Wall clock time and date at job start Sun Mar 7 2021 13:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33818 * 122.44873 * 2 1 4 4 C 1.50706 * 124.51950 * 359.97438 * 3 2 1 5 5 O 1.42895 * 109.47065 * 329.99935 * 4 3 2 6 6 Si 1.86301 * 109.46845 * 210.00149 * 4 3 2 7 7 S 1.70616 * 110.95628 * 180.24182 * 3 2 1 8 8 C 1.75841 * 91.56020 * 359.65820 * 7 3 2 9 9 C 1.46576 * 125.45581 * 180.02562 * 8 7 3 10 10 O 1.21707 * 120.00099 * 180.33468 * 9 8 7 11 11 N 1.34784 * 120.00375 * 0.33357 * 9 8 7 12 12 C 1.46499 * 120.00332 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47068 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.84794 * 45.33779 * 13 12 11 15 15 C 1.53782 * 113.61104 * 176.52658 * 13 12 11 16 16 C 1.53783 * 87.07720 * 139.98226 * 15 13 12 17 17 H 1.08994 * 113.61693 * 220.01772 * 16 15 13 18 18 N 1.46507 * 113.61210 * 89.20015 * 16 15 13 19 19 C 1.34423 * 126.82383 * 274.70703 * 18 16 15 20 20 N 1.30834 * 108.07852 * 179.89563 * 19 18 16 21 21 C 1.33240 * 109.82412 * 0.38108 * 20 19 18 22 22 N 1.30709 * 108.95063 * 359.76366 * 21 20 19 23 23 C 1.53777 * 113.61263 * 274.13937 * 13 12 11 24 24 C 1.36644 * 109.08020 * 0.33712 * 8 7 3 25 25 H 1.08996 * 109.47180 * 90.00544 * 1 2 3 26 26 H 1.09007 * 109.47063 * 209.99949 * 1 2 3 27 27 H 1.09000 * 109.47447 * 330.00337 * 1 2 3 28 28 H 1.08999 * 109.47015 * 90.00462 * 4 3 2 29 29 H 0.96703 * 113.99572 * 180.02562 * 5 4 3 30 30 H 1.48507 * 109.99786 * 298.68223 * 6 4 3 31 31 H 1.48498 * 110.00204 * 60.00234 * 6 4 3 32 32 H 0.97003 * 119.99200 * 0.02562 * 11 9 8 33 33 H 1.08998 * 109.46962 * 300.00085 * 12 11 9 34 34 H 1.08995 * 109.46720 * 59.99727 * 12 11 9 35 35 H 1.08994 * 113.61680 * 254.52852 * 15 13 12 36 36 H 1.08996 * 113.61638 * 25.43766 * 15 13 12 37 37 H 1.08007 * 125.96032 * 0.04345 * 19 18 16 38 38 H 1.08005 * 125.52018 * 179.72818 * 21 20 19 39 39 H 1.08998 * 113.61354 * 334.56212 * 23 13 12 40 40 H 1.09000 * 113.61301 * 105.47524 * 23 13 12 41 41 H 1.08010 * 123.34721 * 179.78365 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6354 2.5162 -0.0006 5 8 0.3755 2.4979 -0.6747 6 14 2.7927 3.6825 -0.8787 7 16 3.8969 0.7893 -0.0067 8 6 3.5937 -0.9427 0.0009 9 6 4.6231 -1.9861 0.0003 10 8 4.3002 -3.1596 -0.0002 11 7 5.9273 -1.6462 0.0002 12 6 6.9562 -2.6891 0.0002 13 6 8.3413 -2.0391 -0.0005 14 1 8.4247 -1.2198 0.7137 15 6 9.4964 -3.0506 0.0847 16 6 10.2384 -2.1699 -0.9345 17 1 10.7833 -2.7386 -1.6880 18 7 11.0503 -1.1170 -0.3191 19 6 10.6326 0.1016 0.0650 20 7 11.6563 0.7413 0.5696 21 6 12.7415 -0.0300 0.5174 22 7 12.4209 -1.1781 -0.0189 23 6 8.8551 -1.6857 -1.4062 24 6 2.2446 -1.1600 0.0005 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.4929 2.8508 1.0270 29 1 -0.0622 3.3593 -0.7135 30 1 4.0961 3.7347 -0.1690 31 1 2.9952 3.2373 -2.2808 32 1 6.1847 -0.7109 0.0010 33 1 6.8456 -3.3086 0.8902 34 1 6.8455 -3.3086 -0.8898 35 1 9.9758 -3.0846 1.0630 36 1 9.2405 -4.0389 -0.2969 37 1 9.6268 0.4848 -0.0250 38 1 13.7265 0.2486 0.8619 39 1 8.4235 -2.3004 -2.1961 40 1 8.8176 -0.6195 -1.6296 41 1 1.8019 -2.1452 0.0012 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946164_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:24:24 Heat of formation + Delta-G solvation = 92.180052 kcal Electronic energy + Delta-G solvation = -25598.949464 eV Core-core repulsion = 21803.412734 eV Total energy + Delta-G solvation = -3795.536731 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.25814 -41.18923 -40.23434 -39.59982 -37.36081 -35.93654 -33.43016 -32.45137 -32.13879 -30.23923 -29.41609 -27.01279 -26.50313 -25.05038 -24.11012 -23.10958 -22.46091 -21.96367 -20.76734 -20.09529 -19.22868 -18.43194 -17.93250 -17.60059 -17.03249 -16.88620 -16.67826 -16.29274 -16.09796 -15.87834 -15.67250 -15.28713 -14.96770 -14.84763 -14.59688 -14.44154 -14.36362 -14.05850 -13.56182 -13.35247 -13.26570 -13.06343 -13.02235 -12.90932 -12.54876 -12.27313 -12.20114 -11.98219 -11.81205 -11.73495 -11.32568 -11.08837 -10.89933 -10.66255 -10.62155 -10.34722 -9.74174 -9.46690 -5.15164 -0.77302 0.18793 0.53960 0.57308 1.04156 1.23739 1.31632 1.57430 1.87888 1.91484 1.91725 1.96976 3.03308 3.21737 3.30660 3.38977 3.43818 3.56804 3.65719 3.73764 3.84977 4.05215 4.06198 4.08245 4.26981 4.32208 4.42368 4.46319 4.54518 4.60590 4.62868 4.66850 4.76277 4.83112 4.85920 4.88811 4.94903 5.05126 5.20178 5.27049 5.33464 5.38617 5.44191 5.85177 6.20702 6.88605 6.90211 7.03436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.102 4.102 3 C -0.206 4.206 4 C -0.041 4.041 5 O -0.551 6.551 6 Si 0.751 3.249 7 S 0.213 5.787 8 C -0.282 4.282 9 C 0.590 3.410 10 O -0.568 6.568 11 N -0.713 5.713 12 C 0.133 3.867 13 C -0.120 4.120 14 H 0.107 0.893 15 C -0.128 4.128 16 C 0.118 3.882 17 H 0.118 0.882 18 N -0.363 5.363 19 C 0.255 3.745 20 N -0.577 5.577 21 C 0.190 3.810 22 N -0.351 5.351 23 C -0.125 4.125 24 C -0.057 4.057 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.405 0.595 30 H -0.255 1.255 31 H -0.291 1.291 32 H 0.409 0.591 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.123 0.877 37 H 0.250 0.750 38 H 0.237 0.763 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 6.599 -0.606 7.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.325 4.325 4 C -0.153 4.153 5 O -0.362 6.362 6 Si 0.654 3.346 7 S 0.480 5.520 8 C -0.401 4.401 9 C 0.377 3.623 10 O -0.449 6.449 11 N -0.364 5.364 12 C 0.010 3.990 13 C -0.139 4.139 14 H 0.125 0.875 15 C -0.167 4.167 16 C 0.016 3.984 17 H 0.136 0.864 18 N -0.153 5.153 19 C -0.041 4.041 20 N -0.304 5.304 21 C -0.112 4.112 22 N -0.178 5.178 23 C -0.163 4.163 24 C -0.091 4.091 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.126 0.874 29 H 0.258 0.742 30 H -0.181 1.181 31 H -0.218 1.218 32 H 0.246 0.754 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.141 0.859 37 H 0.265 0.735 38 H 0.253 0.747 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.858 5.808 -1.106 5.974 hybrid contribution -1.324 -1.220 0.263 1.820 sum -2.182 4.588 -0.843 5.149 Atomic orbital electron populations 1.20503 0.87591 1.03112 1.02760 1.18877 0.99446 0.90257 1.02826 1.23733 0.98399 1.00165 1.10203 1.24172 0.93514 0.94582 1.03005 1.86528 1.32362 1.38390 1.78878 0.93991 0.77918 0.85651 0.77042 1.82697 1.02791 0.97333 1.69133 1.24629 0.97911 0.97826 1.19759 1.17082 0.82531 0.86883 0.75778 1.90840 1.82370 1.19762 1.51892 1.45752 1.04603 1.11265 1.74802 1.21439 0.84896 0.89741 1.02943 1.22913 0.92425 0.99803 0.98717 0.87485 1.23349 0.94470 0.99316 0.99545 1.22463 0.91226 0.88185 0.96563 0.86429 1.50387 1.06201 1.13257 1.45456 1.26619 1.01348 0.82997 0.93118 1.70600 0.99594 1.34473 1.25767 1.26558 1.00357 0.87303 0.96987 1.78034 0.92299 1.23956 1.23527 1.23600 0.90742 1.04537 0.97457 1.20876 0.91419 1.00410 0.96380 0.91266 0.91910 0.89379 0.87401 0.74248 1.18085 1.21822 0.75436 0.91619 0.90340 0.91502 0.85901 0.73468 0.74683 0.85501 0.88543 0.83184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.10 8.70 71.24 0.62 0.52 16 2 C -0.10 -0.41 5.75 -21.05 -0.12 -0.53 16 3 C -0.21 -0.33 5.57 24.68 0.14 -0.19 16 4 C -0.04 0.20 2.75 71.24 0.20 0.39 16 5 O -0.55 2.97 9.81 -148.98 -1.46 1.51 16 6 Si 0.75 -4.53 31.30 68.60 2.15 -2.38 16 7 S 0.21 0.02 19.78 -56.49 -1.12 -1.09 16 8 C -0.28 -1.40 6.45 24.07 0.16 -1.25 16 9 C 0.59 3.75 7.78 86.42 0.67 4.42 16 10 O -0.57 -8.11 16.84 -4.37 -0.07 -8.19 16 11 N -0.71 1.24 5.55 -467.17 -2.59 -1.35 16 12 C 0.13 -0.55 5.50 86.38 0.47 -0.08 16 13 C -0.12 1.07 3.34 -10.27 -0.03 1.03 16 14 H 0.11 -1.05 7.05 -2.38 -0.02 -1.07 16 15 C -0.13 0.87 7.44 31.12 0.23 1.10 16 16 C 0.12 -0.65 5.21 45.58 0.24 -0.41 16 17 H 0.12 -0.63 8.14 -2.39 -0.02 -0.64 16 18 N -0.36 -0.23 3.81 -328.62 -1.25 -1.49 16 19 C 0.26 -0.18 10.83 180.36 1.95 1.78 16 20 N -0.58 -3.17 11.19 -204.00 -2.28 -5.45 16 21 C 0.19 0.96 13.03 180.77 2.36 3.32 16 22 N -0.35 -2.37 12.70 -61.24 -0.78 -3.15 16 23 C -0.13 1.34 6.90 31.18 0.22 1.55 16 24 C -0.06 -0.35 9.79 21.71 0.21 -0.14 16 25 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 26 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 27 H 0.09 -0.04 6.42 -2.39 -0.02 -0.05 16 28 H 0.11 -0.97 7.96 -2.39 -0.02 -0.99 16 29 H 0.41 -6.33 8.74 -74.06 -0.65 -6.97 16 30 H -0.26 0.81 7.11 99.48 0.71 1.51 16 31 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 32 H 0.41 -2.74 7.59 -92.71 -0.70 -3.44 16 33 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.08 -0.28 7.87 -2.39 -0.02 -0.30 16 35 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.12 -1.13 8.10 -2.39 -0.02 -1.15 16 37 H 0.25 -2.48 6.76 -2.91 -0.02 -2.50 16 38 H 0.24 -0.29 8.06 -2.91 -0.02 -0.31 16 39 H 0.13 -1.56 7.92 -2.39 -0.02 -1.58 16 40 H 0.10 -1.22 7.02 -2.39 -0.02 -1.23 16 41 H 0.15 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -27.74 356.51 -0.33 -28.07 By element: Atomic # 1 Polarization: -17.78 SS G_CDS: -0.23 Total: -18.01 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 7.31 Total: 11.52 kcal Atomic # 7 Polarization: -4.53 SS G_CDS: -6.91 Total: -11.44 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -1.54 Total: -6.67 kcal Atomic # 14 Polarization: -4.53 SS G_CDS: 2.15 Total: -2.38 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -1.12 Total: -1.09 kcal Total: -27.74 -0.33 -28.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946164_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.251 kcal (2) G-P(sol) polarization free energy of solvation -27.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds