Wall clock time and date at job start Sun Mar 7 2021 13:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86305 * 109.46979 * 2 1 4 4 C 1.50701 * 109.47202 * 240.00159 * 2 1 3 5 5 C 1.38232 * 119.97343 * 119.99823 * 4 2 1 6 6 C 1.38294 * 120.11124 * 180.02562 * 5 4 2 7 7 C 1.38122 * 120.05499 * 359.97438 * 6 5 4 8 8 C 1.38756 * 119.94212 * 0.28466 * 7 6 5 9 9 O 1.35904 * 120.05096 * 179.71799 * 8 7 6 10 10 C 1.42900 * 117.00131 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47009 * 180.02562 * 10 9 8 12 12 C 1.50695 * 109.47483 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99498 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00441 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00039 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.46935 * 180.02562 * 15 14 12 17 17 H 1.08992 * 112.84881 * 45.33181 * 16 15 14 18 18 C 1.53781 * 113.61053 * 176.53339 * 16 15 14 19 19 C 1.53779 * 87.08153 * 139.97915 * 18 16 15 20 20 H 1.08994 * 113.61383 * 220.01328 * 19 18 16 21 21 N 1.46504 * 113.61500 * 89.11188 * 19 18 16 22 22 C 1.36878 * 126.39852 * 120.00060 * 21 19 18 23 23 C 1.34672 * 106.82030 * 179.97438 * 22 21 19 24 24 N 1.34128 * 108.01790 * 0.02562 * 23 22 21 25 25 C 1.30496 * 109.25553 * 359.72031 * 24 23 22 26 26 C 1.53784 * 113.61284 * 274.13731 * 16 15 14 27 27 C 1.38173 * 119.96798 * 299.97865 * 4 2 1 28 28 H 0.96704 * 114.00011 * 300.00586 * 1 2 3 29 29 H 1.08997 * 109.47255 * 119.99837 * 2 1 3 30 30 H 1.48495 * 109.99753 * 178.68196 * 3 2 1 31 31 H 1.48505 * 109.99870 * 299.99830 * 3 2 1 32 32 H 1.08002 * 119.94710 * 0.02562 * 5 4 2 33 33 H 1.07999 * 119.97251 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.02504 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46950 * 300.00206 * 10 9 8 36 36 H 1.08994 * 109.46928 * 60.00366 * 10 9 8 37 37 H 1.09003 * 109.47053 * 300.00292 * 11 10 9 38 38 H 1.09002 * 109.47226 * 59.99701 * 11 10 9 39 39 H 0.96995 * 120.00018 * 0.02562 * 14 12 11 40 40 H 1.08998 * 109.47440 * 299.99792 * 15 14 12 41 41 H 1.08997 * 109.47421 * 60.00453 * 15 14 12 42 42 H 1.09009 * 113.60994 * 254.52565 * 18 16 15 43 43 H 1.08997 * 113.62058 * 25.34491 * 18 16 15 44 44 H 1.08007 * 126.59150 * 0.03799 * 22 21 19 45 45 H 1.08000 * 125.99141 * 180.02562 * 23 22 21 46 46 H 1.08004 * 125.65359 * 180.29322 * 25 24 23 47 47 H 1.09001 * 113.61374 * 334.56411 * 26 16 15 48 48 H 1.08996 * 113.61272 * 105.47106 * 26 16 15 49 49 H 1.07997 * 120.02623 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.7260 -0.0380 -2.1400 6 6 3.1882 -0.6870 -3.2704 7 6 2.8570 -2.0093 -3.4930 8 6 2.0550 -2.6848 -2.5842 9 8 1.7230 -3.9842 -2.8039 10 6 2.2343 -4.5926 -3.9915 11 6 1.7578 -6.0445 -4.0665 12 6 2.2975 -6.6864 -5.3186 13 8 2.9942 -6.0454 -6.0766 14 7 2.0059 -7.9726 -5.5961 15 6 2.5301 -8.5963 -6.8136 16 6 2.0537 -10.0484 -6.8885 17 1 0.9944 -10.1587 -6.6567 18 6 2.4812 -10.7712 -8.1768 19 6 2.7489 -12.0067 -7.3013 20 1 3.6494 -12.5533 -7.5811 21 7 1.5809 -12.8763 -7.1404 22 6 1.4901 -14.1911 -7.5101 23 6 0.2507 -14.6034 -7.1823 24 7 -0.3979 -13.5683 -6.6282 25 6 0.3946 -12.5321 -6.5947 26 6 2.9567 -11.0330 -6.1270 27 6 1.5975 -2.0334 -1.4483 28 1 -0.3933 0.4418 0.7650 29 1 1.7924 -0.5138 0.8900 30 1 3.5345 1.7703 0.0321 31 1 1.5615 2.4679 -1.2086 32 1 2.9865 0.9959 -1.9676 33 1 3.8092 -0.1596 -3.9794 34 1 3.2185 -2.5158 -4.3757 35 1 1.8739 -4.0468 -4.8635 36 1 3.3238 -4.5679 -3.9722 37 1 2.1179 -6.5906 -3.1946 38 1 0.6683 -6.0689 -4.0859 39 1 1.4484 -8.4851 -4.9900 40 1 2.1697 -8.0507 -7.6856 41 1 3.6197 -8.5716 -6.7944 42 1 1.6685 -10.9093 -8.8901 43 1 3.3791 -10.3552 -8.6336 44 1 2.2642 -14.7843 -7.9743 45 1 -0.1508 -15.5938 -7.3383 46 1 0.1427 -11.5595 -6.1983 47 1 3.9859 -10.6896 -6.0216 48 1 2.5276 -11.3822 -5.1878 49 1 0.9773 -2.5584 -0.7370 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4549614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:32:44 Heat of formation + Delta-G solvation = 20.362570 kcal Electronic energy + Delta-G solvation = -29839.453763 eV Core-core repulsion = 25542.856647 eV Total energy + Delta-G solvation = -4296.597117 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.22521 -41.49833 -40.92737 -39.87077 -39.10527 -37.34194 -35.80967 -33.62209 -33.12933 -32.70028 -31.07770 -30.31444 -29.04726 -27.06266 -26.86670 -25.57891 -24.26374 -23.83268 -22.43156 -22.07290 -21.78644 -21.40122 -20.76651 -19.23812 -18.40681 -18.03196 -17.78353 -17.58942 -17.48200 -17.38088 -16.92459 -16.54121 -16.13403 -15.97662 -15.86805 -15.64636 -15.35118 -14.96268 -14.82555 -14.66262 -14.64964 -14.51582 -14.35809 -14.17756 -13.99381 -13.57892 -13.48130 -13.46109 -13.14315 -12.98059 -12.85979 -12.41956 -12.17300 -12.02315 -11.90932 -11.82056 -11.77958 -11.62076 -11.08407 -10.92401 -10.53071 -10.43489 -10.18147 -9.98313 -9.49094 -9.42614 -4.94094 0.04919 0.21114 1.08129 1.27671 1.49033 1.64792 1.65134 1.78721 1.97958 2.18898 2.41977 2.49255 3.21702 3.34957 3.36544 3.51201 3.58130 3.65509 3.69693 3.71190 3.77559 3.81224 3.84054 3.96385 3.97891 4.13193 4.15042 4.22001 4.22764 4.30879 4.38592 4.48245 4.54256 4.56270 4.62936 4.65452 4.69237 4.70233 4.74853 4.78844 4.83554 4.89542 4.92974 5.08317 5.19208 5.20783 5.27304 5.32864 5.38529 5.52634 5.79788 6.20941 6.27572 6.41508 6.90095 7.11510 7.11940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.083 4.083 3 Si 0.783 3.217 4 C -0.052 4.052 5 C -0.181 4.181 6 C -0.076 4.076 7 C -0.211 4.211 8 C 0.124 3.876 9 O -0.319 6.319 10 C 0.071 3.929 11 C -0.133 4.133 12 C 0.519 3.481 13 O -0.585 6.585 14 N -0.714 5.714 15 C 0.132 3.868 16 C -0.121 4.121 17 H 0.106 0.894 18 C -0.130 4.130 19 C 0.098 3.902 20 H 0.130 0.870 21 N -0.439 5.439 22 C -0.047 4.047 23 C -0.063 4.063 24 N -0.541 5.541 25 C 0.173 3.827 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.405 0.595 29 H 0.098 0.902 30 H -0.287 1.287 31 H -0.298 1.298 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.143 0.857 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.418 0.582 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.119 0.881 44 H 0.201 0.799 45 H 0.175 0.825 46 H 0.223 0.777 47 H 0.117 0.883 48 H 0.080 0.920 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 -0.852 3.165 4.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.192 4.192 3 Si 0.689 3.311 4 C -0.052 4.052 5 C -0.199 4.199 6 C -0.094 4.094 7 C -0.229 4.229 8 C 0.079 3.921 9 O -0.233 6.233 10 C -0.004 4.004 11 C -0.173 4.173 12 C 0.307 3.693 13 O -0.466 6.466 14 N -0.366 5.366 15 C 0.008 3.992 16 C -0.140 4.140 17 H 0.124 0.876 18 C -0.169 4.169 19 C -0.005 4.005 20 H 0.148 0.852 21 N -0.121 5.121 22 C -0.181 4.181 23 C -0.210 4.210 24 N -0.260 5.260 25 C -0.109 4.109 26 C -0.167 4.167 27 C -0.154 4.154 28 H 0.256 0.744 29 H 0.116 0.884 30 H -0.214 1.214 31 H -0.226 1.226 32 H 0.138 0.862 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.255 0.745 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.138 0.862 44 H 0.218 0.782 45 H 0.192 0.808 46 H 0.239 0.761 47 H 0.136 0.864 48 H 0.099 0.901 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.148 -0.229 2.041 3.759 hybrid contribution 0.644 -0.778 -0.772 1.271 sum 3.793 -1.007 1.268 4.124 Atomic orbital electron populations 1.86446 1.17005 1.82469 1.51448 1.24909 0.86083 1.11301 0.96889 0.94413 0.77181 0.74910 0.84610 1.19533 0.96359 0.93397 0.95895 1.20980 1.02725 0.99668 0.96525 1.21160 0.97762 0.93934 0.96558 1.21531 1.03264 0.96586 1.01549 1.19129 0.94640 0.83735 0.94645 1.85962 1.71085 1.22459 1.43778 1.22491 0.99060 0.93465 0.85379 1.21441 1.04907 0.93730 0.97213 1.20555 0.79623 0.82204 0.86953 1.90745 1.40172 1.63840 1.51798 1.45838 1.53320 1.11663 1.25821 1.21342 0.99028 0.92020 0.86768 1.22980 1.00858 0.92422 0.97712 0.87616 1.23358 1.03729 0.93686 0.96115 1.22586 0.87108 0.91159 0.99651 0.85183 1.45447 1.12500 1.09906 1.44277 1.23181 1.01326 0.85607 1.07949 1.22655 0.93159 0.99607 1.05562 1.70277 1.33438 1.00899 1.21411 1.25404 0.82285 1.00788 1.02453 1.23501 1.02289 0.94071 0.96855 1.20368 1.03286 0.94299 0.97477 0.74380 0.88434 1.21427 1.22631 0.86157 0.83326 0.83918 0.91825 0.91471 0.85359 0.85637 0.74457 0.92212 0.91132 0.91132 0.86231 0.78247 0.80816 0.76095 0.86432 0.90087 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.52 12.74 -148.98 -1.90 -2.42 16 2 C -0.08 -0.07 2.81 71.24 0.20 0.13 16 3 Si 0.78 -0.97 29.79 68.60 2.04 1.07 16 4 C -0.05 -0.37 5.42 -19.88 -0.11 -0.47 16 5 C -0.18 -1.34 8.67 22.28 0.19 -1.15 16 6 C -0.08 -0.45 10.04 22.26 0.22 -0.22 16 7 C -0.21 -1.34 9.04 22.37 0.20 -1.14 16 8 C 0.12 0.96 6.69 22.51 0.15 1.11 16 9 O -0.32 -1.75 10.14 -92.47 -0.94 -2.69 16 10 C 0.07 0.13 4.03 71.98 0.29 0.42 16 11 C -0.13 0.59 6.07 29.85 0.18 0.77 16 12 C 0.52 -0.35 7.83 87.66 0.69 0.33 16 13 O -0.59 -5.05 15.98 -3.03 -0.05 -5.10 16 14 N -0.71 4.90 5.56 -463.07 -2.57 2.33 16 15 C 0.13 -0.87 5.50 86.38 0.47 -0.40 16 16 C -0.12 1.27 3.24 -10.26 -0.03 1.23 16 17 H 0.11 -1.16 5.65 -2.39 -0.01 -1.18 16 18 C -0.13 1.24 7.35 31.12 0.23 1.47 16 19 C 0.10 -0.86 4.88 45.58 0.22 -0.64 16 20 H 0.13 -1.49 8.14 -2.39 -0.02 -1.51 16 21 N -0.44 1.05 2.94 -503.49 -1.48 -0.43 16 22 C -0.05 0.01 11.58 83.09 0.96 0.98 16 23 C -0.06 -0.32 11.87 83.52 0.99 0.67 16 24 N -0.54 -4.64 11.25 -200.31 -2.25 -6.90 16 25 C 0.17 0.20 11.18 180.26 2.01 2.21 16 26 C -0.13 1.44 7.06 31.18 0.22 1.66 16 27 C -0.14 -1.06 9.55 22.37 0.21 -0.85 16 28 H 0.40 -4.10 8.74 -74.05 -0.65 -4.75 16 29 H 0.10 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H -0.29 -1.11 7.11 99.48 0.71 -0.41 16 31 H -0.30 -1.97 7.11 99.48 0.71 -1.26 16 32 H 0.12 0.73 4.87 -2.91 -0.01 0.72 16 33 H 0.15 0.15 8.06 -2.91 -0.02 0.13 16 34 H 0.14 0.53 6.30 -2.91 -0.02 0.51 16 35 H 0.06 0.22 7.62 -2.39 -0.02 0.20 16 36 H 0.07 0.18 7.62 -2.39 -0.02 0.17 16 37 H 0.13 -1.07 8.14 -2.39 -0.02 -1.09 16 38 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.42 -5.28 8.47 -92.71 -0.79 -6.07 16 40 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.07 -0.37 7.88 -2.39 -0.02 -0.39 16 42 H 0.07 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.12 -1.40 8.10 -2.39 -0.02 -1.42 16 44 H 0.20 -1.34 8.06 -2.91 -0.02 -1.36 16 45 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.22 -1.20 5.87 -2.91 -0.02 -1.22 16 47 H 0.12 -1.48 7.92 -2.39 -0.02 -1.50 16 48 H 0.08 -0.80 8.01 -2.39 -0.02 -0.82 16 49 H 0.14 0.85 8.06 -2.91 -0.02 0.83 16 Total: 0.00 -29.84 403.38 -0.24 -30.08 By element: Atomic # 1 Polarization: -21.66 SS G_CDS: -0.40 Total: -22.07 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 7.31 Total: 6.12 kcal Atomic # 7 Polarization: 1.31 SS G_CDS: -6.31 Total: -5.00 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -2.88 Total: -10.21 kcal Atomic # 14 Polarization: -0.97 SS G_CDS: 2.04 Total: 1.07 kcal Total: -29.84 -0.24 -30.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4549614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.444 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds