Wall clock time and date at job start Sun Mar 7 2021 13:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33817 * 122.44998 * 2 1 4 4 C 1.50699 * 124.51925 * 359.97438 * 3 2 1 5 5 O 1.42904 * 109.46970 * 113.27936 * 4 3 2 6 6 Si 1.86304 * 109.47083 * 233.27652 * 4 3 2 7 7 S 1.70618 * 110.95474 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56347 * 359.97438 * 7 3 2 9 9 C 1.46577 * 125.45648 * 179.97438 * 8 7 3 10 10 O 1.21701 * 120.00001 * 180.02562 * 9 8 7 11 11 N 1.34785 * 120.00159 * 0.02894 * 9 8 7 12 12 C 1.46498 * 119.99921 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47069 * 179.97438 * 12 11 9 14 14 H 1.09000 * 112.84360 * 43.80808 * 13 12 11 15 15 C 1.53781 * 113.61544 * 175.00045 * 13 12 11 16 16 C 1.53786 * 87.07748 * 140.06943 * 15 13 12 17 17 H 1.09006 * 113.60730 * 219.93858 * 16 15 13 18 18 N 1.46493 * 113.61749 * 89.12100 * 16 15 13 19 19 C 1.35315 * 125.86421 * 274.99992 * 18 16 15 20 20 C 1.35358 * 106.17494 * 180.02562 * 19 18 16 21 21 N 1.33769 * 106.49203 * 359.97438 * 20 19 18 22 22 N 1.28626 * 108.89043 * 0.02562 * 21 20 19 23 23 C 1.53777 * 113.69176 * 272.54045 * 13 12 11 24 24 C 1.36648 * 109.08363 * 0.24487 * 8 7 3 25 25 H 1.09000 * 109.46552 * 84.85385 * 1 2 3 26 26 H 1.09004 * 109.46923 * 204.85204 * 1 2 3 27 27 H 1.08990 * 109.47237 * 324.85133 * 1 2 3 28 28 H 1.08995 * 109.47166 * 353.27865 * 4 3 2 29 29 H 0.96702 * 113.99910 * 59.99931 * 5 4 3 30 30 H 1.48499 * 109.99799 * 58.68184 * 6 4 3 31 31 H 1.48498 * 110.00245 * 180.02562 * 6 4 3 32 32 H 0.96994 * 119.99695 * 359.97438 * 11 9 8 33 33 H 1.09002 * 109.47012 * 60.00419 * 12 11 9 34 34 H 1.08995 * 109.47322 * 300.00240 * 12 11 9 35 35 H 1.09004 * 113.61208 * 25.52250 * 15 13 12 36 36 H 1.08998 * 113.61353 * 254.61706 * 15 13 12 37 37 H 1.07997 * 126.91575 * 0.02562 * 19 18 16 38 38 H 1.07996 * 126.75377 * 179.97438 * 20 19 18 39 39 H 1.09002 * 113.61561 * 105.46154 * 23 13 12 40 40 H 1.09002 * 113.61518 * 334.55553 * 23 13 12 41 41 H 1.07994 * 123.34885 * 179.75864 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6355 2.5161 -0.0006 5 8 1.9387 3.1631 1.2370 6 14 2.3596 3.4982 -1.4084 7 16 3.8970 0.7892 -0.0007 8 6 3.5937 -0.9428 -0.0002 9 6 4.6231 -1.9862 -0.0010 10 8 4.3002 -3.1596 -0.0011 11 7 5.9274 -1.6462 -0.0017 12 6 6.9562 -2.6892 -0.0019 13 6 8.3413 -2.0392 -0.0033 14 1 8.4169 -1.2028 0.6916 15 6 9.4954 -3.0482 0.1192 16 6 10.2495 -2.1911 -0.9113 17 1 10.8044 -2.7771 -1.6440 18 7 11.0524 -1.1229 -0.3111 19 6 10.6039 0.1049 0.0386 20 6 11.6698 0.7642 0.5498 21 7 12.7043 -0.0816 0.4892 22 7 12.3057 -1.1908 -0.0259 23 6 8.8731 -1.7209 -1.4106 24 6 2.2446 -1.1601 -0.0051 25 1 -0.3632 0.0922 -1.0236 26 1 -0.3633 -0.9325 0.4319 27 1 -0.3633 0.8402 0.5916 28 1 0.5542 2.4512 -0.1212 29 1 2.8854 3.2555 1.4109 30 1 2.0786 2.8190 -2.6987 31 1 1.7867 4.8681 -1.4196 32 1 6.1847 -0.7111 -0.0020 33 1 6.8452 -3.3088 -0.8918 34 1 6.8459 -3.3085 0.8882 35 1 9.2438 -4.0452 -0.2425 36 1 9.9629 -3.0593 1.1037 37 1 9.5979 0.4829 -0.0687 38 1 11.6825 1.7744 0.9316 39 1 8.8384 -0.6606 -1.6611 40 1 8.4515 -2.3551 -2.1905 41 1 1.8020 -2.1452 -0.0096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946166_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:29:13 Heat of formation + Delta-G solvation = 96.732387 kcal Electronic energy + Delta-G solvation = -25608.647900 eV Core-core repulsion = 21813.308574 eV Total energy + Delta-G solvation = -3795.339327 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.34030 -41.24473 -40.44185 -39.66451 -37.70313 -35.96982 -33.98854 -32.63942 -32.01862 -29.99672 -29.74822 -27.35954 -26.81407 -25.27705 -24.15418 -23.58882 -22.75173 -21.94354 -21.00855 -20.30731 -19.53046 -18.36270 -17.95532 -17.81929 -17.31249 -17.05799 -16.76372 -16.30439 -16.15322 -15.90922 -15.71652 -15.60403 -15.16643 -14.99940 -14.85775 -14.45867 -14.27064 -14.08880 -13.95785 -13.58804 -13.49790 -13.27273 -13.09483 -12.73612 -12.55041 -12.48420 -12.30055 -12.18020 -12.07483 -12.03363 -11.79242 -11.23749 -11.02260 -10.89028 -10.37102 -10.36991 -9.79871 -9.58230 -5.33114 -0.74997 0.18475 0.57340 0.58372 0.95504 1.17846 1.19846 1.47626 1.64167 1.77379 1.83361 2.06385 2.71304 2.88761 3.13396 3.16821 3.26403 3.40959 3.48828 3.58848 3.79900 3.87859 3.97308 4.03976 4.05181 4.11548 4.19737 4.23456 4.29230 4.30889 4.34305 4.43675 4.48625 4.54734 4.57080 4.70125 4.74398 4.80586 4.85332 5.12301 5.14497 5.18201 5.25579 5.57770 6.18084 6.25206 6.95748 7.55157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.097 4.097 3 C -0.230 4.230 4 C -0.035 4.035 5 O -0.532 6.532 6 Si 0.677 3.323 7 S 0.200 5.800 8 C -0.261 4.261 9 C 0.593 3.407 10 O -0.523 6.523 11 N -0.727 5.727 12 C 0.132 3.868 13 C -0.131 4.131 14 H 0.103 0.897 15 C -0.130 4.130 16 C 0.111 3.889 17 H 0.127 0.873 18 N -0.274 5.274 19 C -0.053 4.053 20 C -0.049 4.049 21 N -0.270 5.270 22 N -0.081 5.081 23 C -0.136 4.136 24 C -0.044 4.044 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.128 0.872 29 H 0.377 0.623 30 H -0.248 1.248 31 H -0.240 1.240 32 H 0.398 0.602 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.188 0.812 38 H 0.191 0.809 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.888 2.811 -1.876 3.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.110 4.110 3 C -0.349 4.349 4 C -0.147 4.147 5 O -0.337 6.337 6 Si 0.575 3.425 7 S 0.469 5.531 8 C -0.381 4.381 9 C 0.379 3.621 10 O -0.400 6.400 11 N -0.379 5.379 12 C 0.009 3.991 13 C -0.150 4.150 14 H 0.121 0.879 15 C -0.168 4.168 16 C 0.009 3.991 17 H 0.145 0.855 18 N -0.068 5.068 19 C -0.204 4.204 20 C -0.206 4.206 21 N -0.136 5.136 22 N -0.061 5.061 23 C -0.174 4.174 24 C -0.077 4.077 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.145 0.855 29 H 0.225 0.775 30 H -0.172 1.172 31 H -0.163 1.163 32 H 0.233 0.767 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.205 0.795 38 H 0.208 0.792 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.302 2.425 -2.610 3.576 hybrid contribution -2.740 -0.130 0.225 2.752 sum -3.041 2.295 -2.386 4.495 Atomic orbital electron populations 1.20630 0.89109 1.03670 1.02727 1.18708 0.98186 0.90917 1.03193 1.24452 0.98791 1.00807 1.10871 1.24663 1.03845 0.89806 0.96376 1.86585 1.29706 1.79406 1.37991 0.95186 0.90057 0.80321 0.76898 1.82544 1.03040 0.98635 1.68900 1.24467 0.97950 0.96674 1.18993 1.16904 0.81524 0.87402 0.76250 1.90879 1.81566 1.18159 1.49396 1.45800 1.05402 1.10280 1.76465 1.21385 0.84338 0.89945 1.03478 1.23022 0.94041 1.00036 0.97880 0.87878 1.23347 0.94413 0.98830 1.00253 1.22509 0.91714 0.87759 0.97163 0.85479 1.47184 1.08086 1.11315 1.40176 1.23592 1.02801 0.86962 1.07002 1.23692 0.89163 1.02189 1.05548 1.75181 1.26125 0.97413 1.14845 1.78387 0.93172 1.18768 1.15738 1.23551 0.92232 1.03911 0.97728 1.20716 0.90967 1.00079 0.95928 0.90802 0.90706 0.90892 0.85474 0.77525 1.17151 1.16315 0.76725 0.90350 0.90439 0.86696 0.89595 0.79464 0.79184 0.89488 0.86565 0.82576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.14 9.47 36.01 0.34 0.48 16 2 C -0.10 0.02 5.78 -106.45 -0.62 -0.60 16 3 C -0.23 0.27 4.83 -35.86 -0.17 0.10 16 4 C -0.03 0.06 2.77 36.01 0.10 0.16 16 5 O -0.53 0.62 12.88 -35.23 -0.45 0.16 16 6 Si 0.68 -1.58 32.13 -169.99 -5.46 -7.04 16 7 S 0.20 -0.62 20.82 -107.50 -2.24 -2.86 16 8 C -0.26 0.01 6.45 -36.80 -0.24 -0.23 16 9 C 0.59 0.56 7.78 -12.89 -0.10 0.46 16 10 O -0.52 -2.55 16.84 5.19 0.09 -2.46 16 11 N -0.73 1.94 5.55 -61.65 -0.34 1.60 16 12 C 0.13 -0.46 5.51 -4.04 -0.02 -0.48 16 13 C -0.13 0.71 3.33 -89.81 -0.30 0.41 16 14 H 0.10 -0.59 6.97 -51.93 -0.36 -0.95 16 15 C -0.13 0.58 7.44 -25.92 -0.19 0.39 16 16 C 0.11 -0.41 5.11 -67.12 -0.34 -0.75 16 17 H 0.13 -0.52 8.14 -51.93 -0.42 -0.94 16 18 N -0.27 0.12 3.52 -53.97 -0.19 -0.07 16 19 C -0.05 0.11 9.68 -17.04 -0.17 -0.06 16 20 C -0.05 -0.01 12.06 -17.73 -0.21 -0.22 16 21 N -0.27 -1.16 12.41 30.23 0.38 -0.79 16 22 N -0.08 -0.30 13.16 60.35 0.79 0.50 16 23 C -0.14 0.81 6.88 -25.92 -0.18 0.63 16 24 C -0.04 -0.02 9.78 -40.43 -0.40 -0.42 16 25 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 26 H 0.07 -0.14 8.10 -51.93 -0.42 -0.56 16 27 H 0.07 -0.11 7.00 -51.93 -0.36 -0.47 16 28 H 0.13 -0.18 6.25 -51.93 -0.32 -0.51 16 29 H 0.38 -1.90 8.70 45.56 0.40 -1.51 16 30 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 31 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 32 H 0.40 -2.06 7.59 -40.82 -0.31 -2.37 16 33 H 0.08 -0.24 7.85 -51.93 -0.41 -0.65 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 35 H 0.11 -0.66 8.10 -51.93 -0.42 -1.08 16 36 H 0.09 -0.24 8.14 -51.93 -0.42 -0.67 16 37 H 0.19 -1.16 6.74 -52.49 -0.35 -1.52 16 38 H 0.19 -0.54 8.06 -52.49 -0.42 -0.97 16 39 H 0.09 -0.56 6.98 -51.93 -0.36 -0.93 16 40 H 0.12 -0.77 7.90 -51.93 -0.41 -1.18 16 41 H 0.16 0.08 8.06 -52.49 -0.42 -0.35 16 LS Contribution 359.27 15.07 5.41 5.41 Total: 0.00 -11.28 359.27 -9.58 -20.86 By element: Atomic # 1 Polarization: -10.13 SS G_CDS: -5.07 Total: -15.20 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.50 Total: -0.13 kcal Atomic # 7 Polarization: 0.61 SS G_CDS: 0.64 Total: 1.24 kcal Atomic # 8 Polarization: -1.93 SS G_CDS: -0.37 Total: -2.30 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: -5.46 Total: -7.04 kcal Atomic # 16 Polarization: -0.62 SS G_CDS: -2.24 Total: -2.86 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -11.28 -9.58 -20.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946166_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.595 kcal (2) G-P(sol) polarization free energy of solvation -11.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds