Wall clock time and date at job start Sun Mar 7 2021 13:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86301 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46702 * 240.00171 * 2 1 3 5 5 C 1.38245 * 119.96871 * 119.72222 * 4 2 1 6 6 C 1.38288 * 120.10859 * 179.76069 * 5 4 2 7 7 C 1.38115 * 120.05566 * 0.51751 * 6 5 4 8 8 C 1.38755 * 119.94666 * 359.73969 * 7 6 5 9 9 O 1.35900 * 120.05685 * 179.97438 * 8 7 6 10 10 C 1.42895 * 117.00076 * 0.02562 * 9 8 7 11 11 C 1.50707 * 109.47243 * 179.97438 * 10 9 8 12 12 O 1.21287 * 119.99696 * 359.97438 * 11 10 9 13 13 N 1.34770 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99887 * 180.02562 * 13 11 10 15 15 C 1.52994 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.08997 * 112.85000 * 316.19557 * 15 14 13 17 17 C 1.53784 * 113.61265 * 87.50512 * 15 14 13 18 18 C 1.53784 * 87.08417 * 139.98362 * 17 15 14 19 19 H 1.08999 * 113.61707 * 220.02325 * 18 17 15 20 20 N 1.46500 * 113.69318 * 89.12168 * 18 17 15 21 21 C 1.34425 * 126.82303 * 347.46695 * 20 18 17 22 22 N 1.30829 * 108.07960 * 179.97438 * 21 20 18 23 23 C 1.33247 * 109.82526 * 0.02562 * 22 21 20 24 24 N 1.30713 * 108.94985 * 359.75141 * 23 22 21 25 25 C 1.53781 * 113.61829 * 184.99881 * 15 14 13 26 26 C 1.38159 * 119.97244 * 299.99704 * 4 2 1 27 27 H 0.96696 * 113.99911 * 59.99999 * 1 2 3 28 28 H 1.09000 * 109.46890 * 120.00330 * 2 1 3 29 29 H 1.48498 * 109.99815 * 60.00030 * 3 2 1 30 30 H 1.48492 * 109.99988 * 181.32183 * 3 2 1 31 31 H 1.08001 * 119.94873 * 359.97438 * 5 4 2 32 32 H 1.08001 * 119.96925 * 180.23167 * 6 5 4 33 33 H 1.08008 * 120.02849 * 179.76373 * 7 6 5 34 34 H 1.09000 * 109.47326 * 299.99524 * 10 9 8 35 35 H 1.08997 * 109.47241 * 59.99892 * 10 9 8 36 36 H 0.96997 * 120.00239 * 0.02562 * 13 11 10 37 37 H 1.09008 * 109.47003 * 300.00455 * 14 13 11 38 38 H 1.09000 * 109.47200 * 59.99547 * 14 13 11 39 39 H 1.09007 * 113.61106 * 254.52442 * 17 15 14 40 40 H 1.08999 * 113.61622 * 25.43134 * 17 15 14 41 41 H 1.08006 * 125.96487 * 359.93226 * 21 20 18 42 42 H 1.08006 * 125.52371 * 180.02562 * 23 22 21 43 43 H 1.09001 * 113.61231 * 334.57109 * 25 15 14 44 44 H 1.08996 * 113.61746 * 105.38125 * 25 15 14 45 45 H 1.08000 * 120.03218 * 359.95678 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.7213 -0.0363 -2.1431 6 6 3.1878 -0.6868 -3.2707 7 6 2.8566 -2.0090 -3.4933 8 6 2.0594 -2.6863 -2.5817 9 8 1.7317 -3.9872 -2.7988 10 6 2.2431 -4.5956 -3.9863 11 6 1.7798 -6.0279 -4.0566 12 8 1.0808 -6.4830 -3.1760 13 7 2.1421 -6.8031 -5.0978 14 6 1.6912 -8.1953 -5.1664 15 6 2.2389 -8.8467 -6.4378 16 1 2.1511 -8.2044 -7.3140 17 6 3.6366 -9.4633 -6.2610 18 6 3.1458 -10.6308 -7.1335 19 1 3.4876 -11.6069 -6.7893 20 7 3.3622 -10.4253 -8.5678 21 6 3.7057 -9.2759 -9.1742 22 7 3.8016 -9.5072 -10.4583 23 6 3.5273 -10.7869 -10.7087 24 7 3.2570 -11.3914 -9.5817 25 6 1.7233 -10.2771 -6.6684 26 6 1.5972 -2.0331 -1.4486 27 1 -0.3933 0.4417 -0.7650 28 1 1.7923 -0.5139 0.8900 29 1 1.5615 2.4678 1.2085 30 1 3.5345 1.7703 -0.0322 31 1 2.9774 0.9991 -1.9733 32 1 3.8079 -0.1590 -3.9802 33 1 3.2181 -2.5155 -4.3762 34 1 1.8792 -4.0525 -4.8585 35 1 3.3326 -4.5670 -3.9690 36 1 2.7014 -6.4392 -5.8018 37 1 2.0554 -8.7385 -4.2943 38 1 0.6017 -8.2239 -5.1833 39 1 4.4331 -8.8788 -6.7217 40 1 3.8606 -9.7501 -5.2336 41 1 3.8726 -8.3267 -8.6867 42 1 3.5323 -11.2506 -11.6842 43 1 1.4242 -10.7864 -5.7522 44 1 0.9740 -10.3494 -7.4567 45 1 0.9769 -2.5583 -0.7374 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946164_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:23:49 Heat of formation + Delta-G solvation = 54.031131 kcal Electronic energy + Delta-G solvation = -28349.369988 eV Core-core repulsion = 24144.344558 eV Total energy + Delta-G solvation = -4205.025430 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.21102 -41.55839 -40.79757 -39.99835 -38.91549 -37.23092 -35.83905 -33.35573 -32.45357 -32.17626 -31.73346 -30.16781 -28.14196 -26.94793 -26.77475 -25.01732 -23.65480 -23.09394 -22.64998 -22.34607 -21.60471 -20.60321 -19.30745 -18.58246 -17.89908 -17.78055 -17.49314 -17.27797 -17.00288 -16.86737 -16.56770 -16.23933 -16.15113 -15.99692 -15.50802 -15.48877 -15.20363 -14.91416 -14.70797 -14.60058 -14.18753 -14.06125 -13.94468 -13.52410 -13.45100 -13.18730 -12.99749 -12.90736 -12.60679 -12.14673 -12.10017 -11.99585 -11.75807 -11.69186 -11.61355 -11.04336 -11.01025 -10.85749 -10.57264 -10.50639 -10.20938 -9.90751 -9.27172 -4.98474 0.21948 0.40203 0.62701 1.28627 1.28794 1.44313 1.50975 1.65490 1.95878 1.97696 2.59168 2.68888 3.10445 3.27210 3.44652 3.47515 3.52463 3.60668 3.67114 3.68458 3.87388 3.89458 4.02981 4.09125 4.12583 4.14444 4.16255 4.26050 4.36119 4.38967 4.50482 4.52557 4.64323 4.67802 4.68795 4.74657 4.89324 4.91249 4.99241 5.12981 5.25642 5.30712 5.33911 5.38314 5.42333 5.46291 5.70756 5.91565 6.28451 6.47453 6.74774 7.08109 7.12846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.086 4.086 3 Si 0.795 3.205 4 C -0.085 4.085 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.201 4.201 8 C 0.114 3.886 9 O -0.325 6.325 10 C 0.036 3.964 11 C 0.511 3.489 12 O -0.577 6.577 13 N -0.705 5.705 14 C 0.133 3.867 15 C -0.113 4.113 16 H 0.114 0.886 17 C -0.121 4.121 18 C 0.116 3.884 19 H 0.113 0.887 20 N -0.363 5.363 21 C 0.258 3.742 22 N -0.578 5.578 23 C 0.190 3.810 24 N -0.354 5.354 25 C -0.134 4.134 26 C -0.151 4.151 27 H 0.395 0.605 28 H 0.100 0.900 29 H -0.302 1.302 30 H -0.279 1.279 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.423 0.577 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.256 0.744 42 H 0.235 0.765 43 H 0.117 0.883 44 H 0.064 0.936 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 4.498 -5.238 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.085 4.085 5 C -0.176 4.176 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.238 6.238 10 C -0.041 4.041 11 C 0.297 3.703 12 O -0.455 6.455 13 N -0.360 5.360 14 C 0.010 3.990 15 C -0.132 4.132 16 H 0.132 0.868 17 C -0.159 4.159 18 C 0.013 3.987 19 H 0.131 0.869 20 N -0.154 5.154 21 C -0.038 4.038 22 N -0.306 5.306 23 C -0.113 4.113 24 N -0.182 5.182 25 C -0.173 4.173 26 C -0.170 4.170 27 H 0.245 0.755 28 H 0.118 0.882 29 H -0.231 1.231 30 H -0.206 1.206 31 H 0.166 0.834 32 H 0.181 0.819 33 H 0.180 0.820 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.261 0.739 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.142 0.858 41 H 0.272 0.728 42 H 0.251 0.749 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.555 3.739 -3.654 6.934 hybrid contribution -0.016 -0.926 0.165 0.941 sum 4.539 2.813 -3.489 6.379 Atomic orbital electron populations 1.86477 1.17430 1.82303 1.50454 1.25429 0.85282 1.11858 0.96933 0.93509 0.77734 0.74151 0.84560 1.20199 0.97967 0.93325 0.97051 1.21220 1.00196 1.00740 0.95419 1.21345 0.97174 0.93572 0.96695 1.21642 1.02311 0.96877 1.01128 1.19187 0.95741 0.82928 0.95235 1.86124 1.71405 1.23292 1.42987 1.22762 1.02022 0.90666 0.88681 1.20551 0.79860 0.88070 0.81823 1.90783 1.39023 1.75536 1.40199 1.45613 1.53679 1.12246 1.24485 1.21330 0.99263 0.80606 0.97830 1.22873 0.96398 0.96052 0.97838 0.86838 1.23547 0.97124 0.94056 1.01173 1.22434 0.99313 1.02857 0.74094 0.86928 1.50376 1.50443 1.06845 1.07692 1.26725 0.94277 0.94154 0.88661 1.70599 1.26403 1.17799 1.15790 1.26530 0.96747 0.89064 0.98949 1.78041 1.27008 1.15768 0.97348 1.23375 0.95105 0.96047 1.02765 1.20279 1.04061 0.94950 0.97696 0.75465 0.88207 1.23067 1.20614 0.83422 0.81903 0.81953 0.85601 0.85544 0.73904 0.91107 0.92441 0.87974 0.85774 0.72795 0.74902 0.86442 0.91753 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.65 12.77 -148.98 -1.90 -3.55 16 2 C -0.09 -0.13 2.82 71.24 0.20 0.08 16 3 Si 0.80 -1.95 29.79 68.60 2.04 0.09 16 4 C -0.08 -0.14 5.39 -19.88 -0.11 -0.25 16 5 C -0.16 0.47 8.67 22.28 0.19 0.67 16 6 C -0.07 0.38 10.04 22.25 0.22 0.61 16 7 C -0.20 0.84 9.04 22.36 0.20 1.04 16 8 C 0.11 0.36 6.69 22.51 0.15 0.51 16 9 O -0.32 -1.80 9.67 -73.39 -0.71 -2.51 16 10 C 0.04 -0.19 5.22 71.24 0.37 0.18 16 11 C 0.51 -0.04 7.91 87.66 0.69 0.65 16 12 O -0.58 -7.36 16.50 15.98 0.26 -7.10 16 13 N -0.71 6.41 5.56 -463.05 -2.57 3.84 16 14 C 0.13 -1.03 5.51 86.38 0.48 -0.55 16 15 C -0.11 1.41 3.35 -10.27 -0.03 1.37 16 16 H 0.11 -1.64 7.03 -2.39 -0.02 -1.66 16 17 C -0.12 1.68 6.89 31.12 0.21 1.90 16 18 C 0.12 -0.84 5.21 45.52 0.24 -0.61 16 19 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 20 N -0.36 0.47 3.81 -328.93 -1.25 -0.78 16 21 C 0.26 -0.88 10.83 180.36 1.95 1.07 16 22 N -0.58 -2.06 11.19 -203.99 -2.28 -4.34 16 23 C 0.19 0.72 13.03 180.76 2.36 3.07 16 24 N -0.35 -1.97 12.70 -61.24 -0.78 -2.75 16 25 C -0.13 1.12 7.44 31.12 0.23 1.35 16 26 C -0.15 -0.90 9.55 22.36 0.21 -0.68 16 27 H 0.40 -2.24 8.70 -74.06 -0.64 -2.89 16 28 H 0.10 0.36 7.96 -2.39 -0.02 0.34 16 29 H -0.30 -1.64 7.11 99.48 0.71 -0.93 16 30 H -0.28 -0.31 7.11 99.48 0.71 0.39 16 31 H 0.15 -1.10 4.87 -2.91 -0.01 -1.12 16 32 H 0.16 -1.92 8.06 -2.91 -0.02 -1.95 16 33 H 0.16 -1.89 6.30 -2.91 -0.02 -1.91 16 34 H 0.13 -1.49 7.66 -2.39 -0.02 -1.51 16 35 H 0.13 -1.53 7.66 -2.39 -0.02 -1.55 16 36 H 0.42 -7.37 8.47 -92.71 -0.79 -8.16 16 37 H 0.07 -0.41 7.84 -2.38 -0.02 -0.43 16 38 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.10 -1.72 7.04 -2.38 -0.02 -1.74 16 40 H 0.12 -1.86 7.89 -2.39 -0.02 -1.88 16 41 H 0.26 -3.60 6.76 -2.91 -0.02 -3.62 16 42 H 0.23 -0.50 8.06 -2.91 -0.02 -0.52 16 43 H 0.12 -1.16 8.10 -2.39 -0.02 -1.18 16 44 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.11 1.08 8.06 -2.91 -0.02 1.05 16 Total: 0.00 -37.17 378.67 0.04 -37.13 By element: Atomic # 1 Polarization: -30.10 SS G_CDS: -0.34 Total: -30.45 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 7.57 Total: 10.41 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -6.89 Total: -4.03 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -2.35 Total: -13.16 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.04 Total: 0.09 kcal Total: -37.17 0.04 -37.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.164 kcal (2) G-P(sol) polarization free energy of solvation -37.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds