Wall clock time and date at job start Sun Mar 7 2021 13:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86296 * 109.47406 * 2 1 4 4 C 1.50699 * 109.47163 * 239.99404 * 2 1 3 5 5 C 1.38706 * 120.03086 * 285.00338 * 4 2 1 6 6 O 1.35899 * 120.05858 * 359.97438 * 5 4 2 7 7 C 1.42901 * 117.00338 * 179.72544 * 6 5 4 8 8 C 1.50697 * 109.47119 * 180.02562 * 7 6 5 9 9 O 1.21281 * 120.00364 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00012 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00119 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.47108 * 179.97438 * 11 10 8 13 13 H 1.09002 * 112.85043 * 314.66487 * 12 11 10 14 14 C 1.53785 * 113.69093 * 85.93603 * 12 11 10 15 15 C 1.53779 * 87.08093 * 139.99088 * 14 12 11 16 16 H 1.08999 * 113.68761 * 220.00455 * 15 14 12 17 17 N 1.46504 * 113.61484 * 89.11287 * 15 14 12 18 18 C 1.35311 * 125.86436 * 347.22150 * 17 15 14 19 19 C 1.35357 * 106.17203 * 179.90380 * 18 17 15 20 20 N 1.33770 * 106.49507 * 0.34805 * 19 18 17 21 21 N 1.28634 * 108.88820 * 359.77589 * 20 19 18 22 22 C 1.53781 * 113.61293 * 183.47228 * 12 11 10 23 23 C 1.38758 * 119.88737 * 179.72527 * 5 4 2 24 24 C 1.38119 * 119.94327 * 0.27488 * 23 5 4 25 25 C 1.38285 * 120.05507 * 0.02562 * 24 23 5 26 26 C 1.38169 * 120.02372 * 105.32457 * 4 2 1 27 27 H 0.96707 * 113.99957 * 60.00064 * 1 2 3 28 28 H 1.09012 * 109.46962 * 119.99945 * 2 1 3 29 29 H 1.48496 * 110.00107 * 298.68005 * 3 2 1 30 30 H 1.48500 * 110.00088 * 59.99914 * 3 2 1 31 31 H 1.09000 * 109.46782 * 59.99644 * 7 6 5 32 32 H 1.08996 * 109.46997 * 299.99560 * 7 6 5 33 33 H 0.96997 * 119.99419 * 359.97438 * 10 8 7 34 34 H 1.09005 * 109.46936 * 59.99437 * 11 10 8 35 35 H 1.09004 * 109.46937 * 300.00111 * 11 10 8 36 36 H 1.09003 * 113.60734 * 254.54208 * 14 12 11 37 37 H 1.08996 * 113.61146 * 25.43706 * 14 12 11 38 38 H 1.07997 * 126.91659 * 0.02562 * 18 17 15 39 39 H 1.07999 * 126.75138 * 180.12917 * 19 18 17 40 40 H 1.09005 * 113.61302 * 334.47929 * 22 12 11 41 41 H 1.08993 * 113.62030 * 105.38774 * 22 12 11 42 42 H 1.08004 * 120.02472 * 180.25659 * 23 5 4 43 43 H 1.08003 * 119.96895 * 180.02562 * 24 23 5 44 44 H 1.08002 * 119.93869 * 179.97438 * 25 24 23 45 45 H 1.08000 * 119.97591 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8696 -2.0941 -1.3068 6 8 1.3567 -2.8108 -0.2723 7 6 1.3189 -4.2313 -0.4229 8 6 0.7223 -4.8519 0.8141 9 8 0.3651 -4.1471 1.7342 10 7 0.5866 -6.1902 0.8983 11 6 0.0072 -6.7935 2.1010 12 6 -0.0334 -8.3144 1.9398 13 1 -0.4063 -8.6268 0.9643 14 6 1.2718 -9.0146 2.3536 15 6 0.3931 -10.1097 2.9809 16 1 0.7665 -10.4766 3.9369 17 7 0.0485 -11.1893 2.0524 18 6 0.2200 -11.1656 0.7104 19 6 -0.2266 -12.3584 0.2522 20 7 -0.6510 -13.0412 1.3214 21 7 -0.4743 -12.3211 2.3725 22 6 -0.7043 -9.0410 3.1173 23 6 2.3277 -2.7449 -2.4434 24 6 2.8491 -2.0143 -3.4933 25 6 2.9152 -0.6354 -3.4120 26 6 2.4598 0.0153 -2.2805 27 1 -0.3933 0.4417 -0.7651 28 1 1.7923 -0.5139 0.8901 29 1 1.5880 2.4585 -1.2242 30 1 1.5615 2.4679 1.2085 31 1 2.3314 -4.6084 -0.5669 32 1 0.7086 -4.4889 -1.2885 33 1 0.8727 -6.7538 0.1625 34 1 -1.0054 -6.4165 2.2448 35 1 0.6172 -6.5356 2.9668 36 1 1.8671 -9.3627 1.5094 37 1 1.8565 -8.4531 3.0822 38 1 0.6323 -10.3584 0.1233 39 1 -0.2410 -12.6918 -0.7749 40 1 -0.6598 -8.4867 4.0549 41 1 -1.7042 -9.4104 2.8900 42 1 2.2769 -3.8219 -2.5070 43 1 3.2054 -2.5204 -4.3783 44 1 3.3236 -0.0660 -4.2338 45 1 2.5132 1.0923 -2.2192 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946166_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:27:40 Heat of formation + Delta-G solvation = 63.131868 kcal Electronic energy + Delta-G solvation = -29004.816046 eV Core-core repulsion = 24800.185253 eV Total energy + Delta-G solvation = -4204.630793 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.32136 -41.60906 -40.87524 -40.06246 -38.51034 -37.60287 -35.90823 -33.94361 -32.75470 -32.00448 -31.39209 -30.31080 -28.28097 -26.98580 -26.68067 -25.19159 -23.58226 -23.49220 -22.61175 -22.56339 -21.70430 -20.73398 -19.50326 -18.57006 -18.13468 -17.95790 -17.51211 -17.39081 -17.08576 -16.89882 -16.57948 -16.22735 -16.03927 -15.89619 -15.64925 -15.43596 -15.19496 -15.01638 -14.87238 -14.72888 -14.18330 -13.88676 -13.71582 -13.60298 -13.46232 -13.21509 -13.03660 -12.73805 -12.52407 -12.22129 -12.09824 -11.99529 -11.88039 -11.75755 -11.69668 -11.65795 -11.06001 -10.91289 -10.53335 -10.36307 -10.21329 -9.95573 -9.19361 -4.95697 0.25655 0.44271 0.62613 1.29071 1.37343 1.45023 1.50732 1.54289 1.60146 1.93509 2.59986 2.72203 3.02897 3.20964 3.43012 3.45833 3.57371 3.62845 3.69232 3.74332 3.92157 4.00503 4.07847 4.09068 4.13419 4.15532 4.27506 4.30855 4.34319 4.39209 4.41390 4.55655 4.59398 4.65149 4.68969 4.71960 4.76850 4.86804 4.94058 4.99943 5.12792 5.25712 5.30353 5.32928 5.39815 5.55568 5.71366 5.78091 6.29737 6.47948 6.52698 7.13449 7.51062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.081 4.081 3 Si 0.781 3.219 4 C -0.165 4.165 5 C 0.130 3.870 6 O -0.314 6.314 7 C 0.035 3.965 8 C 0.511 3.489 9 O -0.573 6.573 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.114 4.114 13 H 0.115 0.885 14 C -0.118 4.118 15 C 0.096 3.904 16 H 0.127 0.873 17 N -0.268 5.268 18 C -0.033 4.033 19 C -0.068 4.068 20 N -0.319 5.319 21 N -0.131 5.131 22 C -0.131 4.131 23 C -0.210 4.210 24 C -0.075 4.075 25 C -0.155 4.155 26 C -0.089 4.089 27 H 0.381 0.619 28 H 0.097 0.903 29 H -0.266 1.266 30 H -0.309 1.309 31 H 0.128 0.872 32 H 0.119 0.881 33 H 0.422 0.578 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.235 0.765 39 H 0.214 0.786 40 H 0.124 0.876 41 H 0.066 0.934 42 H 0.157 0.843 43 H 0.154 0.846 44 H 0.149 0.851 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 1.144 -7.884 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.189 4.189 3 Si 0.685 3.315 4 C -0.166 4.166 5 C 0.085 3.915 6 O -0.227 6.227 7 C -0.042 4.042 8 C 0.297 3.703 9 O -0.452 6.452 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.132 4.132 13 H 0.133 0.867 14 C -0.156 4.156 15 C -0.005 4.005 16 H 0.144 0.856 17 N -0.062 5.062 18 C -0.184 4.184 19 C -0.226 4.226 20 N -0.184 5.184 21 N -0.110 5.110 22 C -0.170 4.170 23 C -0.229 4.229 24 C -0.092 4.092 25 C -0.173 4.173 26 C -0.107 4.107 27 H 0.230 0.770 28 H 0.115 0.885 29 H -0.192 1.192 30 H -0.237 1.237 31 H 0.145 0.855 32 H 0.137 0.863 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.145 0.855 38 H 0.251 0.749 39 H 0.230 0.770 40 H 0.142 0.858 41 H 0.085 0.915 42 H 0.175 0.825 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 6.715 1.300 -5.290 8.647 hybrid contribution -1.038 -0.079 -1.280 1.650 sum 5.677 1.221 -6.570 8.768 Atomic orbital electron populations 1.86649 1.19006 1.80325 1.49685 1.25180 0.83222 1.12238 0.98251 0.94075 0.89883 0.71075 0.76492 1.19695 1.06750 0.91561 0.98585 1.19050 0.94071 0.91027 0.87391 1.86190 1.78067 1.18874 1.39541 1.22732 1.04651 0.79863 0.96998 1.20537 0.78423 0.83097 0.88276 1.90794 1.50331 1.62680 1.41347 1.45597 1.63860 1.05394 1.21257 1.21312 0.98559 0.91620 0.87493 1.22901 0.97418 0.92489 1.00434 0.86724 1.23536 0.95968 0.93218 1.02877 1.22833 0.99973 0.84425 0.93290 0.85558 1.47460 1.38605 1.12453 1.07698 1.24272 1.07037 1.02916 0.84204 1.24275 1.04153 0.93260 1.00951 1.75104 1.19732 1.26368 0.97205 1.78312 1.17158 0.93153 1.22342 1.23375 0.97559 0.95074 1.01027 1.21600 1.05534 1.01901 0.93846 1.21402 0.95426 0.94127 0.98292 1.21396 1.02130 0.95209 0.98598 1.21178 0.96504 1.00453 0.92523 0.77034 0.88459 1.19249 1.23734 0.85490 0.86321 0.73986 0.92628 0.90993 0.87708 0.85473 0.74874 0.76977 0.85793 0.91550 0.82534 0.82855 0.83362 0.83818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -5.31 12.88 -148.98 -1.92 -7.23 16 2 C -0.08 -0.46 2.38 71.24 0.17 -0.29 16 3 Si 0.78 0.64 30.23 68.60 2.07 2.72 16 4 C -0.16 -0.51 5.27 -19.77 -0.10 -0.61 16 5 C 0.13 0.35 6.66 22.51 0.15 0.50 16 6 O -0.31 -1.83 9.00 -73.38 -0.66 -2.49 16 7 C 0.04 -0.16 5.22 71.23 0.37 0.21 16 8 C 0.51 0.26 7.91 87.65 0.69 0.95 16 9 O -0.57 -7.75 16.50 16.00 0.26 -7.48 16 10 N -0.71 6.23 5.56 -463.05 -2.57 3.66 16 11 C 0.13 -1.02 5.50 86.38 0.48 -0.54 16 12 C -0.11 1.44 3.33 -10.27 -0.03 1.41 16 13 H 0.11 -1.67 6.96 -2.39 -0.02 -1.69 16 14 C -0.12 1.70 6.88 31.12 0.21 1.92 16 15 C 0.10 -0.74 5.11 45.52 0.23 -0.51 16 16 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 17 N -0.27 0.25 3.52 -324.65 -1.14 -0.90 16 18 C -0.03 0.19 9.68 83.49 0.81 0.99 16 19 C -0.07 -0.03 12.05 83.73 1.01 0.98 16 20 N -0.32 -3.30 12.41 -58.25 -0.72 -4.03 16 21 N -0.13 -1.19 13.17 37.02 0.49 -0.70 16 22 C -0.13 1.14 7.44 31.12 0.23 1.37 16 23 C -0.21 0.79 9.04 22.37 0.20 0.99 16 24 C -0.07 0.39 10.04 22.25 0.22 0.61 16 25 C -0.16 0.61 10.04 22.28 0.22 0.83 16 26 C -0.09 0.11 8.66 22.25 0.19 0.30 16 27 H 0.38 0.89 8.70 -74.05 -0.64 0.25 16 28 H 0.10 0.84 7.83 -2.38 -0.02 0.82 16 29 H -0.27 -0.44 6.70 99.48 0.67 0.22 16 30 H -0.31 -2.85 7.11 99.48 0.71 -2.14 16 31 H 0.13 -1.49 7.66 -2.39 -0.02 -1.51 16 32 H 0.12 -1.21 7.66 -2.39 -0.02 -1.23 16 33 H 0.42 -7.27 8.47 -92.71 -0.79 -8.06 16 34 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 35 H 0.07 -0.42 7.88 -2.39 -0.02 -0.44 16 36 H 0.10 -1.82 6.99 -2.39 -0.02 -1.83 16 37 H 0.13 -2.01 7.92 -2.39 -0.02 -2.03 16 38 H 0.23 -3.87 6.73 -2.91 -0.02 -3.89 16 39 H 0.21 -1.31 8.06 -2.91 -0.02 -1.33 16 40 H 0.12 -1.32 8.10 -2.38 -0.02 -1.33 16 41 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.16 -1.64 6.30 -2.91 -0.02 -1.66 16 43 H 0.15 -1.61 8.06 -2.91 -0.02 -1.63 16 44 H 0.15 -1.22 8.06 -2.91 -0.02 -1.25 16 45 H 0.14 -0.58 4.86 -2.91 -0.01 -0.60 16 Total: 0.00 -38.61 376.94 0.48 -38.13 By element: Atomic # 1 Polarization: -30.40 SS G_CDS: -0.38 Total: -30.79 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 5.06 Total: 9.11 kcal Atomic # 7 Polarization: 1.98 SS G_CDS: -3.95 Total: -1.97 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -2.32 Total: -17.20 kcal Atomic # 14 Polarization: 0.64 SS G_CDS: 2.07 Total: 2.72 kcal Total: -38.61 0.48 -38.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.257 kcal (2) G-P(sol) polarization free energy of solvation -38.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds