Wall clock time and date at job start Sun Mar 7 2021 13:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47206 * 2 1 4 4 C 1.50704 * 109.47221 * 119.99823 * 2 1 3 5 5 C 1.34833 * 125.65107 * 65.29854 * 4 2 1 6 6 C 1.40795 * 107.04981 * 180.15919 * 5 4 2 7 7 C 1.36109 * 106.73337 * 359.56997 * 6 5 4 8 8 C 1.47569 * 125.94728 * 180.26566 * 7 6 5 9 9 C 1.39919 * 119.95145 * 359.72585 * 8 7 6 10 10 C 1.36433 * 120.27573 * 179.71740 * 9 8 7 11 11 C 1.39873 * 120.18486 * 0.55767 * 10 9 8 12 12 C 1.47293 * 120.04793 * 179.69706 * 11 10 9 13 13 O 1.21620 * 120.00089 * 180.02562 * 12 11 10 14 14 N 1.34781 * 119.99908 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00053 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.46880 * 180.02562 * 15 14 12 17 17 H 1.09003 * 112.85623 * 45.33207 * 16 15 14 18 18 C 1.53790 * 113.61210 * 176.53255 * 16 15 14 19 19 C 1.53786 * 87.08030 * 139.97802 * 18 16 15 20 20 H 1.09003 * 113.60970 * 220.01559 * 19 18 16 21 21 N 1.46495 * 113.61357 * 89.20074 * 19 18 16 22 22 C 1.35315 * 125.86586 * 274.99455 * 21 19 18 23 23 C 1.35356 * 106.17369 * 180.02562 * 22 21 19 24 24 N 1.33768 * 106.49903 * 0.02562 * 23 22 21 25 25 N 1.28641 * 108.88285 * 359.73752 * 24 23 22 26 26 C 1.53783 * 113.61366 * 274.13203 * 16 15 14 27 27 C 1.40407 * 119.90907 * 359.72121 * 11 10 9 28 28 O 1.35679 * 120.14147 * 179.97438 * 27 11 10 29 29 C 1.38279 * 119.72302 * 359.97438 * 27 11 10 30 30 O 1.34226 * 125.65161 * 244.97880 * 4 2 1 31 31 H 0.96697 * 113.99755 * 300.00378 * 1 2 3 32 32 H 1.08999 * 109.47490 * 239.99782 * 2 1 3 33 33 H 1.48500 * 110.00201 * 178.67987 * 3 2 1 34 34 H 1.48500 * 110.00036 * 299.99940 * 3 2 1 35 35 H 1.07995 * 126.47650 * 0.02562 * 5 4 2 36 36 H 1.08002 * 126.63743 * 179.83926 * 6 5 4 37 37 H 1.07997 * 119.86817 * 359.97438 * 9 8 7 38 38 H 1.07994 * 119.90817 * 180.25442 * 10 9 8 39 39 H 0.97003 * 119.99615 * 0.02562 * 14 12 11 40 40 H 1.08999 * 109.46962 * 300.00206 * 15 14 12 41 41 H 1.08994 * 109.46857 * 59.99937 * 15 14 12 42 42 H 1.09006 * 113.60884 * 254.52686 * 18 16 15 43 43 H 1.08992 * 113.61317 * 25.42357 * 18 16 15 44 44 H 1.07997 * 126.91470 * 0.02562 * 22 21 19 45 45 H 1.08002 * 126.74721 * 180.02562 * 23 22 21 46 46 H 1.09002 * 113.61653 * 334.57390 * 26 16 15 47 47 H 1.08998 * 113.61327 * 105.47014 * 26 16 15 48 48 H 0.96700 * 113.99352 * 270.02076 * 28 27 11 49 49 H 1.08003 * 120.09550 * 179.97438 * 29 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7617 -2.0192 1.5067 6 6 2.3802 -2.2627 2.7478 7 6 2.9080 -1.0784 3.1618 8 6 3.6574 -0.8542 4.4131 9 6 3.8730 -1.9162 5.2981 10 6 4.5700 -1.7176 6.4541 11 6 5.0640 -0.4472 6.7680 12 6 5.8103 -0.2348 8.0200 13 8 6.2391 0.8702 8.2923 14 7 6.0179 -1.2650 8.8638 15 6 6.7597 -1.0537 10.1094 16 6 6.8534 -2.3735 10.8773 17 1 7.1260 -3.2153 10.2408 18 6 7.6889 -2.2790 12.1650 19 6 6.6337 -3.1842 12.8225 20 1 6.3897 -2.8982 13.8457 21 7 6.9192 -4.6144 12.6843 22 6 6.5894 -5.3899 11.6256 23 6 7.0386 -6.6336 11.9148 24 7 7.6131 -6.5591 13.1205 25 7 7.5303 -5.3483 13.5471 26 6 5.6375 -2.6503 11.7773 27 6 4.8472 0.6253 5.8883 28 8 5.3238 1.8597 6.1883 29 6 4.1457 0.4184 4.7147 30 8 2.6271 -0.1463 2.2303 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5139 -0.8899 33 1 3.5346 1.7703 0.0321 34 1 1.5615 2.4679 -1.2085 35 1 1.2466 -2.7433 0.8930 36 1 2.4304 -3.2076 3.2685 37 1 3.4898 -2.8982 5.0633 38 1 4.7364 -2.5425 7.1310 39 1 5.6762 -2.1465 8.6464 40 1 7.7631 -0.6960 9.8784 41 1 6.2417 -0.3138 10.7195 42 1 8.6719 -2.7428 12.0827 43 1 7.7275 -1.2751 12.5877 44 1 6.0719 -5.0792 10.7301 45 1 6.9506 -7.5130 11.2941 46 1 5.1142 -1.7480 12.0938 47 1 4.9667 -3.4133 11.3824 48 1 4.7072 2.4073 6.6933 49 1 3.9751 1.2393 4.0338 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946166_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:26:11 Heat of formation + Delta-G solvation = 75.180937 kcal Electronic energy + Delta-G solvation = -35285.256446 eV Core-core repulsion = 30377.787526 eV Total energy + Delta-G solvation = -4907.468919 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -44.29165 -43.73301 -41.56998 -40.48836 -39.45693 -38.08595 -37.81113 -35.81169 -34.28580 -33.97704 -33.28809 -31.97448 -31.31559 -30.62918 -29.14441 -27.01393 -26.91369 -25.31467 -24.21563 -24.00530 -23.55183 -22.63565 -22.32863 -21.95130 -21.33176 -20.75387 -19.74188 -18.84523 -18.50560 -18.03447 -17.71128 -17.53679 -17.38484 -17.17162 -16.69836 -16.47369 -16.28366 -16.10527 -15.99750 -15.74431 -15.66576 -15.41032 -15.09509 -14.84405 -14.62916 -14.39563 -14.27501 -13.98112 -13.86979 -13.79100 -13.57625 -13.56404 -13.48123 -13.18438 -12.82299 -12.72178 -12.67539 -12.27010 -12.17737 -11.96189 -11.87576 -11.72141 -11.62890 -11.11651 -10.99769 -10.84126 -10.72441 -10.57762 -10.33698 -10.11164 -9.92011 -8.99648 -5.06376 -0.76504 0.17954 0.65336 0.66042 1.13045 1.40400 1.40701 1.46983 1.62614 1.75003 1.87010 1.95598 2.06986 2.68043 3.03799 3.05899 3.24975 3.30305 3.42560 3.48980 3.60365 3.65994 3.72426 3.74842 3.88742 4.00268 4.03863 4.12278 4.17200 4.24900 4.30420 4.31997 4.33646 4.43308 4.45154 4.62804 4.65524 4.69032 4.71997 4.76343 4.80526 4.80882 4.89073 4.92629 4.97688 5.09252 5.12881 5.17493 5.24758 5.28312 5.40550 5.43836 5.57042 5.74352 5.97783 6.50577 6.60190 6.73754 7.20577 7.53616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.024 4.024 3 Si 0.769 3.231 4 C -0.054 4.054 5 C -0.184 4.184 6 C -0.173 4.173 7 C 0.005 3.995 8 C 0.024 3.976 9 C -0.110 4.110 10 C -0.049 4.049 11 C -0.179 4.179 12 C 0.555 3.445 13 O -0.565 6.565 14 N -0.710 5.710 15 C 0.134 3.866 16 C -0.115 4.115 17 H 0.113 0.887 18 C -0.131 4.131 19 C 0.096 3.904 20 H 0.126 0.874 21 N -0.268 5.268 22 C -0.033 4.033 23 C -0.069 4.069 24 N -0.320 5.320 25 N -0.131 5.131 26 C -0.118 4.118 27 C 0.159 3.841 28 O -0.497 6.497 29 C -0.154 4.154 30 O -0.175 6.175 31 H 0.399 0.601 32 H 0.138 0.862 33 H -0.298 1.298 34 H -0.278 1.278 35 H 0.165 0.835 36 H 0.183 0.817 37 H 0.169 0.831 38 H 0.177 0.823 39 H 0.416 0.584 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.235 0.765 45 H 0.213 0.787 46 H 0.128 0.872 47 H 0.104 0.896 48 H 0.409 0.591 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 -1.480 -1.376 7.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.134 4.134 3 Si 0.675 3.325 4 C -0.104 4.104 5 C -0.203 4.203 6 C -0.191 4.191 7 C -0.044 4.044 8 C 0.023 3.977 9 C -0.128 4.128 10 C -0.068 4.068 11 C -0.182 4.182 12 C 0.343 3.657 13 O -0.445 6.445 14 N -0.363 5.363 15 C 0.010 3.990 16 C -0.134 4.134 17 H 0.131 0.869 18 C -0.170 4.170 19 C -0.006 4.006 20 H 0.144 0.856 21 N -0.062 5.062 22 C -0.184 4.184 23 C -0.227 4.227 24 N -0.185 5.185 25 N -0.110 5.110 26 C -0.156 4.156 27 C 0.112 3.888 28 O -0.310 6.310 29 C -0.173 4.173 30 O -0.073 6.073 31 H 0.250 0.750 32 H 0.155 0.845 33 H -0.225 1.225 34 H -0.204 1.204 35 H 0.182 0.818 36 H 0.200 0.800 37 H 0.187 0.813 38 H 0.194 0.806 39 H 0.254 0.746 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.143 0.857 44 H 0.252 0.748 45 H 0.230 0.770 46 H 0.146 0.854 47 H 0.123 0.877 48 H 0.269 0.731 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.387 -0.307 -0.969 5.482 hybrid contribution -0.531 -0.567 -1.086 1.335 sum -5.918 -0.874 -2.055 6.325 Atomic orbital electron populations 1.86534 1.15854 1.82075 1.50359 1.24394 0.85438 1.10826 0.92787 0.93388 0.78005 0.75833 0.85322 1.23209 1.00619 0.94321 0.92279 1.21838 1.04251 0.95713 0.98536 1.22239 1.00916 0.98998 0.96969 1.20628 1.04496 0.87938 0.91340 1.17960 0.95526 0.94014 0.90193 1.21074 0.99378 0.99254 0.93108 1.21190 0.93574 0.95175 0.96814 1.20539 1.05501 0.96060 0.96136 1.18202 0.79481 0.84450 0.83585 1.90838 1.51769 1.25659 1.76253 1.45711 1.57086 1.12338 1.21187 1.21312 0.96301 0.97110 0.84257 1.22906 0.97119 0.97789 0.95585 0.86906 1.23369 0.97298 1.00984 0.95306 1.22879 1.00506 0.73301 1.03892 0.85572 1.47458 1.35565 1.10751 1.12395 1.24276 1.06529 0.90996 0.96634 1.24271 1.02834 1.00361 0.95199 1.75106 1.20005 1.10462 1.12892 1.78311 1.16628 0.98021 1.18018 1.23570 0.95627 1.03518 0.92863 1.18515 0.92238 0.85847 0.92184 1.84737 1.45728 1.23684 1.76829 1.21582 0.99547 0.98132 0.98024 1.83923 1.57871 1.38570 1.26889 0.74981 0.84533 1.22546 1.20390 0.81768 0.79969 0.81316 0.80584 0.74563 0.92598 0.90725 0.91628 0.85691 0.74847 0.77010 0.85390 0.87740 0.73094 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.42 12.88 -148.98 -1.92 -0.50 16 2 C -0.02 0.05 2.98 71.24 0.21 0.26 16 3 Si 0.77 -1.14 32.11 68.60 2.20 1.06 16 4 C -0.05 0.01 6.21 24.90 0.15 0.16 16 5 C -0.18 0.24 10.78 22.11 0.24 0.48 16 6 C -0.17 0.55 10.26 22.40 0.23 0.78 16 7 C 0.01 0.00 7.02 24.24 0.17 0.17 16 8 C 0.02 -0.05 5.87 -20.08 -0.12 -0.16 16 9 C -0.11 0.90 9.48 22.26 0.21 1.11 16 10 C -0.05 0.46 9.47 22.24 0.21 0.67 16 11 C -0.18 0.27 5.89 -19.97 -0.12 0.15 16 12 C 0.55 0.44 7.75 86.62 0.67 1.11 16 13 O -0.57 -5.76 15.14 16.90 0.26 -5.50 16 14 N -0.71 5.79 5.50 -466.52 -2.57 3.22 16 15 C 0.13 -1.09 5.50 86.38 0.47 -0.62 16 16 C -0.12 1.50 3.33 -10.27 -0.03 1.47 16 17 H 0.11 -1.66 6.99 -2.39 -0.02 -1.68 16 18 C -0.13 1.21 7.44 31.13 0.23 1.44 16 19 C 0.10 -0.79 5.11 45.58 0.23 -0.56 16 20 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 21 N -0.27 0.36 3.52 -324.39 -1.14 -0.78 16 22 C -0.03 0.20 9.69 83.49 0.81 1.01 16 23 C -0.07 -0.01 12.05 83.73 1.01 1.00 16 24 N -0.32 -3.21 12.41 -58.25 -0.72 -3.93 16 25 N -0.13 -1.14 13.17 37.02 0.49 -0.65 16 26 C -0.12 1.77 6.89 31.18 0.21 1.98 16 27 C 0.16 0.38 6.71 22.81 0.15 0.54 16 28 O -0.50 -2.62 11.56 -68.97 -0.80 -3.42 16 29 C -0.15 -0.14 9.65 22.61 0.22 0.08 16 30 O -0.17 -0.29 8.79 -6.03 -0.05 -0.35 16 31 H 0.40 -4.11 8.70 -74.06 -0.64 -4.75 16 32 H 0.14 -0.41 7.96 -2.39 -0.02 -0.43 16 33 H -0.30 -1.82 7.11 99.48 0.71 -1.11 16 34 H -0.28 -1.04 7.11 99.48 0.71 -0.33 16 35 H 0.16 -0.61 8.06 -2.91 -0.02 -0.64 16 36 H 0.18 -1.75 7.24 -2.91 -0.02 -1.77 16 37 H 0.17 -2.42 6.95 -2.91 -0.02 -2.44 16 38 H 0.18 -3.22 6.37 -2.91 -0.02 -3.24 16 39 H 0.42 -6.54 6.48 -92.71 -0.60 -7.14 16 40 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.07 -0.54 7.88 -2.39 -0.02 -0.55 16 42 H 0.06 -0.30 8.14 -2.38 -0.02 -0.32 16 43 H 0.12 -1.43 8.10 -2.39 -0.02 -1.45 16 44 H 0.24 -3.99 6.74 -2.91 -0.02 -4.01 16 45 H 0.21 -1.37 8.06 -2.91 -0.02 -1.39 16 46 H 0.13 -2.12 7.92 -2.39 -0.02 -2.14 16 47 H 0.10 -1.87 6.98 -2.39 -0.02 -1.88 16 48 H 0.41 -0.87 9.06 -74.06 -0.67 -1.54 16 49 H 0.14 0.15 7.90 -2.91 -0.02 0.12 16 Total: 0.00 -37.85 417.19 0.10 -37.75 By element: Atomic # 1 Polarization: -37.15 SS G_CDS: -0.82 Total: -37.97 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.17 Total: 11.06 kcal Atomic # 7 Polarization: 1.81 SS G_CDS: -3.95 Total: -2.14 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -2.51 Total: -9.77 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.20 Total: 1.06 kcal Total: -37.85 0.10 -37.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.934 kcal (2) G-P(sol) polarization free energy of solvation -37.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds