Wall clock time and date at job start Sun Mar 7 2021 13:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86300 * 109.47241 * 2 1 4 4 C 1.50700 * 109.47341 * 240.00126 * 2 1 3 5 5 C 1.38264 * 119.94555 * 119.72100 * 4 2 1 6 6 C 1.38138 * 120.05431 * 179.72623 * 5 4 2 7 7 C 1.38740 * 119.94513 * 0.57743 * 6 5 4 8 8 O 1.35899 * 120.05536 * 179.68548 * 7 6 5 9 9 C 1.42900 * 117.00511 * 0.02562 * 8 7 6 10 10 C 1.52994 * 109.47389 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47158 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99616 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00298 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00326 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46852 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.85699 * 314.66698 * 15 14 13 17 17 C 1.53782 * 113.61347 * 85.86917 * 15 14 13 18 18 C 1.53952 * 87.02123 * 139.94609 * 17 15 14 19 19 H 1.08996 * 113.66559 * 220.06562 * 18 17 15 20 20 N 1.46507 * 113.61346 * 89.20004 * 18 17 15 21 21 C 1.34425 * 126.81888 * 347.46234 * 20 18 17 22 22 N 1.30836 * 108.07604 * 179.97438 * 21 20 18 23 23 C 1.33249 * 109.82492 * 0.02562 * 22 21 20 24 24 N 1.30712 * 108.94933 * 359.75294 * 23 22 21 25 25 C 1.53782 * 87.11244 * 334.63731 * 18 17 15 26 26 C 1.38726 * 119.88742 * 359.69711 * 7 6 5 27 27 C 1.38153 * 119.94564 * 0.02562 * 26 7 6 28 28 H 0.96693 * 114.00306 * 59.99646 * 1 2 3 29 29 H 1.09000 * 109.47349 * 120.00016 * 2 1 3 30 30 H 1.48506 * 110.00048 * 298.68597 * 3 2 1 31 31 H 1.48502 * 109.99996 * 59.99922 * 3 2 1 32 32 H 1.08002 * 119.97450 * 359.97438 * 5 4 2 33 33 H 1.08003 * 120.02825 * 180.25290 * 6 5 4 34 34 H 1.09007 * 109.47130 * 300.00980 * 9 8 7 35 35 H 1.09003 * 109.46727 * 59.99954 * 9 8 7 36 36 H 1.08996 * 109.47071 * 300.00340 * 10 9 8 37 37 H 1.09001 * 109.46830 * 60.00503 * 10 9 8 38 38 H 0.96999 * 119.99728 * 359.97438 * 13 11 10 39 39 H 1.08990 * 109.47193 * 300.00148 * 14 13 11 40 40 H 1.09001 * 109.46936 * 60.00088 * 14 13 11 41 41 H 1.09002 * 113.61175 * 254.52463 * 17 15 14 42 42 H 1.08999 * 113.61128 * 25.42751 * 17 15 14 43 43 H 1.08004 * 125.96746 * 359.93299 * 21 20 18 44 44 H 1.08001 * 125.52439 * 179.97438 * 23 22 21 45 45 H 1.09002 * 113.60912 * 270.81439 * 25 18 17 46 46 H 1.08992 * 113.61408 * 139.91309 * 25 18 17 47 47 H 1.07999 * 120.03394 * 179.97438 * 26 7 6 48 48 H 1.07995 * 119.97802 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7214 -0.0356 -2.1427 6 6 3.1878 -0.6862 -3.2685 7 6 2.8530 -2.0143 -3.4895 8 8 3.3053 -2.6547 -4.5996 9 6 4.1220 -1.8996 -5.4967 10 6 4.5317 -2.7812 -6.6781 11 6 5.3935 -1.9850 -7.6239 12 8 5.6547 -0.8267 -7.3770 13 7 5.8740 -2.5601 -8.7440 14 6 6.7123 -1.7863 -9.6632 15 6 7.1219 -2.6679 -10.8446 16 1 7.4565 -3.6588 -10.5375 17 6 6.0879 -2.6922 -11.9827 18 6 7.2787 -2.6484 -12.9574 19 1 7.1136 -2.0046 -13.8213 20 7 7.7863 -3.9730 -13.3238 21 6 7.4854 -5.1426 -12.7334 22 7 8.1408 -6.0905 -13.3530 23 6 8.8676 -5.5670 -14.3394 24 7 8.6799 -4.2736 -14.3647 25 6 8.0769 -1.9732 -11.8296 26 6 2.0554 -2.6875 -2.5756 27 6 1.5962 -2.0340 -1.4483 28 1 -0.3933 0.4417 -0.7649 29 1 1.7923 -0.5138 0.8900 30 1 1.5878 2.4586 -1.2242 31 1 1.5615 2.4679 1.2085 32 1 2.9775 0.9998 -1.9730 33 1 3.8083 -0.1599 -3.9788 34 1 3.5608 -1.0398 -5.8627 35 1 5.0140 -1.5551 -4.9734 36 1 5.0928 -3.6411 -6.3124 37 1 3.6395 -3.1252 -7.2013 38 1 5.6655 -3.4867 -8.9413 39 1 6.1522 -0.9257 -10.0285 40 1 7.6047 -1.4434 -9.1396 41 1 5.5154 -3.6184 -12.0327 42 1 5.4596 -1.8023 -12.0207 43 1 6.8195 -5.2765 -11.8937 44 1 9.5054 -6.1218 -15.0116 45 1 7.9932 -0.8864 -11.8258 46 1 9.1077 -2.3197 -11.7564 47 1 1.7930 -3.7212 -2.7455 48 1 0.9749 -2.5574 -0.7367 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946164_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:23:03 Heat of formation + Delta-G solvation = 46.409798 kcal Electronic energy + Delta-G solvation = -29866.460323 eV Core-core repulsion = 25505.566788 eV Total energy + Delta-G solvation = -4360.893535 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.28535 -41.44752 -41.04184 -40.21153 -39.16381 -37.26444 -35.94597 -33.67852 -33.22159 -32.17620 -32.03012 -31.46069 -29.34767 -27.32598 -26.62894 -25.80576 -24.86807 -23.46174 -23.13394 -22.53088 -22.20578 -21.65065 -20.80381 -19.54075 -18.43348 -18.17036 -17.91446 -17.61324 -17.55498 -16.95401 -16.84385 -16.49811 -16.35323 -16.22410 -16.12891 -15.82739 -15.66250 -15.45373 -14.97913 -14.82654 -14.69314 -14.44674 -14.29707 -14.21890 -13.97416 -13.88817 -13.43253 -13.38847 -13.09201 -12.93600 -12.89486 -12.47939 -12.18485 -12.05986 -12.02610 -11.95794 -11.83537 -11.56386 -11.11370 -11.03605 -10.83254 -10.68648 -10.57017 -10.33517 -10.01026 -9.18536 -4.94591 0.31453 0.33748 0.55367 1.11398 1.31252 1.41361 1.58019 1.61001 1.95659 1.97872 2.33979 2.68487 2.78925 2.94689 3.19959 3.24949 3.30423 3.39666 3.43002 3.68703 3.72482 3.74476 3.77140 3.82610 3.84471 3.93655 3.95684 4.07775 4.21520 4.23610 4.28451 4.28503 4.33443 4.37112 4.47051 4.51627 4.55609 4.57023 4.59085 4.63241 4.74044 4.80654 4.97836 5.14760 5.20075 5.22222 5.30892 5.39589 5.51613 5.72940 5.73558 6.18310 6.34743 6.42855 6.96133 7.04985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.069 4.069 3 Si 0.680 3.320 4 C -0.156 4.156 5 C -0.075 4.075 6 C -0.203 4.203 7 C 0.137 3.863 8 O -0.316 6.316 9 C 0.073 3.927 10 C -0.142 4.142 11 C 0.520 3.480 12 O -0.537 6.537 13 N -0.729 5.729 14 C 0.130 3.870 15 C -0.130 4.130 16 H 0.101 0.899 17 C -0.137 4.137 18 C 0.128 3.872 19 H 0.117 0.883 20 N -0.363 5.363 21 C 0.252 3.748 22 N -0.543 5.543 23 C 0.200 3.800 24 N -0.315 5.315 25 C -0.133 4.133 26 C -0.151 4.151 27 C -0.053 4.053 28 H 0.376 0.624 29 H 0.118 0.882 30 H -0.261 1.261 31 H -0.257 1.257 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.403 0.597 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.215 0.785 44 H 0.219 0.781 45 H 0.110 0.890 46 H 0.083 0.917 47 H 0.133 0.867 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -0.602 -1.282 1.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.179 4.179 3 Si 0.582 3.418 4 C -0.157 4.157 5 C -0.093 4.093 6 C -0.221 4.221 7 C 0.092 3.908 8 O -0.230 6.230 9 C -0.002 4.002 10 C -0.182 4.182 11 C 0.306 3.694 12 O -0.413 6.413 13 N -0.381 5.381 14 C 0.007 3.993 15 C -0.149 4.149 16 H 0.119 0.881 17 C -0.176 4.176 18 C 0.025 3.975 19 H 0.135 0.865 20 N -0.154 5.154 21 C -0.045 4.045 22 N -0.270 5.270 23 C -0.103 4.103 24 N -0.142 5.142 25 C -0.172 4.172 26 C -0.169 4.169 27 C -0.071 4.071 28 H 0.223 0.777 29 H 0.135 0.865 30 H -0.186 1.186 31 H -0.182 1.182 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.132 0.868 43 H 0.231 0.769 44 H 0.236 0.764 45 H 0.128 0.872 46 H 0.101 0.899 47 H 0.151 0.849 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.985 0.789 -1.058 1.647 hybrid contribution -1.136 -0.460 -0.643 1.384 sum -0.152 0.329 -1.702 1.740 Atomic orbital electron populations 1.86589 1.17863 1.79928 1.49346 1.24933 0.83822 1.10707 0.98428 0.95065 0.91806 0.74732 0.80208 1.20186 1.02018 0.95517 0.97987 1.20806 0.96077 0.99231 0.93177 1.21264 1.05801 0.94350 1.00711 1.18989 0.94077 0.91013 0.86720 1.85974 1.65070 1.40464 1.31481 1.22424 0.94769 0.93821 0.89200 1.21467 1.01335 0.99936 0.95426 1.20299 0.80047 0.87439 0.81571 1.90768 1.58782 1.17279 1.74488 1.45920 1.52960 1.16141 1.23127 1.21357 0.94990 0.93953 0.89018 1.22990 0.97285 1.00619 0.93983 0.88126 1.23580 0.95644 1.05010 0.93333 1.22218 0.95608 0.81022 0.98695 0.86474 1.50248 1.33984 1.07510 1.23641 1.25963 0.98508 0.81268 0.98779 1.70614 1.13402 1.32321 1.10674 1.26122 0.98428 0.89095 0.96664 1.78124 1.11102 1.17202 1.07734 1.23360 0.99481 1.01486 0.92873 1.20505 1.00890 1.01073 0.94442 1.20837 0.96917 0.93448 0.95932 0.77688 0.86457 1.18594 1.18220 0.85345 0.84804 0.90929 0.90787 0.87373 0.87421 0.76232 0.90622 0.90743 0.89806 0.86779 0.76896 0.76438 0.87178 0.89875 0.84861 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.77 12.77 -35.23 -0.45 -1.22 16 2 C -0.07 0.00 2.82 36.01 0.10 0.10 16 3 Si 0.68 -0.37 29.78 -169.99 -5.06 -5.43 16 4 C -0.16 -0.08 5.39 -104.60 -0.56 -0.64 16 5 C -0.08 -0.02 8.66 -39.61 -0.34 -0.36 16 6 C -0.20 -0.14 9.04 -39.43 -0.36 -0.50 16 7 C 0.14 0.19 6.69 -39.22 -0.26 -0.07 16 8 O -0.32 -0.27 10.14 -19.42 -0.20 -0.46 16 9 C 0.07 -0.06 4.03 37.15 0.15 0.09 16 10 C -0.14 0.45 6.07 -27.89 -0.17 0.28 16 11 C 0.52 -0.74 7.83 -10.99 -0.09 -0.82 16 12 O -0.54 -1.51 15.98 5.56 0.09 -1.42 16 13 N -0.73 3.05 5.56 -60.30 -0.33 2.72 16 14 C 0.13 -0.52 5.50 -4.04 -0.02 -0.54 16 15 C -0.13 0.72 3.34 -89.81 -0.30 0.42 16 16 H 0.10 -0.58 7.03 -51.93 -0.37 -0.95 16 17 C -0.14 0.81 6.90 -25.83 -0.18 0.64 16 18 C 0.13 -0.44 5.21 -67.02 -0.35 -0.79 16 19 H 0.12 -0.39 8.14 -51.93 -0.42 -0.81 16 20 N -0.36 0.15 3.81 -55.23 -0.21 -0.06 16 21 C 0.25 -0.22 10.83 -90.65 -0.98 -1.20 16 22 N -0.54 -1.13 11.19 -15.83 -0.18 -1.30 16 23 C 0.20 0.33 13.03 -91.81 -1.20 -0.87 16 24 N -0.31 -0.77 12.70 29.29 0.37 -0.39 16 25 C -0.13 0.57 7.44 -25.92 -0.19 0.38 16 26 C -0.15 -0.15 9.99 -39.43 -0.39 -0.54 16 27 C -0.05 -0.04 9.60 -39.60 -0.38 -0.42 16 28 H 0.38 -0.47 8.70 45.56 0.40 -0.07 16 29 H 0.12 -0.08 7.96 -51.93 -0.41 -0.50 16 30 H -0.26 -0.39 7.11 56.52 0.40 0.01 16 31 H -0.26 -0.70 7.11 56.52 0.40 -0.30 16 32 H 0.13 -0.18 4.87 -52.49 -0.26 -0.44 16 33 H 0.13 -0.05 6.30 -52.48 -0.33 -0.38 16 34 H 0.07 -0.03 7.62 -51.93 -0.40 -0.42 16 35 H 0.07 -0.03 7.62 -51.93 -0.40 -0.43 16 36 H 0.11 -0.49 8.14 -51.93 -0.42 -0.91 16 37 H 0.11 -0.50 8.14 -51.93 -0.42 -0.92 16 38 H 0.40 -2.78 8.47 -40.82 -0.35 -3.13 16 39 H 0.08 -0.26 7.88 -51.93 -0.41 -0.66 16 40 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 41 H 0.08 -0.54 7.03 -51.93 -0.37 -0.91 16 42 H 0.11 -0.74 7.92 -51.93 -0.41 -1.16 16 43 H 0.21 -1.10 6.75 -52.48 -0.35 -1.46 16 44 H 0.22 -0.33 8.06 -52.49 -0.42 -0.75 16 45 H 0.11 -0.58 8.10 -51.93 -0.42 -1.00 16 46 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 47 H 0.13 -0.03 8.06 -52.49 -0.42 -0.45 16 48 H 0.13 -0.02 8.06 -52.49 -0.42 -0.44 16 LS Contribution 399.65 15.07 6.02 6.02 Total: 0.00 -11.60 399.65 -12.12 -23.72 By element: Atomic # 1 Polarization: -10.66 SS G_CDS: -6.65 Total: -17.31 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -5.52 Total: -4.86 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: -0.35 Total: 0.95 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: -0.56 Total: -3.10 kcal Atomic # 14 Polarization: -0.37 SS G_CDS: -5.06 Total: -5.43 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -11.60 -12.12 -23.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.132 kcal (2) G-P(sol) polarization free energy of solvation -11.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds