 O -0.58 -7.07 16.03 -3.04 -0.05 -7.12 16 11 N -0.71 5.74 5.56 -463.05 -2.57 3.17 16 12 C 0.13 -0.83 5.51 86.38 0.48 -0.36 16 13 C -0.11 1.24 3.34 -10.27 -0.03 1.21 16 14 H 0.11 -1.44 7.01 -2.38 -0.02 -1.46 16 15 C -0.12 1.52 6.89 31.12 0.21 1.73 16 16 C 0.12 -0.72 5.21 45.52 0.24 -0.49 16 17 H 0.11 -0.60 8.14 -2.39 -0.02 -0.62 16 18 N -0.36 0.12 3.81 -328.92 -1.25 -1.14 16 19 C 0.26 -0.62 10.82 180.36 1.95 1.33 16 20 N -0.58 -2.53 11.19 -204.01 -2.28 -4.82 16 21 C 0.19 0.85 13.03 180.77 2.36 3.21 16 22 N -0.35 -2.24 12.70 -61.25 -0.78 -3.02 16 23 C -0.13 0.95 7.44 31.12 0.23 1.18 16 24 N -0.54 -1.70 6.08 -171.12 -1.04 -2.74 16 25 H 0.40 -1.88 8.74 -74.06 -0.65 -2.52 16 26 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 27 H -0.31 -2.95 7.11 99.48 0.71 -2.25 16 28 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 29 H 0.15 0.53 6.22 -2.91 -0.02 0.51 16 30 H 0.14 0.49 8.06 -2.91 -0.02 0.47 16 31 H 0.15 -1.73 8.14 -2.39 -0.02 -1.75 16 32 H 0.13 -1.71 8.14 -2.39 -0.02 -1.73 16 33 H 0.42 -6.61 8.47 -92.70 -0.79 -7.40 16 34 H 0.06 -0.26 7.84 -2.39 -0.02 -0.28 16 35 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 36 H 0.10 -1.58 7.04 -2.39 -0.02 -1.60 16 37 H 0.12 -1.68 7.89 -2.39 -0.02 -1.69 16 38 H 0.26 -3.28 6.74 -2.91 -0.02 -3.29 16 39 H 0.24 -0.37 8.06 -2.91 -0.02 -0.39 16 40 H 0.12 -0.97 8.10 -2.39 -0.02 -0.99 16 41 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.42 -0.43 8.96 -92.71 -0.83 -1.26 16 Total: 0.00 -35.63 356.55 -1.47 -37.10 By element: Atomic # 1 Polarization: -25.79 SS G_CDS: -1.14 Total: -26.93 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.46 Total: 7.63 kcal Atomic # 7 Polarization: -0.62 SS G_CDS: -7.93 Total: -8.54 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -1.96 Total: -11.31 kcal Atomic # 14 Polarization: -0.04 SS G_CDS: 2.10 Total: 2.05 kcal Total: -35.63 -1.47 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.691 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds