Wall clock time and date at job start Sun Mar 7 2021 13:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 122.44873 * 2 1 4 4 C 1.50706 * 124.51950 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47065 * 329.99935 * 4 3 2 6 6 Si 1.86301 * 109.46845 * 210.00149 * 4 3 2 7 7 S 1.70616 * 110.95628 * 180.24182 * 3 2 1 8 8 C 1.75841 * 91.56020 * 359.65820 * 7 3 2 9 9 C 1.46576 * 125.45581 * 180.02562 * 8 7 3 10 10 O 1.21707 * 120.00099 * 180.33468 * 9 8 7 11 11 N 1.34784 * 120.00375 * 0.33357 * 9 8 7 12 12 C 1.46499 * 120.00332 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47068 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.84794 * 45.33779 * 13 12 11 15 15 C 1.53782 * 113.61104 * 176.52658 * 13 12 11 16 16 C 1.53783 * 87.07720 * 139.98226 * 15 13 12 17 17 H 1.08994 * 113.61693 * 220.01772 * 16 15 13 18 18 N 1.46507 * 113.61210 * 89.20015 * 16 15 13 19 19 C 1.34423 * 126.82383 * 274.70703 * 18 16 15 20 20 N 1.30834 * 108.07852 * 179.89563 * 19 18 16 21 21 C 1.33240 * 109.82412 * 0.38108 * 20 19 18 22 22 N 1.30709 * 108.95063 * 359.76366 * 21 20 19 23 23 C 1.53777 * 113.61263 * 274.13937 * 13 12 11 24 24 C 1.36644 * 109.08020 * 0.33712 * 8 7 3 25 25 H 1.08996 * 109.47180 * 90.00544 * 1 2 3 26 26 H 1.09007 * 109.47063 * 209.99949 * 1 2 3 27 27 H 1.09000 * 109.47447 * 330.00337 * 1 2 3 28 28 H 1.08999 * 109.47015 * 90.00462 * 4 3 2 29 29 H 0.96703 * 113.99572 * 180.02562 * 5 4 3 30 30 H 1.48507 * 109.99786 * 298.68223 * 6 4 3 31 31 H 1.48498 * 110.00204 * 60.00234 * 6 4 3 32 32 H 0.97003 * 119.99200 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.46962 * 300.00085 * 12 11 9 34 34 H 1.08995 * 109.46720 * 59.99727 * 12 11 9 35 35 H 1.08994 * 113.61680 * 254.52852 * 15 13 12 36 36 H 1.08996 * 113.61638 * 25.43766 * 15 13 12 37 37 H 1.08007 * 125.96032 * 0.04345 * 19 18 16 38 38 H 1.08005 * 125.52018 * 179.72818 * 21 20 19 39 39 H 1.08998 * 113.61354 * 334.56212 * 23 13 12 40 40 H 1.09000 * 113.61301 * 105.47524 * 23 13 12 41 41 H 1.08010 * 123.34721 * 179.78365 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5162 -0.0006 5 8 0.3755 2.4979 -0.6747 6 14 2.7927 3.6825 -0.8787 7 16 3.8969 0.7893 -0.0067 8 6 3.5937 -0.9427 0.0009 9 6 4.6231 -1.9861 0.0003 10 8 4.3002 -3.1596 -0.0002 11 7 5.9273 -1.6462 0.0002 12 6 6.9562 -2.6891 0.0002 13 6 8.3413 -2.0391 -0.0005 14 1 8.4247 -1.2198 0.7137 15 6 9.4964 -3.0506 0.0847 16 6 10.2384 -2.1699 -0.9345 17 1 10.7833 -2.7386 -1.6880 18 7 11.0503 -1.1170 -0.3191 19 6 10.6326 0.1016 0.0650 20 7 11.6563 0.7413 0.5696 21 6 12.7415 -0.0300 0.5174 22 7 12.4209 -1.1781 -0.0189 23 6 8.8551 -1.6857 -1.4062 24 6 2.2446 -1.1600 0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.4929 2.8508 1.0270 29 1 -0.0622 3.3593 -0.7135 30 1 4.0961 3.7347 -0.1690 31 1 2.9952 3.2373 -2.2808 32 1 6.1847 -0.7109 0.0010 33 1 6.8456 -3.3086 0.8902 34 1 6.8455 -3.3086 -0.8898 35 1 9.9758 -3.0846 1.0630 36 1 9.2405 -4.0389 -0.2969 37 1 9.6268 0.4848 -0.0250 38 1 13.7265 0.2486 0.8619 39 1 8.4235 -2.3004 -2.1961 40 1 8.8176 -0.6195 -1.6296 41 1 1.8019 -2.1452 0.0012 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946164_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:24:25 Heat of formation + Delta-G solvation = 92.097799 kcal Electronic energy + Delta-G solvation = -25598.953031 eV Core-core repulsion = 21803.412734 eV Total energy + Delta-G solvation = -3795.540297 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.26470 -41.13749 -40.31592 -39.59230 -37.49639 -35.85639 -33.42430 -32.41296 -32.10146 -30.26503 -29.47427 -27.29564 -26.52661 -25.11771 -24.10241 -23.12057 -22.51370 -21.87700 -20.89126 -20.09785 -19.19532 -18.56939 -18.09363 -17.64123 -16.99784 -16.92141 -16.66556 -16.32566 -16.14259 -15.88659 -15.73928 -15.34761 -14.97851 -14.87195 -14.61678 -14.45005 -14.36746 -14.14251 -13.86665 -13.43760 -13.22669 -13.08477 -13.04245 -12.91344 -12.57112 -12.45119 -12.23581 -12.03809 -11.98670 -11.89566 -11.16895 -11.01766 -10.81189 -10.75197 -10.66652 -10.31847 -9.73149 -9.45037 -5.33594 -0.67930 0.22613 0.57320 0.60767 0.98260 1.13559 1.31454 1.42646 1.77545 1.88445 1.97564 2.12213 2.80914 2.97428 3.12515 3.22721 3.27065 3.32983 3.57519 3.66276 3.75148 3.86182 3.96418 4.07904 4.10566 4.21306 4.26944 4.32051 4.35371 4.36575 4.50428 4.55920 4.59440 4.66277 4.81399 4.85233 4.90152 5.01853 5.16869 5.24214 5.37348 5.41686 5.46816 5.75431 6.21980 6.40817 6.99963 7.06893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.084 4.084 3 C -0.195 4.195 4 C -0.033 4.033 5 O -0.536 6.536 6 Si 0.670 3.330 7 S 0.180 5.820 8 C -0.263 4.263 9 C 0.594 3.406 10 O -0.523 6.523 11 N -0.728 5.728 12 C 0.132 3.868 13 C -0.132 4.132 14 H 0.100 0.900 15 C -0.131 4.131 16 C 0.129 3.871 17 H 0.118 0.882 18 N -0.363 5.363 19 C 0.251 3.749 20 N -0.543 5.543 21 C 0.199 3.801 22 N -0.315 5.315 23 C -0.139 4.139 24 C -0.044 4.044 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.384 0.616 30 H -0.238 1.238 31 H -0.241 1.241 32 H 0.398 0.602 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.111 0.889 37 H 0.214 0.786 38 H 0.219 0.781 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.864 4.968 -0.528 5.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.314 4.314 4 C -0.146 4.146 5 O -0.343 6.343 6 Si 0.568 3.432 7 S 0.447 5.553 8 C -0.383 4.383 9 C 0.380 3.620 10 O -0.400 6.400 11 N -0.380 5.380 12 C 0.009 3.991 13 C -0.151 4.151 14 H 0.118 0.882 15 C -0.170 4.170 16 C 0.025 3.975 17 H 0.136 0.864 18 N -0.153 5.153 19 C -0.045 4.045 20 N -0.270 5.270 21 C -0.103 4.103 22 N -0.141 5.141 23 C -0.177 4.177 24 C -0.077 4.077 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.233 0.767 30 H -0.162 1.162 31 H -0.164 1.164 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.230 0.770 38 H 0.236 0.764 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.346 4.141 -1.041 4.284 hybrid contribution -1.471 -0.747 0.280 1.674 sum -1.817 3.394 -0.761 3.924 Atomic orbital electron populations 1.20530 0.88239 1.02675 1.02999 1.18745 0.98788 0.90237 1.01886 1.23226 0.97878 0.98854 1.11423 1.23975 0.92987 0.96197 1.01414 1.86571 1.32539 1.36299 1.78908 0.94959 0.79679 0.87227 0.81304 1.82927 1.03239 0.99185 1.69922 1.24571 0.98042 0.96587 1.19061 1.16902 0.81506 0.87382 0.76201 1.90872 1.81567 1.18084 1.49482 1.45822 1.05465 1.10266 1.76473 1.21387 0.84354 0.89920 1.03443 1.23006 0.94132 1.00021 0.97896 0.88161 1.23351 0.94583 0.98541 1.00568 1.22219 0.90653 0.88259 0.96341 0.86399 1.50248 1.06840 1.12559 1.45691 1.25952 1.00517 0.83449 0.94618 1.70609 0.98765 1.33347 1.24265 1.26118 0.99473 0.87486 0.97260 1.78118 0.90508 1.23146 1.22362 1.23596 0.92813 1.03501 0.97775 1.20777 0.90902 1.00221 0.95790 0.90738 0.92118 0.90051 0.89722 0.76728 1.16220 1.16447 0.76823 0.90459 0.90358 0.89816 0.87086 0.76991 0.76428 0.86664 0.89854 0.82463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.04 8.70 36.01 0.31 0.28 16 2 C -0.08 -0.15 5.75 -106.46 -0.61 -0.76 16 3 C -0.20 -0.20 5.57 -35.86 -0.20 -0.40 16 4 C -0.03 0.06 2.75 36.01 0.10 0.15 16 5 O -0.54 1.10 9.81 -35.23 -0.35 0.76 16 6 Si 0.67 -1.62 31.30 -169.99 -5.32 -6.94 16 7 S 0.18 0.05 19.78 -107.50 -2.13 -2.07 16 8 C -0.26 -0.55 6.45 -36.80 -0.24 -0.79 16 9 C 0.59 1.60 7.78 -12.90 -0.10 1.50 16 10 O -0.52 -3.25 16.84 5.18 0.09 -3.16 16 11 N -0.73 0.58 5.55 -61.65 -0.34 0.24 16 12 C 0.13 -0.27 5.50 -4.04 -0.02 -0.29 16 13 C -0.13 0.53 3.34 -89.81 -0.30 0.23 16 14 H 0.10 -0.42 7.05 -51.93 -0.37 -0.78 16 15 C -0.13 0.43 7.44 -25.92 -0.19 0.24 16 16 C 0.13 -0.32 5.21 -67.02 -0.35 -0.67 16 17 H 0.12 -0.31 8.14 -51.93 -0.42 -0.73 16 18 N -0.36 -0.15 3.81 -55.22 -0.21 -0.36 16 19 C 0.25 0.01 10.83 -90.66 -0.98 -0.97 16 20 N -0.54 -1.48 11.19 -15.83 -0.18 -1.66 16 21 C 0.20 0.44 13.03 -91.82 -1.20 -0.76 16 22 N -0.31 -0.95 12.70 29.29 0.37 -0.58 16 23 C -0.14 0.63 6.90 -25.83 -0.18 0.45 16 24 C -0.04 -0.10 9.79 -40.44 -0.40 -0.50 16 25 H 0.07 0.05 8.14 -51.93 -0.42 -0.37 16 26 H 0.06 -0.01 8.13 -51.93 -0.42 -0.44 16 27 H 0.08 0.00 6.42 -51.93 -0.33 -0.33 16 28 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 29 H 0.38 -2.64 8.74 45.56 0.40 -2.25 16 30 H -0.24 0.18 7.11 56.52 0.40 0.59 16 31 H -0.24 -0.27 7.11 56.52 0.40 0.13 16 32 H 0.40 -1.13 7.59 -40.82 -0.31 -1.44 16 33 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.08 -0.14 7.87 -51.93 -0.41 -0.55 16 35 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 36 H 0.11 -0.49 8.10 -51.93 -0.42 -0.91 16 37 H 0.21 -0.84 6.76 -52.48 -0.35 -1.19 16 38 H 0.22 -0.23 8.06 -52.48 -0.42 -0.65 16 39 H 0.12 -0.60 7.92 -51.93 -0.41 -1.02 16 40 H 0.08 -0.42 7.02 -51.93 -0.36 -0.79 16 41 H 0.16 0.31 8.06 -52.48 -0.42 -0.11 16 LS Contribution 356.51 15.07 5.37 5.37 Total: 0.00 -11.08 356.51 -12.19 -23.27 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: -5.14 Total: -12.58 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -4.35 Total: -2.29 kcal Atomic # 7 Polarization: -2.00 SS G_CDS: -0.36 Total: -2.36 kcal Atomic # 8 Polarization: -2.15 SS G_CDS: -0.26 Total: -2.41 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: -5.32 Total: -6.94 kcal Atomic # 16 Polarization: 0.05 SS G_CDS: -2.13 Total: -2.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -11.08 -12.19 -23.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.365 kcal (2) G-P(sol) polarization free energy of solvation -11.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds