Wall clock time and date at job start Sun Mar 7 2021 13:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86297 * 109.47358 * 2 1 4 4 C 1.50697 * 109.46656 * 120.00539 * 2 1 3 5 5 C 1.38247 * 119.96926 * 245.01644 * 4 2 1 6 6 C 1.38289 * 120.11477 * 179.97438 * 5 4 2 7 7 C 1.38120 * 120.05217 * 359.76455 * 6 5 4 8 8 C 1.38754 * 119.94319 * 0.50923 * 7 6 5 9 9 O 1.35909 * 120.05304 * 179.74010 * 8 7 6 10 10 C 1.42895 * 116.99961 * 359.73289 * 9 8 7 11 11 C 1.52997 * 109.46920 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 O 1.21282 * 120.00025 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00035 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99735 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46883 * 179.97438 * 16 15 13 18 18 H 1.08997 * 112.85098 * 45.32634 * 17 16 15 19 19 C 1.53774 * 113.61380 * 176.52701 * 17 16 15 20 20 C 1.53783 * 87.07931 * 139.97850 * 19 17 16 21 21 H 1.09001 * 113.61468 * 219.93044 * 20 19 17 22 22 N 1.46497 * 113.61303 * 89.11783 * 20 19 17 23 23 C 1.36882 * 126.39952 * 120.00233 * 22 20 19 24 24 C 1.34671 * 106.81961 * 180.02562 * 23 22 20 25 25 N 1.34122 * 108.01847 * 359.97438 * 24 23 22 26 26 C 1.30496 * 109.25964 * 359.73209 * 25 24 23 27 27 C 1.53785 * 113.61139 * 274.13496 * 17 16 15 28 28 C 1.38162 * 119.97853 * 64.99309 * 4 2 1 29 29 H 0.96710 * 113.99760 * 59.99886 * 1 2 3 30 30 H 1.09007 * 109.46856 * 239.99498 * 2 1 3 31 31 H 1.48493 * 109.99947 * 298.68051 * 3 2 1 32 32 H 1.48499 * 109.99813 * 60.00128 * 3 2 1 33 33 H 1.08007 * 119.94038 * 359.97438 * 5 4 2 34 34 H 1.08004 * 119.97195 * 180.02562 * 6 5 4 35 35 H 1.08000 * 120.02805 * 180.27865 * 7 6 5 36 36 H 1.08996 * 109.47554 * 59.99926 * 10 9 8 37 37 H 1.09001 * 109.47106 * 299.99370 * 10 9 8 38 38 H 1.09001 * 109.47502 * 60.00157 * 11 10 9 39 39 H 1.09001 * 109.47289 * 299.99954 * 11 10 9 40 40 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 41 41 H 1.08993 * 109.46955 * 60.00011 * 12 11 10 42 42 H 0.96998 * 119.99962 * 359.97438 * 15 13 12 43 43 H 1.08998 * 109.47135 * 299.99021 * 16 15 13 44 44 H 1.08993 * 109.47378 * 60.00104 * 16 15 13 45 45 H 1.09003 * 113.61426 * 254.52509 * 19 17 16 46 46 H 1.08995 * 113.61584 * 25.43536 * 19 17 16 47 47 H 1.08003 * 126.59337 * 359.96059 * 23 22 20 48 48 H 1.07998 * 125.99208 * 180.02562 * 24 23 22 49 49 H 1.08004 * 125.65872 * 180.28753 * 26 25 24 50 50 H 1.08996 * 113.61425 * 334.56598 * 27 17 16 51 51 H 1.08998 * 113.61309 * 105.46973 * 27 17 16 52 52 H 1.07997 * 120.02750 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7105 1.2304 5 6 2.6383 -0.0118 2.1911 6 6 3.1001 -0.6607 3.3217 7 6 2.8516 -2.0081 3.4958 8 6 2.1471 -2.7129 2.5303 9 8 1.9059 -4.0400 2.6970 10 6 2.4119 -4.6469 3.8876 11 6 2.0444 -6.1320 3.8989 12 6 2.5856 -6.7817 5.1740 13 6 2.2241 -8.2446 5.1849 14 8 1.5951 -8.7207 4.2637 15 7 2.5990 -9.0238 6.2187 16 6 2.2470 -10.4459 6.2294 17 6 2.7884 -11.0956 7.5045 18 1 2.5960 -10.5007 8.3973 19 6 2.3992 -12.5756 7.6548 20 6 3.8232 -12.8151 8.1836 21 1 4.2723 -13.7412 7.8248 22 7 3.9465 -12.6478 9.6338 23 6 4.3499 -13.6005 10.5300 24 6 4.3189 -13.0275 11.7483 25 7 3.9082 -11.7593 11.6000 26 6 3.6891 -11.5230 10.3355 27 6 4.2462 -11.5701 7.3829 28 6 1.6843 -2.0596 1.3977 29 1 -0.3933 0.4418 -0.7651 30 1 1.7923 -0.5139 -0.8900 31 1 1.5880 2.4585 -1.2242 32 1 1.5616 2.4678 1.2085 33 1 2.8303 1.0428 2.0585 34 1 3.6519 -0.1124 4.0710 35 1 3.2085 -2.5135 4.3810 36 1 1.9751 -4.1582 4.7585 37 1 3.4963 -4.5404 3.9170 38 1 2.4809 -6.6211 3.0280 39 1 0.9599 -6.2382 3.8696 40 1 3.6701 -6.6756 5.2037 41 1 2.1487 -6.2926 6.0446 42 1 3.1018 -8.6430 6.9556 43 1 1.1627 -10.5520 6.1995 44 1 2.6843 -10.9350 5.3591 45 1 1.6220 -12.7493 8.3991 46 1 2.1966 -13.0724 6.7060 47 1 4.6369 -14.6168 10.3037 48 1 4.5798 -13.5051 12.6812 49 1 3.3544 -10.5843 9.9192 50 1 4.5494 -11.7914 6.3596 51 1 4.9579 -10.9331 7.9080 52 1 1.1320 -2.6051 0.6469 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:32:48 Heat of formation + Delta-G solvation = 13.780461 kcal Electronic energy + Delta-G solvation = -31370.279162 eV Core-core repulsion = 26917.859005 eV Total energy + Delta-G solvation = -4452.420157 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.21375 -41.28111 -40.90718 -39.83426 -39.11536 -37.48221 -35.76560 -34.89169 -33.29390 -32.59134 -31.29781 -30.33285 -29.57003 -27.77570 -26.86619 -26.74891 -24.74510 -23.67686 -23.24612 -22.41690 -21.76956 -21.73895 -21.35252 -20.73226 -18.94148 -18.59479 -18.16678 -17.74649 -17.47541 -17.32266 -17.10742 -16.97991 -16.63774 -16.18329 -15.94462 -15.84273 -15.71522 -15.57491 -15.00685 -14.95898 -14.74958 -14.54455 -14.49912 -14.22056 -14.20037 -13.89451 -13.60522 -13.51097 -13.47250 -13.29299 -13.24211 -13.01965 -12.67884 -12.39542 -12.21173 -12.00556 -11.92654 -11.75535 -11.65643 -11.60624 -11.58100 -10.98009 -10.88249 -10.55075 -10.51878 -10.11166 -9.91034 -9.47967 -9.24087 -4.92117 0.21491 0.41269 1.09320 1.27846 1.61075 1.62511 1.79756 1.91472 1.97747 2.20050 2.38952 2.64204 3.22993 3.36127 3.38672 3.59228 3.64834 3.69717 3.72710 3.77565 3.85986 3.89246 3.97580 4.00292 4.12305 4.17571 4.23480 4.24523 4.27129 4.35583 4.36976 4.42192 4.49662 4.53049 4.58035 4.64853 4.66659 4.69809 4.70320 4.78065 4.80164 4.91333 4.94126 4.98735 5.02193 5.16380 5.23529 5.28248 5.34640 5.38578 5.45777 5.47473 5.74088 5.80816 6.28748 6.43306 6.53092 6.55715 7.13010 7.25167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.779 3.221 4 C -0.048 4.048 5 C -0.164 4.164 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.117 3.883 9 O -0.338 6.338 10 C 0.057 3.943 11 C -0.102 4.102 12 C -0.128 4.128 13 C 0.507 3.493 14 O -0.591 6.591 15 N -0.718 5.718 16 C 0.131 3.869 17 C -0.120 4.120 18 H 0.107 0.893 19 C -0.132 4.132 20 C 0.098 3.902 21 H 0.130 0.870 22 N -0.439 5.439 23 C -0.048 4.048 24 C -0.063 4.063 25 N -0.541 5.541 26 C 0.174 3.826 27 C -0.128 4.128 28 C -0.153 4.153 29 H 0.395 0.605 30 H 0.091 0.909 31 H -0.286 1.286 32 H -0.294 1.294 33 H 0.144 0.856 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.418 0.582 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.118 0.882 47 H 0.200 0.800 48 H 0.174 0.826 49 H 0.224 0.776 50 H 0.116 0.884 51 H 0.082 0.918 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -0.194 0.298 7.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.683 3.317 4 C -0.048 4.048 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.018 4.018 11 C -0.140 4.140 12 C -0.168 4.168 13 C 0.295 3.705 14 O -0.472 6.472 15 N -0.370 5.370 16 C 0.008 3.992 17 C -0.138 4.138 18 H 0.125 0.875 19 C -0.170 4.170 20 C -0.005 4.005 21 H 0.147 0.853 22 N -0.121 5.121 23 C -0.181 4.181 24 C -0.209 4.209 25 N -0.260 5.260 26 C -0.108 4.108 27 C -0.166 4.166 28 C -0.171 4.171 29 H 0.245 0.755 30 H 0.109 0.891 31 H -0.213 1.213 32 H -0.222 1.222 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.255 0.745 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.136 0.864 47 H 0.217 0.783 48 H 0.192 0.808 49 H 0.240 0.760 50 H 0.134 0.866 51 H 0.101 0.899 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.271 0.346 0.569 6.306 hybrid contribution -1.250 -0.868 -0.734 1.690 sum 5.020 -0.522 -0.165 5.050 Atomic orbital electron populations 1.86559 1.18624 1.80855 1.50986 1.25208 0.84084 1.12721 0.98302 0.93940 0.90140 0.71162 0.76457 1.19264 0.97204 0.92639 0.95690 1.21181 1.01524 1.00522 0.94904 1.21291 0.97053 0.93673 0.97024 1.21608 1.03918 0.96234 1.00619 1.19169 0.95665 0.83105 0.94922 1.86049 1.74952 1.20257 1.44009 1.23012 1.00076 0.92973 0.85701 1.21154 1.01822 0.92542 0.98471 1.21537 1.05378 0.90105 0.99748 1.21147 0.78087 0.89901 0.81328 1.90743 1.41989 1.76658 1.37787 1.45900 1.57692 1.09857 1.23583 1.21288 0.99774 0.80573 0.97604 1.22969 0.96567 0.96459 0.97834 0.87533 1.23364 0.95316 0.95432 1.02935 1.22582 0.99405 1.02389 0.76086 0.85253 1.45447 1.48407 1.10485 1.07803 1.23178 1.08002 0.97425 0.89523 1.22645 1.07729 0.91708 0.98837 1.70273 1.19495 1.17997 1.18265 1.25411 1.04703 0.93734 0.86989 1.23487 0.96282 0.95104 1.01723 1.20338 1.04161 0.94574 0.98063 0.75478 0.89109 1.21296 1.22186 0.83922 0.82205 0.82640 0.90106 0.89529 0.91989 0.92427 0.85272 0.85628 0.74502 0.92659 0.91548 0.91156 0.86417 0.78307 0.80828 0.76027 0.86554 0.89914 0.86442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.91 12.81 -148.98 -1.91 -4.82 16 2 C -0.10 -0.19 2.79 71.24 0.20 0.01 16 3 Si 0.78 -1.04 29.85 68.60 2.05 1.01 16 4 C -0.05 -0.25 5.38 -19.88 -0.11 -0.35 16 5 C -0.16 -0.28 8.67 22.28 0.19 -0.08 16 6 C -0.07 0.05 10.04 22.25 0.22 0.28 16 7 C -0.21 -0.12 9.04 22.37 0.20 0.08 16 8 C 0.12 0.71 6.69 22.51 0.15 0.87 16 9 O -0.34 -2.24 10.14 -92.52 -0.94 -3.17 16 10 C 0.06 -0.13 4.74 71.98 0.34 0.21 16 11 C -0.10 0.03 4.87 30.60 0.15 0.18 16 12 C -0.13 0.96 5.70 29.85 0.17 1.13 16 13 C 0.51 -0.24 7.83 87.66 0.69 0.44 16 14 O -0.59 -6.37 15.98 -3.04 -0.05 -6.42 16 15 N -0.72 4.93 5.56 -463.05 -2.57 2.36 16 16 C 0.13 -0.77 5.50 86.38 0.48 -0.29 16 17 C -0.12 1.23 3.24 -10.27 -0.03 1.20 16 18 H 0.11 -1.19 5.65 -2.39 -0.01 -1.20 16 19 C -0.13 1.20 7.35 31.12 0.23 1.43 16 20 C 0.10 -0.86 4.88 45.58 0.22 -0.64 16 21 H 0.13 -1.46 8.14 -2.39 -0.02 -1.48 16 22 N -0.44 1.13 2.94 -503.50 -1.48 -0.35 16 23 C -0.05 0.02 11.58 83.09 0.96 0.99 16 24 C -0.06 -0.30 11.87 83.52 0.99 0.69 16 25 N -0.54 -4.41 11.25 -200.31 -2.25 -6.66 16 26 C 0.17 0.13 11.18 180.26 2.01 2.14 16 27 C -0.13 1.43 7.06 31.18 0.22 1.65 16 28 C -0.15 -1.24 9.62 22.36 0.22 -1.02 16 29 H 0.39 -1.32 8.74 -74.05 -0.65 -1.97 16 30 H 0.09 -0.12 7.96 -2.38 -0.02 -0.14 16 31 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 32 H -0.29 -1.52 7.05 99.48 0.70 -0.82 16 33 H 0.14 -0.31 4.86 -2.91 -0.01 -0.33 16 34 H 0.16 -1.13 8.06 -2.91 -0.02 -1.15 16 35 H 0.16 -0.86 6.30 -2.91 -0.02 -0.88 16 36 H 0.08 -0.46 7.65 -2.39 -0.02 -0.48 16 37 H 0.09 -0.58 7.67 -2.39 -0.02 -0.60 16 38 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 39 H 0.06 0.27 8.10 -2.39 -0.02 0.25 16 40 H 0.13 -1.71 8.14 -2.39 -0.02 -1.73 16 41 H 0.13 -1.57 8.14 -2.39 -0.02 -1.59 16 42 H 0.42 -5.61 8.47 -92.71 -0.79 -6.39 16 43 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.07 -0.27 7.87 -2.39 -0.02 -0.29 16 45 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16 47 H 0.20 -1.35 8.06 -2.91 -0.02 -1.37 16 48 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 49 H 0.22 -1.34 5.87 -2.91 -0.02 -1.35 16 50 H 0.12 -1.44 7.92 -2.39 -0.02 -1.46 16 51 H 0.08 -0.86 8.01 -2.39 -0.02 -0.87 16 52 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 Total: 0.00 -33.15 424.94 -0.10 -33.26 By element: Atomic # 1 Polarization: -23.66 SS G_CDS: -0.45 Total: -24.11 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.50 Total: 8.92 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -6.31 Total: -4.65 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -2.89 Total: -14.42 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: 2.05 Total: 1.01 kcal Total: -33.15 -0.10 -33.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.036 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds