Wall clock time and date at job start Sun Mar 7 2021 13:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86300 * 109.47190 * 2 1 4 4 C 1.50697 * 109.47590 * 239.99812 * 2 1 3 5 5 C 1.38271 * 119.94391 * 119.72423 * 4 2 1 6 6 C 1.38148 * 120.05274 * 179.72564 * 5 4 2 7 7 C 1.38729 * 119.94266 * 0.55306 * 6 5 4 8 8 O 1.35899 * 120.05388 * 179.74526 * 7 6 5 9 9 C 1.42900 * 116.99982 * 359.97438 * 8 7 6 10 10 C 1.50705 * 109.47259 * 179.97438 * 9 8 7 11 11 C 1.36424 * 125.79901 * 90.00142 * 10 9 8 12 12 C 1.47376 * 127.19399 * 359.95389 * 11 10 9 13 13 O 1.21614 * 119.99863 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00281 * 180.02562 * 12 11 10 15 15 C 1.46498 * 119.99954 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46966 * 180.02562 * 15 14 12 17 17 H 1.08999 * 112.84781 * 43.80260 * 16 15 14 18 18 C 1.53783 * 113.61551 * 175.00074 * 16 15 14 19 19 C 1.53784 * 87.08011 * 139.98461 * 18 16 15 20 20 H 1.09007 * 113.60784 * 220.02080 * 19 18 16 21 21 N 1.46493 * 113.61726 * 89.11881 * 19 18 16 22 22 C 1.36882 * 126.39898 * 119.71226 * 21 19 18 23 23 C 1.34665 * 106.81387 * 179.84054 * 22 21 19 24 24 N 1.34129 * 108.02622 * 0.42024 * 23 22 21 25 25 C 1.30496 * 109.25239 * 359.73561 * 24 23 22 26 26 C 1.53772 * 113.61458 * 272.49877 * 16 15 14 27 27 C 1.47021 * 105.61514 * 179.97438 * 11 10 9 28 28 C 1.34186 * 105.95356 * 359.97438 * 27 11 10 29 29 O 1.33647 * 125.80251 * 269.69479 * 10 9 8 30 30 C 1.38729 * 119.89317 * 359.72131 * 7 6 5 31 31 C 1.38146 * 119.94031 * 0.02562 * 30 7 6 32 32 H 0.96695 * 114.00385 * 300.00492 * 1 2 3 33 33 H 1.09001 * 109.47255 * 120.00067 * 2 1 3 34 34 H 1.48506 * 110.00048 * 300.00131 * 3 2 1 35 35 H 1.48502 * 109.99996 * 61.31456 * 3 2 1 36 36 H 1.07996 * 119.97091 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.02469 * 180.27427 * 6 5 4 38 38 H 1.09003 * 109.47540 * 299.99916 * 9 8 7 39 39 H 1.08997 * 109.47340 * 59.99904 * 9 8 7 40 40 H 0.96994 * 119.99776 * 0.02562 * 14 12 11 41 41 H 1.09001 * 109.47110 * 300.00003 * 15 14 12 42 42 H 1.08995 * 109.47430 * 60.00207 * 15 14 12 43 43 H 1.09002 * 113.60815 * 254.53040 * 18 16 15 44 44 H 1.08998 * 113.61310 * 25.34352 * 18 16 15 45 45 H 1.08000 * 126.58908 * 359.97438 * 22 21 19 46 46 H 1.08004 * 125.98631 * 180.11738 * 23 22 21 47 47 H 1.08001 * 125.65104 * 180.02562 * 25 24 23 48 48 H 1.09002 * 113.61673 * 334.56641 * 26 16 15 49 49 H 1.09004 * 113.61872 * 105.46681 * 26 16 15 50 50 H 1.07995 * 127.02106 * 180.02562 * 27 11 10 51 51 H 1.08000 * 125.43658 * 180.02562 * 28 27 11 52 52 H 1.07994 * 120.03032 * 179.97438 * 30 7 6 53 53 H 1.08000 * 119.97141 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1881 -0.6863 -3.2684 7 6 2.8536 -2.0145 -3.4891 8 8 3.3070 -2.6553 -4.5984 9 6 4.1235 -1.9000 -5.4957 10 6 4.5294 -2.7692 -6.6580 11 6 3.8410 -2.9108 -7.8273 12 6 2.5738 -2.2571 -8.1998 13 8 2.0311 -1.4953 -7.4226 14 7 2.0163 -2.5035 -9.4019 15 6 0.7569 -1.8532 -9.7724 16 6 0.3451 -2.3016 -11.1761 17 1 0.4682 -3.3735 -11.3311 18 6 -1.0297 -1.7697 -11.6141 19 6 -0.4135 -1.5495 -13.0058 20 1 -0.7325 -0.6228 -13.4829 21 7 -0.5261 -2.7134 -13.8883 22 6 -1.1722 -2.7589 -15.0941 23 6 -1.0276 -4.0116 -15.5665 24 7 -0.3205 -4.7145 -14.6693 25 6 -0.0167 -3.9433 -13.6614 26 6 0.9481 -1.4416 -12.2991 27 6 4.6272 -3.8523 -8.6379 28 6 5.6935 -4.1799 -7.8921 29 8 5.6279 -3.5278 -6.7208 30 6 2.0560 -2.6877 -2.5752 31 6 1.5963 -2.0340 -1.4483 32 1 -0.3934 0.4417 0.7649 33 1 1.7923 -0.5138 0.8900 34 1 1.5614 2.4679 -1.2085 35 1 1.5878 2.4586 1.2242 36 1 2.9776 0.9997 -1.9728 37 1 3.8089 -0.1602 -3.9784 38 1 3.5616 -1.0411 -5.8628 39 1 5.0148 -1.5543 -4.9724 40 1 2.4489 -3.1114 -10.0216 41 1 -0.0194 -2.1322 -9.0598 42 1 0.8893 -0.7714 -9.7604 43 1 -1.8152 -2.5253 -11.5990 44 1 -1.3207 -0.8466 -11.1128 45 1 -1.6955 -1.9458 -15.5752 46 1 -1.4172 -4.3862 -16.5016 47 1 0.5489 -4.2395 -12.7903 48 1 1.1985 -0.4279 -11.9863 49 1 1.7594 -1.9321 -12.8371 50 1 4.3945 -4.2070 -9.6310 51 1 6.4809 -4.8571 -8.1886 52 1 1.7939 -3.7215 -2.7450 53 1 0.9750 -2.5574 -0.7367 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4549634.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:33:02 Heat of formation + Delta-G solvation = 49.310313 kcal Electronic energy + Delta-G solvation = -37416.332982 eV Core-core repulsion = 32417.630520 eV Total energy + Delta-G solvation = -4998.702462 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.172 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.71483 -43.22326 -41.29243 -40.79972 -39.76585 -39.16914 -37.39712 -35.84287 -34.17044 -33.26812 -32.87384 -32.00226 -31.48866 -30.33399 -29.35756 -27.73139 -26.86849 -26.15455 -25.22311 -24.03617 -23.76132 -22.42838 -22.32684 -22.05078 -21.79601 -21.12895 -20.64167 -19.50390 -19.15639 -18.54971 -17.80728 -17.62511 -17.27433 -17.24339 -16.95992 -16.78709 -16.66424 -16.52416 -16.11005 -15.96710 -15.80428 -15.72618 -15.49931 -15.24848 -14.89748 -14.73419 -14.60019 -14.51415 -14.34381 -14.21982 -14.09690 -13.86824 -13.83541 -13.58073 -13.48000 -13.40832 -13.16545 -13.09093 -12.53307 -12.16814 -12.03494 -11.95375 -11.77325 -11.76922 -11.62471 -11.15865 -10.97304 -10.92823 -10.52811 -10.49286 -10.20914 -10.06426 -9.82536 -9.48634 -9.23885 -4.93847 -0.04023 0.24752 0.28411 1.03453 1.08484 1.30473 1.51537 1.59267 1.78915 1.94754 2.04292 2.12192 2.19336 2.46538 2.59598 3.21464 3.33423 3.34172 3.40857 3.56256 3.62071 3.65651 3.69317 3.71208 3.76103 3.80379 3.92835 3.95483 3.96694 4.10713 4.20951 4.22788 4.27115 4.40463 4.43828 4.45927 4.46850 4.56592 4.59713 4.65342 4.66186 4.68960 4.75104 4.79125 4.80848 4.88919 4.92550 4.93707 5.13223 5.18843 5.22979 5.26540 5.33005 5.37649 5.46937 5.66462 5.80288 5.88680 6.24498 6.27703 6.41406 6.60308 7.08639 7.12198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.762 3.238 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.204 4.204 7 C 0.124 3.876 8 O -0.322 6.322 9 C 0.134 3.866 10 C 0.040 3.960 11 C -0.224 4.224 12 C 0.582 3.418 13 O -0.574 6.574 14 N -0.706 5.706 15 C 0.134 3.866 16 C -0.122 4.122 17 H 0.106 0.894 18 C -0.130 4.130 19 C 0.100 3.900 20 H 0.132 0.868 21 N -0.439 5.439 22 C -0.047 4.047 23 C -0.063 4.063 24 N -0.540 5.540 25 C 0.172 3.828 26 C -0.129 4.129 27 C -0.197 4.197 28 C -0.012 4.012 29 O -0.177 6.177 30 C -0.163 4.163 31 C -0.059 4.059 32 H 0.394 0.606 33 H 0.097 0.903 34 H -0.301 1.301 35 H -0.284 1.284 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.415 0.585 41 H 0.058 0.942 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.201 0.799 46 H 0.175 0.825 47 H 0.222 0.778 48 H 0.118 0.882 49 H 0.081 0.919 50 H 0.192 0.808 51 H 0.252 0.748 52 H 0.135 0.865 53 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 3.133 -1.031 5.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.189 4.189 3 Si 0.667 3.333 4 C -0.124 4.124 5 C -0.095 4.095 6 C -0.222 4.222 7 C 0.079 3.921 8 O -0.236 6.236 9 C 0.060 3.940 10 C -0.013 4.013 11 C -0.229 4.229 12 C 0.370 3.630 13 O -0.455 6.455 14 N -0.358 5.358 15 C 0.010 3.990 16 C -0.140 4.140 17 H 0.123 0.877 18 C -0.169 4.169 19 C -0.003 4.003 20 H 0.149 0.851 21 N -0.121 5.121 22 C -0.180 4.180 23 C -0.210 4.210 24 N -0.259 5.259 25 C -0.110 4.110 26 C -0.166 4.166 27 C -0.216 4.216 28 C -0.078 4.078 29 O -0.072 6.072 30 C -0.181 4.181 31 C -0.077 4.077 32 H 0.245 0.755 33 H 0.115 0.885 34 H -0.229 1.229 35 H -0.211 1.211 36 H 0.165 0.835 37 H 0.168 0.832 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.138 0.862 45 H 0.218 0.782 46 H 0.192 0.808 47 H 0.238 0.762 48 H 0.136 0.864 49 H 0.100 0.900 50 H 0.209 0.791 51 H 0.267 0.733 52 H 0.153 0.847 53 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.636 3.265 -0.892 5.740 hybrid contribution -1.462 0.235 -0.055 1.482 sum 3.175 3.500 -0.946 4.819 Atomic orbital electron populations 1.86550 1.18736 1.80649 1.51050 1.24957 0.83884 1.11720 0.98380 0.94251 0.90377 0.72241 0.76386 1.19442 1.00941 0.94724 0.97302 1.20973 0.96185 0.99779 0.92602 1.21391 1.06137 0.93777 1.00937 1.19151 0.94721 0.91865 0.86363 1.86046 1.65314 1.40568 1.31703 1.21157 0.95475 0.91214 0.86182 1.22050 0.87037 0.96068 0.96110 1.21394 0.98573 1.05813 0.97143 1.17432 0.83325 0.80391 0.81840 1.90790 1.64325 1.38547 1.51820 1.45640 1.25153 1.48238 1.16756 1.21376 0.84643 0.97671 0.95269 1.22985 0.97226 1.00987 0.92805 0.87653 1.23368 0.96206 1.03543 0.93783 1.22530 0.99826 0.87477 0.90499 0.85050 1.45439 1.39724 1.10618 1.16307 1.23182 1.04628 1.01350 0.88866 1.22656 1.04591 0.92167 1.01554 1.70278 1.17578 1.34184 1.03873 1.25390 1.03296 0.81322 1.00970 1.23471 0.95283 1.02574 0.95300 1.23247 0.95346 1.00186 1.02773 1.24914 1.02127 0.98397 0.82343 1.83794 1.38524 1.46935 1.37965 1.20624 1.01183 1.01496 0.94841 1.20948 0.96725 0.93988 0.96031 0.75530 0.88535 1.22925 1.21079 0.83478 0.83196 0.87601 0.87870 0.74816 0.92351 0.90846 0.91115 0.86232 0.78230 0.80782 0.76205 0.86373 0.90033 0.79123 0.73259 0.84748 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.26 12.74 -148.98 -1.90 -4.16 16 2 C -0.08 -0.09 2.81 71.23 0.20 0.11 16 3 Si 0.76 -0.55 29.78 68.60 2.04 1.49 16 4 C -0.12 -0.63 5.42 -19.85 -0.11 -0.74 16 5 C -0.08 -0.30 8.66 22.26 0.19 -0.11 16 6 C -0.20 -1.02 9.04 22.37 0.20 -0.81 16 7 C 0.12 1.06 6.69 22.50 0.15 1.21 16 8 O -0.32 -3.16 10.12 -92.41 -0.94 -4.10 16 9 C 0.13 0.67 4.74 71.24 0.34 1.01 16 10 C 0.04 0.20 7.00 25.26 0.18 0.38 16 11 C -0.22 -0.73 6.31 -18.99 -0.12 -0.85 16 12 C 0.58 3.06 7.81 86.65 0.68 3.74 16 13 O -0.57 -7.34 14.85 -4.07 -0.06 -7.40 16 14 N -0.71 1.84 5.55 -466.42 -2.59 -0.75 16 15 C 0.13 -0.53 5.51 86.38 0.48 -0.06 16 16 C -0.12 1.08 3.25 -10.27 -0.03 1.04 16 17 H 0.11 -0.99 5.64 -2.39 -0.01 -1.01 16 18 C -0.13 1.09 7.35 31.12 0.23 1.32 16 19 C 0.10 -0.81 4.88 45.52 0.22 -0.59 16 20 H 0.13 -1.44 8.14 -2.38 -0.02 -1.46 16 21 N -0.44 0.85 2.94 -503.80 -1.48 -0.63 16 22 C -0.05 0.00 11.58 83.09 0.96 0.96 16 23 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 24 N -0.54 -4.74 11.25 -200.31 -2.25 -7.00 16 25 C 0.17 0.28 11.19 180.26 2.02 2.29 16 26 C -0.13 1.30 7.05 31.12 0.22 1.52 16 27 C -0.20 0.80 10.60 23.65 0.25 1.05 16 28 C -0.01 0.06 12.03 66.89 0.80 0.86 16 29 O -0.18 -0.41 10.52 4.46 0.05 -0.37 16 30 C -0.16 -1.29 9.99 22.37 0.22 -1.07 16 31 C -0.06 -0.37 9.60 22.25 0.21 -0.15 16 32 H 0.39 -1.71 8.74 -74.06 -0.65 -2.36 16 33 H 0.10 -0.31 7.96 -2.39 -0.02 -0.33 16 34 H -0.30 -2.10 7.11 99.48 0.71 -1.40 16 35 H -0.28 -0.82 7.11 99.48 0.71 -0.12 16 36 H 0.15 -0.13 4.87 -2.91 -0.01 -0.15 16 37 H 0.15 0.05 6.30 -2.91 -0.02 0.03 16 38 H 0.11 0.66 6.01 -2.39 -0.01 0.65 16 39 H 0.10 -0.02 7.66 -2.39 -0.02 -0.04 16 40 H 0.41 -3.46 7.64 -92.71 -0.71 -4.16 16 41 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.07 -0.24 7.84 -2.39 -0.02 -0.25 16 43 H 0.07 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 45 H 0.20 -1.29 8.06 -2.91 -0.02 -1.31 16 46 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 47 H 0.22 -1.05 5.86 -2.91 -0.02 -1.06 16 48 H 0.12 -1.38 7.90 -2.39 -0.02 -1.39 16 49 H 0.08 -0.74 8.02 -2.39 -0.02 -0.76 16 50 H 0.19 -2.15 7.74 -2.91 -0.02 -2.17 16 51 H 0.25 -3.37 8.06 -2.91 -0.02 -3.40 16 52 H 0.13 0.85 8.06 -2.91 -0.02 0.82 16 53 H 0.14 0.50 8.06 -2.91 -0.02 0.48 16 Total: 0.00 -32.64 440.37 0.82 -31.81 By element: Atomic # 1 Polarization: -20.35 SS G_CDS: -0.33 Total: -20.68 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 8.29 Total: 11.78 kcal Atomic # 7 Polarization: -2.05 SS G_CDS: -6.33 Total: -8.38 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -2.85 Total: -16.02 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.04 Total: 1.49 kcal Total: -32.64 0.82 -31.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4549634.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.125 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds