Wall clock time and date at job start Sun Mar 7 2021 13:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.46656 * 2 1 4 4 C 1.50704 * 109.46972 * 119.99566 * 2 1 3 5 5 C 1.38243 * 119.97200 * 245.00302 * 4 2 1 6 6 C 1.38283 * 120.11105 * 180.02562 * 5 4 2 7 7 C 1.38121 * 120.05639 * 359.97438 * 6 5 4 8 8 C 1.38749 * 119.94660 * 359.97438 * 7 6 5 9 9 O 1.35901 * 120.05773 * 180.02562 * 8 7 6 10 10 C 1.42895 * 117.00296 * 359.97438 * 9 8 7 11 11 C 1.52992 * 109.47606 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47482 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 11 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.46983 * 180.02562 * 16 15 13 18 18 H 1.09003 * 112.84890 * 43.80507 * 17 16 15 19 19 C 1.53782 * 113.61732 * 175.00412 * 17 16 15 20 20 C 1.53778 * 87.08476 * 139.98256 * 19 17 16 21 21 H 1.09002 * 113.61341 * 219.93947 * 20 19 17 22 22 N 1.46498 * 113.61864 * 89.11423 * 20 19 17 23 23 C 1.35308 * 125.86823 * 275.00256 * 22 20 19 24 24 C 1.35358 * 106.17595 * 179.97438 * 23 22 20 25 25 N 1.33771 * 106.49555 * 0.02562 * 24 23 22 26 26 N 1.28640 * 108.88225 * 359.73731 * 25 24 23 27 27 C 1.53787 * 113.61418 * 272.50075 * 17 16 15 28 28 C 1.38165 * 119.96900 * 65.25583 * 4 2 1 29 29 H 0.96697 * 113.99867 * 60.00941 * 1 2 3 30 30 H 1.08994 * 109.46933 * 239.99887 * 2 1 3 31 31 H 1.48494 * 110.00595 * 59.99860 * 3 2 1 32 32 H 1.48506 * 109.99708 * 181.32066 * 3 2 1 33 33 H 1.08002 * 119.94319 * 359.97438 * 5 4 2 34 34 H 1.07998 * 119.96999 * 179.97438 * 6 5 4 35 35 H 1.08006 * 120.02791 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.47063 * 60.00108 * 10 9 8 37 37 H 1.09001 * 109.46798 * 300.00375 * 10 9 8 38 38 H 1.09002 * 109.47103 * 59.99788 * 11 10 9 39 39 H 1.08998 * 109.46862 * 300.00600 * 11 10 9 40 40 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 41 41 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 42 42 H 0.96995 * 120.00011 * 0.02562 * 15 13 12 43 43 H 1.09001 * 109.47487 * 300.00114 * 16 15 13 44 44 H 1.09002 * 109.47182 * 60.00342 * 16 15 13 45 45 H 1.09010 * 113.61095 * 254.53119 * 19 17 16 46 46 H 1.08996 * 113.61512 * 25.42626 * 19 17 16 47 47 H 1.08005 * 126.91342 * 359.97438 * 23 22 20 48 48 H 1.07997 * 126.75032 * 180.02562 * 24 23 22 49 49 H 1.08992 * 113.61461 * 334.56265 * 27 17 16 50 50 H 1.08996 * 113.61698 * 105.47303 * 27 17 16 51 51 H 1.08000 * 120.03541 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2306 5 6 2.6387 -0.0115 2.1910 6 6 3.1014 -0.6606 3.3210 7 6 2.8573 -2.0091 3.4930 8 6 2.1467 -2.7126 2.5310 9 8 1.9049 -4.0394 2.6981 10 6 2.4120 -4.6465 3.8881 11 6 2.0446 -6.1316 3.8996 12 6 2.5871 -6.7815 5.1740 13 6 2.2246 -8.2442 5.1855 14 8 1.5948 -8.7201 4.2648 15 7 2.6013 -9.0236 6.2185 16 6 2.2493 -10.4457 6.2294 17 6 2.7917 -11.0955 7.5039 18 1 2.6234 -10.4882 8.3933 19 6 2.3718 -12.5652 7.6729 20 6 3.7964 -12.8314 8.1869 21 1 4.2205 -13.7704 7.8314 22 7 3.9411 -12.6534 9.6339 23 6 4.1791 -11.4825 10.2688 24 6 4.2380 -11.7747 11.5891 25 7 4.0364 -13.0928 11.6958 26 7 3.8586 -13.5833 10.5200 27 6 4.2361 -11.6058 7.3685 28 6 1.6891 -2.0606 1.3953 29 1 -0.3933 0.4416 -0.7651 30 1 1.7923 -0.5138 -0.8899 31 1 1.5614 2.4680 1.2084 32 1 3.5346 1.7703 -0.0322 33 1 2.8309 1.0429 2.0582 34 1 3.6541 -0.1125 4.0697 35 1 3.2193 -2.5157 4.3755 36 1 1.9766 -4.1574 4.7595 37 1 3.4965 -4.5406 3.9161 38 1 2.4803 -6.6204 3.0282 39 1 0.9602 -6.2378 3.8712 40 1 2.1510 -6.2925 6.0451 41 1 3.6716 -6.6753 5.2026 42 1 3.1053 -8.6431 6.9547 43 1 1.1649 -10.5519 6.2011 44 1 2.6852 -10.9345 5.3581 45 1 1.6000 -12.7147 8.4281 46 1 2.1465 -13.0660 6.7313 47 1 4.2982 -10.5103 9.8136 48 1 4.4133 -11.0802 12.3974 49 1 4.5207 -11.8444 6.3438 50 1 4.9696 -10.9809 7.8780 51 1 1.1404 -2.6071 0.6426 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946166_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:27:56 Heat of formation + Delta-G solvation = 46.173770 kcal Electronic energy + Delta-G solvation = -31519.214176 eV Core-core repulsion = 27002.772787 eV Total energy + Delta-G solvation = -4516.441389 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.32879 -41.38178 -41.02458 -40.11619 -39.16418 -37.35908 -35.87805 -34.92012 -33.88759 -32.67801 -32.01040 -31.42693 -29.81072 -27.92621 -26.99650 -26.79914 -25.18030 -23.82114 -23.58735 -23.38885 -22.53797 -21.83116 -21.46135 -20.68005 -18.99759 -18.42873 -18.32248 -17.98197 -17.53021 -17.50440 -17.45829 -17.05508 -17.00646 -16.57612 -16.20228 -15.89899 -15.69329 -15.50660 -15.24106 -15.16917 -14.80337 -14.62826 -14.54786 -14.33985 -14.09208 -13.84759 -13.61351 -13.53560 -13.35453 -13.21796 -13.13357 -12.73623 -12.63271 -12.43513 -12.26585 -12.20332 -12.11462 -11.99687 -11.77043 -11.75643 -11.68381 -11.64081 -11.04606 -10.87739 -10.38903 -10.37127 -10.10858 -9.99986 -9.37409 -4.93349 0.08793 0.25116 0.61749 1.27803 1.36512 1.59271 1.63062 1.65303 1.89619 1.97306 2.34268 2.52644 3.02494 3.21180 3.39264 3.45299 3.58994 3.63889 3.68900 3.73948 3.81533 3.84825 3.87033 4.00155 4.08798 4.11442 4.14559 4.16265 4.26567 4.29646 4.32051 4.35117 4.39749 4.41333 4.43894 4.59003 4.60640 4.64565 4.65628 4.73624 4.76721 4.86363 4.88531 4.93856 5.00808 5.09061 5.14350 5.19148 5.22289 5.25020 5.31199 5.44803 5.59327 5.70573 6.33737 6.54475 6.87949 7.26610 7.50165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.088 4.088 3 Si 0.785 3.215 4 C -0.053 4.053 5 C -0.184 4.184 6 C -0.074 4.074 7 C -0.204 4.204 8 C 0.123 3.877 9 O -0.334 6.334 10 C 0.055 3.945 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.507 3.493 14 O -0.592 6.592 15 N -0.716 5.716 16 C 0.131 3.869 17 C -0.114 4.114 18 H 0.113 0.887 19 C -0.131 4.131 20 C 0.096 3.904 21 H 0.126 0.874 22 N -0.268 5.268 23 C -0.033 4.033 24 C -0.068 4.068 25 N -0.319 5.319 26 N -0.131 5.131 27 C -0.118 4.118 28 C -0.147 4.147 29 H 0.404 0.596 30 H 0.091 0.909 31 H -0.294 1.294 32 H -0.286 1.286 33 H 0.120 0.880 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.420 0.580 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.124 0.876 47 H 0.234 0.766 48 H 0.214 0.786 49 H 0.126 0.874 50 H 0.103 0.897 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.521 6.836 -1.709 8.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.197 4.197 3 Si 0.690 3.310 4 C -0.053 4.053 5 C -0.202 4.202 6 C -0.092 4.092 7 C -0.223 4.223 8 C 0.078 3.922 9 O -0.248 6.248 10 C -0.019 4.019 11 C -0.140 4.140 12 C -0.167 4.167 13 C 0.295 3.705 14 O -0.472 6.472 15 N -0.369 5.369 16 C 0.007 3.993 17 C -0.132 4.132 18 H 0.131 0.869 19 C -0.170 4.170 20 C -0.006 4.006 21 H 0.144 0.856 22 N -0.062 5.062 23 C -0.185 4.185 24 C -0.226 4.226 25 N -0.184 5.184 26 N -0.109 5.109 27 C -0.156 4.156 28 C -0.166 4.166 29 H 0.255 0.745 30 H 0.109 0.891 31 H -0.221 1.221 32 H -0.213 1.213 33 H 0.138 0.862 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.257 0.743 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.142 0.858 47 H 0.250 0.750 48 H 0.230 0.770 49 H 0.145 0.855 50 H 0.121 0.879 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.310 5.050 -1.272 6.760 hybrid contribution 0.170 0.312 0.471 0.590 sum 4.480 5.363 -0.801 7.034 Atomic orbital electron populations 1.86451 1.17201 1.82525 1.51340 1.25001 0.85971 1.11772 0.96948 0.94297 0.77280 0.74761 0.84620 1.19491 0.96913 0.93112 0.95768 1.21021 1.03402 0.99468 0.96291 1.21225 0.97133 0.94135 0.96695 1.21590 1.03913 0.95713 1.01042 1.19176 0.95062 0.83280 0.94683 1.86061 1.74701 1.19862 1.44171 1.23059 1.00052 0.93170 0.85664 1.21158 1.01930 0.92303 0.98642 1.21533 1.05408 0.90129 0.99645 1.21137 0.78112 0.89872 0.81359 1.90752 1.41961 1.76648 1.37849 1.45851 1.57638 1.09683 1.23701 1.21267 0.99813 0.80681 0.97518 1.22891 0.96222 0.95836 0.98278 0.86911 1.23376 0.94315 0.96331 1.03023 1.22840 1.00920 1.03928 0.72889 0.85600 1.47452 1.43778 1.05944 1.09011 1.24267 1.07005 0.94127 0.93086 1.24271 1.07001 0.93120 0.98187 1.75107 1.17266 1.11246 1.14780 1.78311 1.21892 1.17593 0.93149 1.23529 0.96920 0.93467 1.01681 1.20387 1.03977 0.94149 0.98094 0.74501 0.89089 1.22146 1.21320 0.86223 0.82709 0.82148 0.89941 0.89595 0.91976 0.92322 0.85547 0.85167 0.74284 0.92780 0.91297 0.91590 0.85808 0.74952 0.76965 0.85550 0.87901 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.14 12.81 -148.98 -1.91 -3.05 16 2 C -0.09 -0.13 2.79 71.24 0.20 0.07 16 3 Si 0.79 -1.21 29.85 68.60 2.05 0.83 16 4 C -0.05 -0.37 5.38 -19.88 -0.11 -0.47 16 5 C -0.18 -1.07 8.67 22.28 0.19 -0.88 16 6 C -0.07 -0.16 10.04 22.25 0.22 0.06 16 7 C -0.20 -0.32 9.04 22.36 0.20 -0.12 16 8 C 0.12 0.78 6.69 22.51 0.15 0.93 16 9 O -0.33 -1.97 10.14 -92.44 -0.94 -2.90 16 10 C 0.05 -0.18 4.74 71.98 0.34 0.17 16 11 C -0.10 0.17 4.87 30.59 0.15 0.32 16 12 C -0.13 1.20 5.70 29.85 0.17 1.37 16 13 C 0.51 -1.24 7.83 87.66 0.69 -0.56 16 14 O -0.59 -5.49 15.98 -3.03 -0.05 -5.54 16 15 N -0.72 6.81 5.56 -463.06 -2.57 4.23 16 16 C 0.13 -1.04 5.51 86.38 0.48 -0.56 16 17 C -0.11 1.42 3.34 -10.27 -0.03 1.38 16 18 H 0.11 -1.60 6.98 -2.39 -0.02 -1.62 16 19 C -0.13 1.13 7.44 31.12 0.23 1.36 16 20 C 0.10 -0.71 5.11 45.52 0.23 -0.48 16 21 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 22 N -0.27 0.18 3.52 -324.65 -1.14 -0.96 16 23 C -0.03 0.18 9.68 83.49 0.81 0.99 16 24 C -0.07 -0.05 12.05 83.73 1.01 0.96 16 25 N -0.32 -3.35 12.41 -58.25 -0.72 -4.07 16 26 N -0.13 -1.21 13.16 37.02 0.49 -0.72 16 27 C -0.12 1.66 6.88 31.13 0.21 1.87 16 28 C -0.15 -1.24 9.63 22.37 0.22 -1.02 16 29 H 0.40 -3.65 8.74 -74.06 -0.65 -4.29 16 30 H 0.09 -0.19 7.96 -2.39 -0.02 -0.21 16 31 H -0.29 -1.60 7.05 99.48 0.70 -0.90 16 32 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 33 H 0.12 0.56 4.86 -2.91 -0.01 0.55 16 34 H 0.16 -0.57 8.06 -2.91 -0.02 -0.60 16 35 H 0.16 -0.85 6.30 -2.91 -0.02 -0.87 16 36 H 0.08 -0.56 7.66 -2.39 -0.02 -0.58 16 37 H 0.09 -0.64 7.66 -2.39 -0.02 -0.66 16 38 H 0.06 0.16 8.10 -2.39 -0.02 0.14 16 39 H 0.06 0.20 8.10 -2.39 -0.02 0.18 16 40 H 0.13 -1.83 8.14 -2.39 -0.02 -1.85 16 41 H 0.13 -1.99 8.14 -2.39 -0.02 -2.01 16 42 H 0.42 -7.14 8.47 -92.71 -0.79 -7.92 16 43 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.07 -0.42 7.84 -2.39 -0.02 -0.44 16 45 H 0.07 -0.27 8.14 -2.38 -0.02 -0.29 16 46 H 0.12 -1.31 8.10 -2.39 -0.02 -1.33 16 47 H 0.23 -3.74 6.74 -2.91 -0.02 -3.76 16 48 H 0.21 -1.27 8.06 -2.91 -0.02 -1.30 16 49 H 0.13 -1.95 7.90 -2.39 -0.02 -1.97 16 50 H 0.10 -1.71 6.98 -2.39 -0.02 -1.73 16 51 H 0.13 1.09 8.06 -2.91 -0.02 1.06 16 Total: 0.00 -38.74 420.26 0.13 -38.60 By element: Atomic # 1 Polarization: -31.38 SS G_CDS: -0.43 Total: -31.81 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 5.36 Total: 5.39 kcal Atomic # 7 Polarization: 2.43 SS G_CDS: -3.95 Total: -1.52 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -2.89 Total: -11.49 kcal Atomic # 14 Polarization: -1.21 SS G_CDS: 2.05 Total: 0.83 kcal Total: -38.74 0.13 -38.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.776 kcal (2) G-P(sol) polarization free energy of solvation -38.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds