Wall clock time and date at job start Sun Mar 7 2021 13:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46702 * 240.00171 * 2 1 3 5 5 C 1.38245 * 119.96871 * 119.72222 * 4 2 1 6 6 C 1.38288 * 120.10859 * 179.76069 * 5 4 2 7 7 C 1.38115 * 120.05566 * 0.51751 * 6 5 4 8 8 C 1.38755 * 119.94666 * 359.73969 * 7 6 5 9 9 O 1.35900 * 120.05685 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00076 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.47243 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99696 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99887 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.85000 * 316.19557 * 15 14 13 17 17 C 1.53784 * 113.61265 * 87.50512 * 15 14 13 18 18 C 1.53784 * 87.08417 * 139.98362 * 17 15 14 19 19 H 1.08999 * 113.61707 * 220.02325 * 18 17 15 20 20 N 1.46500 * 113.69318 * 89.12168 * 18 17 15 21 21 C 1.34425 * 126.82303 * 347.46695 * 20 18 17 22 22 N 1.30829 * 108.07960 * 179.97438 * 21 20 18 23 23 C 1.33247 * 109.82526 * 0.02562 * 22 21 20 24 24 N 1.30713 * 108.94985 * 359.75141 * 23 22 21 25 25 C 1.53781 * 113.61829 * 184.99881 * 15 14 13 26 26 C 1.38159 * 119.97244 * 299.99704 * 4 2 1 27 27 H 0.96696 * 113.99911 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.46890 * 120.00330 * 2 1 3 29 29 H 1.48498 * 109.99815 * 60.00030 * 3 2 1 30 30 H 1.48492 * 109.99988 * 181.32183 * 3 2 1 31 31 H 1.08001 * 119.94873 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.96925 * 180.23167 * 6 5 4 33 33 H 1.08008 * 120.02849 * 179.76373 * 7 6 5 34 34 H 1.09000 * 109.47326 * 299.99524 * 10 9 8 35 35 H 1.08997 * 109.47241 * 59.99892 * 10 9 8 36 36 H 0.96997 * 120.00239 * 0.02562 * 13 11 10 37 37 H 1.09008 * 109.47003 * 300.00455 * 14 13 11 38 38 H 1.09000 * 109.47200 * 59.99547 * 14 13 11 39 39 H 1.09007 * 113.61106 * 254.52442 * 17 15 14 40 40 H 1.08999 * 113.61622 * 25.43134 * 17 15 14 41 41 H 1.08006 * 125.96487 * 359.93226 * 21 20 18 42 42 H 1.08006 * 125.52371 * 180.02562 * 23 22 21 43 43 H 1.09001 * 113.61231 * 334.57109 * 25 15 14 44 44 H 1.08996 * 113.61746 * 105.38125 * 25 15 14 45 45 H 1.08000 * 120.03218 * 359.95678 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7213 -0.0363 -2.1431 6 6 3.1878 -0.6868 -3.2707 7 6 2.8566 -2.0090 -3.4933 8 6 2.0594 -2.6863 -2.5817 9 8 1.7317 -3.9872 -2.7988 10 6 2.2431 -4.5956 -3.9863 11 6 1.7798 -6.0279 -4.0566 12 8 1.0808 -6.4830 -3.1760 13 7 2.1421 -6.8031 -5.0978 14 6 1.6912 -8.1953 -5.1664 15 6 2.2389 -8.8467 -6.4378 16 1 2.1511 -8.2044 -7.3140 17 6 3.6366 -9.4633 -6.2610 18 6 3.1458 -10.6308 -7.1335 19 1 3.4876 -11.6069 -6.7893 20 7 3.3622 -10.4253 -8.5678 21 6 3.7057 -9.2759 -9.1742 22 7 3.8016 -9.5072 -10.4583 23 6 3.5273 -10.7869 -10.7087 24 7 3.2570 -11.3914 -9.5817 25 6 1.7233 -10.2771 -6.6684 26 6 1.5972 -2.0331 -1.4486 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5139 0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5345 1.7703 -0.0322 31 1 2.9774 0.9991 -1.9733 32 1 3.8079 -0.1590 -3.9802 33 1 3.2181 -2.5155 -4.3762 34 1 1.8792 -4.0525 -4.8585 35 1 3.3326 -4.5670 -3.9690 36 1 2.7014 -6.4392 -5.8018 37 1 2.0554 -8.7385 -4.2943 38 1 0.6017 -8.2239 -5.1833 39 1 4.4331 -8.8788 -6.7217 40 1 3.8606 -9.7501 -5.2336 41 1 3.8726 -8.3267 -8.6867 42 1 3.5323 -11.2506 -11.6842 43 1 1.4242 -10.7864 -5.7522 44 1 0.9740 -10.3494 -7.4567 45 1 0.9769 -2.5583 -0.7374 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946164_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:23:50 Heat of formation + Delta-G solvation = 57.076072 kcal Electronic energy + Delta-G solvation = -28349.237950 eV Core-core repulsion = 24144.344558 eV Total energy + Delta-G solvation = -4204.893392 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.29299 -41.62160 -40.94173 -40.14992 -38.93820 -37.24860 -35.91784 -33.44897 -32.52344 -32.20109 -31.81916 -30.28931 -28.34477 -27.32099 -26.81175 -25.18779 -23.72361 -23.18289 -22.72417 -22.48873 -21.70508 -20.83346 -19.37972 -18.70097 -18.11650 -17.86390 -17.61596 -17.33167 -17.10296 -16.96448 -16.73145 -16.34339 -16.21953 -16.07832 -15.66462 -15.56215 -15.29325 -15.01355 -14.80114 -14.68296 -14.22982 -14.19005 -13.99908 -13.89996 -13.64172 -13.30936 -13.09367 -12.99464 -12.61926 -12.48904 -12.23536 -12.02622 -11.98495 -11.94614 -11.69367 -11.04308 -11.01491 -10.83847 -10.68917 -10.52008 -10.35505 -9.96346 -9.32219 -5.05079 0.14913 0.34994 0.54853 1.10909 1.22333 1.36682 1.38173 1.61797 1.95006 1.95528 2.42546 2.61997 2.78976 2.93531 3.18084 3.23857 3.29495 3.39513 3.45523 3.59200 3.68095 3.72248 3.78991 3.81099 3.82685 3.93428 3.95560 4.07007 4.13791 4.23813 4.28791 4.32151 4.33419 4.47474 4.49785 4.55053 4.57099 4.63136 4.79910 4.91921 5.10999 5.18087 5.21693 5.29793 5.38803 5.39038 5.59031 5.73048 6.11309 6.28831 6.56153 6.96371 7.04337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.538 6.538 2 C -0.071 4.071 3 Si 0.694 3.306 4 C -0.079 4.079 5 C -0.154 4.154 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.129 3.871 9 O -0.288 6.288 10 C 0.041 3.959 11 C 0.515 3.485 12 O -0.510 6.510 13 N -0.728 5.728 14 C 0.132 3.868 15 C -0.130 4.130 16 H 0.101 0.899 17 C -0.137 4.137 18 C 0.128 3.872 19 H 0.118 0.882 20 N -0.363 5.363 21 C 0.251 3.749 22 N -0.543 5.543 23 C 0.200 3.800 24 N -0.314 5.314 25 C -0.133 4.133 26 C -0.120 4.120 27 H 0.380 0.620 28 H 0.116 0.884 29 H -0.254 1.254 30 H -0.258 1.258 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.402 0.598 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.115 0.885 41 H 0.215 0.785 42 H 0.219 0.781 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 2.772 -3.575 5.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.182 4.182 3 Si 0.596 3.404 4 C -0.080 4.080 5 C -0.172 4.172 6 C -0.091 4.091 7 C -0.225 4.225 8 C 0.083 3.917 9 O -0.201 6.201 10 C -0.038 4.038 11 C 0.300 3.700 12 O -0.383 6.383 13 N -0.383 5.383 14 C 0.009 3.991 15 C -0.149 4.149 16 H 0.119 0.881 17 C -0.176 4.176 18 C 0.025 3.975 19 H 0.136 0.864 20 N -0.154 5.154 21 C -0.046 4.046 22 N -0.270 5.270 23 C -0.103 4.103 24 N -0.141 5.141 25 C -0.172 4.172 26 C -0.139 4.139 27 H 0.227 0.773 28 H 0.133 0.867 29 H -0.179 1.179 30 H -0.183 1.183 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.237 0.763 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.231 0.769 42 H 0.236 0.764 43 H 0.129 0.871 44 H 0.102 0.898 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.633 2.036 -1.928 3.847 hybrid contribution 0.604 -0.333 -0.382 0.789 sum 3.238 1.704 -2.309 4.326 Atomic orbital electron populations 1.86525 1.16862 1.81708 1.49221 1.25139 0.85441 1.10264 0.97311 0.94636 0.80883 0.77736 0.87152 1.20168 0.97424 0.93809 0.96601 1.20954 1.00843 0.99853 0.95519 1.20909 0.97759 0.93658 0.96726 1.21290 1.03626 0.96671 1.00917 1.19040 0.94886 0.82961 0.94782 1.86173 1.70409 1.22620 1.40880 1.22453 1.00236 0.92156 0.88970 1.20044 0.80812 0.87040 0.82135 1.90808 1.35798 1.74172 1.37568 1.45772 1.54686 1.12702 1.25114 1.21375 1.00204 0.80430 0.97071 1.22992 0.96350 0.96981 0.98538 0.88082 1.23563 0.97201 0.95582 1.01230 1.22179 0.98502 1.01755 0.75111 0.86444 1.50246 1.50814 1.07095 1.07201 1.25952 0.96172 0.93179 0.89250 1.70608 1.24884 1.17516 1.14016 1.26123 0.97063 0.88821 0.98316 1.78129 1.25653 1.13919 0.96413 1.23366 0.95922 0.94786 1.03124 1.20271 1.02744 0.93930 0.96966 0.77303 0.86664 1.17943 1.18277 0.85329 0.85058 0.85241 0.88678 0.88750 0.76344 0.90484 0.90591 0.89820 0.86711 0.76917 0.76436 0.87131 0.89846 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.35 12.77 -35.23 -0.45 -0.80 16 2 C -0.07 0.00 2.82 36.01 0.10 0.10 16 3 Si 0.69 -0.84 29.79 -169.99 -5.06 -5.90 16 4 C -0.08 -0.04 5.39 -104.65 -0.56 -0.60 16 5 C -0.15 0.13 8.67 -39.56 -0.34 -0.22 16 6 C -0.07 0.10 10.04 -39.61 -0.40 -0.30 16 7 C -0.21 0.20 9.04 -39.44 -0.36 -0.16 16 8 C 0.13 0.18 6.69 -39.21 -0.26 -0.08 16 9 O -0.29 -0.68 9.67 -39.34 -0.38 -1.06 16 10 C 0.04 -0.08 5.22 36.01 0.19 0.11 16 11 C 0.52 0.01 7.91 -10.99 -0.09 -0.08 16 12 O -0.51 -2.76 16.50 -14.36 -0.24 -2.99 16 13 N -0.73 2.79 5.56 -60.29 -0.33 2.46 16 14 C 0.13 -0.48 5.51 -4.04 -0.02 -0.51 16 15 C -0.13 0.72 3.35 -89.81 -0.30 0.42 16 16 H 0.10 -0.60 7.03 -51.93 -0.37 -0.97 16 17 C -0.14 0.81 6.89 -25.92 -0.18 0.64 16 18 C 0.13 -0.43 5.21 -67.12 -0.35 -0.78 16 19 H 0.12 -0.39 8.14 -51.93 -0.42 -0.81 16 20 N -0.36 0.17 3.81 -55.32 -0.21 -0.04 16 21 C 0.25 -0.25 10.83 -90.66 -0.98 -1.24 16 22 N -0.54 -1.06 11.19 -15.83 -0.18 -1.23 16 23 C 0.20 0.31 13.03 -91.81 -1.20 -0.88 16 24 N -0.31 -0.75 12.70 29.29 0.37 -0.38 16 25 C -0.13 0.56 7.44 -25.92 -0.19 0.36 16 26 C -0.12 -0.23 9.55 -39.43 -0.38 -0.61 16 27 H 0.38 -1.26 8.70 45.56 0.40 -0.87 16 28 H 0.12 0.06 7.96 -51.93 -0.41 -0.35 16 29 H -0.25 -0.54 7.11 56.52 0.40 -0.13 16 30 H -0.26 -0.25 7.11 56.52 0.40 0.15 16 31 H 0.13 -0.34 4.87 -52.49 -0.26 -0.60 16 32 H 0.13 -0.49 8.06 -52.49 -0.42 -0.91 16 33 H 0.13 -0.48 6.30 -52.48 -0.33 -0.81 16 34 H 0.10 -0.43 7.66 -51.93 -0.40 -0.83 16 35 H 0.09 -0.43 7.66 -51.93 -0.40 -0.83 16 36 H 0.40 -2.88 8.47 -40.82 -0.35 -3.22 16 37 H 0.08 -0.23 7.84 -51.92 -0.41 -0.63 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 39 H 0.08 -0.55 7.04 -51.92 -0.37 -0.92 16 40 H 0.11 -0.74 7.89 -51.93 -0.41 -1.15 16 41 H 0.21 -1.15 6.76 -52.48 -0.35 -1.50 16 42 H 0.22 -0.34 8.06 -52.48 -0.42 -0.76 16 43 H 0.11 -0.57 8.10 -51.93 -0.42 -0.99 16 44 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 45 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 378.67 15.07 5.71 5.71 Total: 0.00 -13.56 378.67 -11.90 -25.45 By element: Atomic # 1 Polarization: -11.58 SS G_CDS: -5.80 Total: -17.38 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -5.32 Total: -3.82 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -0.35 Total: 0.80 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -1.07 Total: -4.85 kcal Atomic # 14 Polarization: -0.84 SS G_CDS: -5.06 Total: -5.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -13.56 -11.90 -25.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.530 kcal (2) G-P(sol) polarization free energy of solvation -13.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds