Wall clock time and date at job start Sun Mar 7 2021 13:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86299 * 109.47232 * 2 1 4 4 C 1.50705 * 109.46380 * 240.00263 * 2 1 3 5 5 C 1.38709 * 120.02672 * 285.02049 * 4 2 1 6 6 O 1.35895 * 120.05826 * 359.96119 * 5 4 2 7 7 C 1.42904 * 117.00128 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47031 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00089 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99605 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99557 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46802 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.85130 * 43.80375 * 12 11 10 14 14 C 1.53781 * 113.61052 * 174.99820 * 12 11 10 15 15 C 1.53776 * 87.07943 * 139.97897 * 14 12 11 16 16 H 1.09007 * 113.61587 * 219.92979 * 15 14 12 17 17 N 1.46509 * 113.61781 * 89.11464 * 15 14 12 18 18 C 1.34425 * 126.82189 * 274.71229 * 17 15 14 19 19 N 1.30831 * 108.07815 * 179.88939 * 18 17 15 20 20 C 1.33246 * 109.82479 * 0.38044 * 19 18 17 21 21 N 1.30705 * 108.94905 * 359.76232 * 20 19 18 22 22 C 1.53774 * 87.08251 * 334.56508 * 15 14 12 23 23 C 1.38759 * 119.88803 * 179.97438 * 5 4 2 24 24 C 1.38126 * 119.94113 * 359.97438 * 23 5 4 25 25 C 1.38290 * 120.05768 * 359.97438 * 24 23 5 26 26 C 1.38164 * 120.02639 * 105.00360 * 4 2 1 27 27 H 0.96700 * 113.99711 * 59.98948 * 1 2 3 28 28 H 1.08998 * 109.47252 * 120.01022 * 2 1 3 29 29 H 1.48492 * 110.00029 * 60.00385 * 3 2 1 30 30 H 1.48505 * 109.99635 * 181.32058 * 3 2 1 31 31 H 1.09000 * 109.46735 * 300.00020 * 7 6 5 32 32 H 1.09002 * 109.46782 * 59.99820 * 7 6 5 33 33 H 0.97002 * 120.00324 * 359.97438 * 10 8 7 34 34 H 1.09000 * 109.47300 * 299.99482 * 11 10 8 35 35 H 1.08994 * 109.47756 * 59.99856 * 11 10 8 36 36 H 1.08998 * 113.61450 * 254.52444 * 14 12 11 37 37 H 1.08996 * 113.61851 * 25.34887 * 14 12 11 38 38 H 1.08001 * 125.95914 * 0.03577 * 18 17 15 39 39 H 1.08001 * 125.52089 * 179.80082 * 20 19 18 40 40 H 1.09004 * 113.61583 * 270.88297 * 22 15 14 41 41 H 1.09009 * 113.61813 * 139.98203 * 22 15 14 42 42 H 1.07998 * 120.02758 * 179.97438 * 23 5 4 43 43 H 1.07995 * 119.97120 * 179.97438 * 24 23 5 44 44 H 1.07995 * 119.94278 * 180.27458 * 25 24 23 45 45 H 1.08005 * 119.97654 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.8691 -2.0940 -1.3073 6 8 1.3561 -2.8107 -0.2729 7 6 1.3240 -4.2316 -0.4210 8 6 0.7276 -4.8523 0.8161 9 8 0.3663 -4.1472 1.7343 10 7 0.5969 -6.1909 0.9023 11 6 0.0167 -6.7941 2.1047 12 6 -0.0176 -8.3156 1.9461 13 1 0.9049 -8.7185 1.5282 14 6 -0.4981 -9.0555 3.2057 15 6 -1.2734 -9.9920 2.2642 16 1 -2.2622 -10.2629 2.6347 17 7 -0.4960 -11.1510 1.8182 18 6 0.3505 -11.2002 0.7751 19 7 0.8461 -12.4093 0.7111 20 6 0.3356 -13.1592 1.6871 21 7 -0.4916 -12.4329 2.3919 22 6 -1.2884 -8.8341 1.2525 23 6 2.3318 -2.7451 -2.4419 24 6 2.8524 -2.0143 -3.4920 25 6 2.9123 -0.6349 -3.4135 26 6 2.4536 0.0159 -2.2834 27 1 -0.3933 0.4418 -0.7650 28 1 1.7924 -0.5140 0.8899 29 1 1.5617 2.4678 1.2085 30 1 3.5347 1.7701 -0.0322 31 1 0.7169 -4.4929 -1.2878 32 1 2.3382 -4.6053 -0.5618 33 1 0.8863 -6.7548 0.1680 34 1 0.6235 -6.5325 2.9715 35 1 -0.9977 -6.4209 2.2453 36 1 0.3033 -9.5520 3.7528 37 1 -1.1390 -8.4523 3.8487 38 1 0.5830 -10.3833 0.1080 39 1 0.5682 -14.1984 1.8670 40 1 -2.1466 -8.1707 1.3608 41 1 -1.1251 -9.1518 0.2226 42 1 2.2848 -3.8223 -2.5038 43 1 3.2130 -2.5206 -4.3752 44 1 3.3156 -0.0651 -4.2375 45 1 2.5016 1.0933 -2.2245 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946164_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:22:55 Heat of formation + Delta-G solvation = 54.418896 kcal Electronic energy + Delta-G solvation = -28950.543249 eV Core-core repulsion = 24745.534633 eV Total energy + Delta-G solvation = -4205.008616 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.23128 -41.61230 -40.82772 -39.99208 -38.48199 -37.46808 -35.86017 -33.37608 -32.71505 -32.18183 -31.35413 -30.22719 -28.17515 -26.97014 -26.66385 -25.10465 -23.47920 -23.07652 -22.59776 -22.40763 -21.71710 -20.61895 -19.46147 -18.50938 -17.99845 -17.86542 -17.52837 -17.22836 -16.90236 -16.75493 -16.44895 -16.32032 -16.08394 -15.77729 -15.53772 -15.43671 -15.21238 -14.98548 -14.86047 -14.62771 -14.20266 -14.04247 -13.77187 -13.53705 -13.46337 -13.21437 -13.01198 -12.98788 -12.35356 -12.18661 -12.16462 -12.06554 -11.79172 -11.75640 -11.64795 -11.06174 -11.02649 -10.87569 -10.59108 -10.37469 -10.23388 -9.93880 -9.19572 -5.05367 0.26488 0.44056 0.60809 1.26820 1.29086 1.42292 1.49458 1.62222 1.94073 1.95609 2.59028 2.73542 3.08463 3.25084 3.42770 3.46007 3.55901 3.58979 3.65068 3.77406 3.87701 3.92235 3.99524 4.05431 4.10488 4.13188 4.15727 4.33361 4.36653 4.38465 4.50049 4.54674 4.65802 4.66123 4.67754 4.71970 4.87198 4.88734 4.99886 5.10725 5.28656 5.30638 5.31845 5.40567 5.40696 5.55755 5.78958 5.89467 6.28365 6.46082 6.82294 7.06269 7.10825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.072 4.072 3 Si 0.793 3.207 4 C -0.172 4.172 5 C 0.126 3.874 6 O -0.316 6.316 7 C 0.036 3.964 8 C 0.511 3.489 9 O -0.574 6.574 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.114 4.114 13 H 0.113 0.887 14 C -0.134 4.134 15 C 0.117 3.883 16 H 0.114 0.886 17 N -0.364 5.364 18 C 0.258 3.742 19 N -0.578 5.578 20 C 0.190 3.810 21 N -0.354 5.354 22 C -0.121 4.121 23 C -0.213 4.213 24 C -0.076 4.076 25 C -0.154 4.154 26 C -0.079 4.079 27 H 0.391 0.609 28 H 0.079 0.921 29 H -0.304 1.304 30 H -0.283 1.283 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.422 0.578 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.118 0.882 38 H 0.256 0.744 39 H 0.235 0.765 40 H 0.124 0.876 41 H 0.102 0.898 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.154 0.846 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.597 0.337 -9.183 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.181 4.181 3 Si 0.698 3.302 4 C -0.173 4.173 5 C 0.080 3.920 6 O -0.229 6.229 7 C -0.042 4.042 8 C 0.297 3.703 9 O -0.452 6.452 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.132 4.132 13 H 0.131 0.869 14 C -0.173 4.173 15 C 0.014 3.986 16 H 0.132 0.868 17 N -0.154 5.154 18 C -0.038 4.038 19 N -0.306 5.306 20 C -0.113 4.113 21 N -0.181 5.181 22 C -0.159 4.159 23 C -0.231 4.231 24 C -0.094 4.094 25 C -0.172 4.172 26 C -0.097 4.097 27 H 0.240 0.760 28 H 0.097 0.903 29 H -0.233 1.233 30 H -0.209 1.209 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.271 0.729 39 H 0.251 0.749 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.601 0.827 -6.951 7.026 hybrid contribution 0.208 -1.130 0.440 1.230 sum 0.810 -0.303 -6.511 6.568 Atomic orbital electron populations 1.86541 1.17679 1.82165 1.50023 1.25159 0.85149 1.11057 0.96697 0.94053 0.77570 0.73938 0.84597 1.19845 1.07026 0.91609 0.98831 1.19102 0.94296 0.91176 0.87414 1.86188 1.78070 1.18828 1.39797 1.22728 1.04408 0.79864 0.97234 1.20533 0.78433 0.83129 0.88241 1.90789 1.50299 1.62705 1.41431 1.45615 1.63789 1.05343 1.21345 1.21324 0.98904 0.91732 0.87000 1.22877 0.99755 0.92820 0.97763 0.86930 1.23373 1.00470 0.96727 0.96710 1.22429 0.95166 0.81845 0.99155 0.86817 1.50385 1.33702 1.08665 1.22635 1.26712 0.88627 0.97434 0.91048 1.70600 1.30141 1.03679 1.26178 1.26535 0.92659 1.02087 0.89992 1.78035 1.25250 0.91049 1.23796 1.23544 0.99204 0.94079 0.99055 1.21592 1.05677 1.01836 0.94021 1.21416 0.95489 0.94326 0.98197 1.21451 1.01922 0.95068 0.98796 1.21109 0.96227 1.00141 0.92181 0.76000 0.90347 1.23268 1.20930 0.85773 0.86166 0.73988 0.92588 0.91120 0.91778 0.86420 0.72865 0.74851 0.85740 0.87948 0.82770 0.82889 0.82870 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.28 12.88 -148.98 -1.92 -6.20 16 2 C -0.07 -0.45 2.38 71.24 0.17 -0.28 16 3 Si 0.79 0.93 29.92 68.60 2.05 2.99 16 4 C -0.17 -0.63 5.27 -19.77 -0.10 -0.73 16 5 C 0.13 0.50 6.66 22.51 0.15 0.65 16 6 O -0.32 -2.36 9.00 -73.33 -0.66 -3.02 16 7 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 8 C 0.51 1.05 7.91 87.66 0.69 1.74 16 9 O -0.57 -8.61 16.50 16.01 0.26 -8.34 16 10 N -0.71 5.14 5.56 -463.06 -2.57 2.57 16 11 C 0.13 -0.83 5.51 86.38 0.48 -0.35 16 12 C -0.11 1.28 3.35 -10.27 -0.03 1.24 16 13 H 0.11 -1.48 7.05 -2.39 -0.02 -1.50 16 14 C -0.13 0.99 7.44 31.12 0.23 1.22 16 15 C 0.12 -0.76 5.21 45.51 0.24 -0.53 16 16 H 0.11 -0.65 8.14 -2.38 -0.02 -0.67 16 17 N -0.36 0.21 3.81 -328.93 -1.25 -1.05 16 18 C 0.26 -0.68 10.82 180.36 1.95 1.27 16 19 N -0.58 -2.44 11.19 -204.01 -2.28 -4.72 16 20 C 0.19 0.83 13.03 180.77 2.36 3.18 16 21 N -0.35 -2.18 12.70 -61.25 -0.78 -2.95 16 22 C -0.12 1.56 6.89 31.12 0.21 1.78 16 23 C -0.21 0.55 9.04 22.37 0.20 0.75 16 24 C -0.08 0.35 10.04 22.26 0.22 0.58 16 25 C -0.15 0.66 10.04 22.28 0.22 0.89 16 26 C -0.08 0.16 8.66 22.25 0.19 0.35 16 27 H 0.39 -0.90 8.70 -74.06 -0.64 -1.54 16 28 H 0.08 0.96 7.83 -2.39 -0.02 0.95 16 29 H -0.30 -2.81 7.11 99.48 0.71 -2.10 16 30 H -0.28 -1.46 7.11 99.48 0.71 -0.75 16 31 H 0.12 -1.18 7.66 -2.39 -0.02 -1.20 16 32 H 0.12 -1.09 7.66 -2.39 -0.02 -1.11 16 33 H 0.42 -6.57 8.47 -92.71 -0.79 -7.36 16 34 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.07 -0.30 7.84 -2.39 -0.02 -0.32 16 36 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 38 H 0.26 -3.35 6.76 -2.91 -0.02 -3.37 16 39 H 0.24 -0.39 8.06 -2.91 -0.02 -0.41 16 40 H 0.12 -1.75 7.90 -2.39 -0.02 -1.77 16 41 H 0.10 -1.63 7.02 -2.38 -0.02 -1.65 16 42 H 0.15 -1.38 6.30 -2.91 -0.02 -1.40 16 43 H 0.15 -1.51 8.06 -2.91 -0.02 -1.53 16 44 H 0.15 -1.42 8.06 -2.91 -0.02 -1.44 16 45 H 0.16 -1.14 5.13 -2.91 -0.01 -1.16 16 Total: 0.00 -38.49 378.25 0.06 -38.43 By element: Atomic # 1 Polarization: -29.39 SS G_CDS: -0.34 Total: -29.73 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 7.55 Total: 12.03 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: -6.89 Total: -6.16 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -2.31 Total: -17.56 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: 2.05 Total: 2.99 kcal Total: -38.49 0.06 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.852 kcal (2) G-P(sol) polarization free energy of solvation -38.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds