Wall clock time and date at job start Sun Mar 7 2021 13:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86302 * 109.47374 * 2 1 4 4 C 1.50703 * 109.47197 * 239.99626 * 2 1 3 5 5 C 1.38242 * 119.94305 * 120.00489 * 4 2 1 6 6 C 1.38170 * 120.05225 * 180.02562 * 5 4 2 7 7 C 1.38703 * 119.94467 * 0.02562 * 6 5 4 8 8 O 1.35908 * 120.05491 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99594 * 0.02562 * 8 7 6 10 10 C 1.50706 * 109.47060 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99699 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 H 1.08998 * 112.84967 * 316.19646 * 14 13 12 16 16 C 1.53789 * 113.61152 * 87.50111 * 14 13 12 17 17 C 1.53780 * 87.07735 * 139.98241 * 16 14 13 18 18 H 1.09004 * 113.61395 * 220.01775 * 17 16 14 19 19 N 1.46503 * 113.61804 * 89.11693 * 17 16 14 20 20 C 1.36874 * 126.39756 * 142.21367 * 19 17 16 21 21 C 1.34675 * 106.81562 * 179.84474 * 20 19 17 22 22 N 1.34129 * 108.01910 * 0.41971 * 21 20 19 23 23 C 1.30495 * 109.25609 * 359.73715 * 22 21 20 24 24 C 1.53781 * 87.08381 * 334.56357 * 17 16 14 25 25 C 1.38746 * 119.89100 * 0.25418 * 7 6 5 26 26 N 1.48008 * 120.03034 * 179.72536 * 25 7 6 27 27 O 1.21803 * 120.00102 * 180.02562 * 26 25 7 28 28 O 1.21804 * 119.99838 * 359.97438 * 26 25 7 29 29 C 1.38118 * 119.94467 * 359.47241 * 25 7 6 30 30 H 0.96702 * 114.00078 * 300.00819 * 1 2 3 31 31 H 1.09007 * 109.46930 * 119.99687 * 2 1 3 32 32 H 1.48501 * 109.99720 * 178.68070 * 3 2 1 33 33 H 1.48494 * 109.99753 * 299.99602 * 3 2 1 34 34 H 1.08000 * 119.97301 * 0.02562 * 5 4 2 35 35 H 1.08001 * 120.02354 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47454 * 60.00038 * 9 8 7 37 37 H 1.08998 * 109.47671 * 299.99818 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 40 40 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 41 41 H 1.09001 * 113.60999 * 254.52627 * 16 14 13 42 42 H 1.09003 * 113.61481 * 25.43474 * 16 14 13 43 43 H 1.07996 * 126.59679 * 359.97438 * 20 19 17 44 44 H 1.08003 * 125.99200 * 180.11900 * 21 20 19 45 45 H 1.08001 * 125.65353 * 180.02562 * 23 22 21 46 46 H 1.08997 * 113.61636 * 270.88696 * 24 17 16 47 47 H 1.08997 * 113.61300 * 139.97975 * 24 17 16 48 48 H 1.08001 * 119.97707 * 180.28056 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 2.7261 -0.0376 -2.1396 6 6 3.1875 -0.6867 -3.2688 7 6 2.8522 -2.0143 -3.4899 8 8 3.3043 -2.6547 -4.6000 9 6 4.1214 -1.8997 -5.4969 10 6 4.5258 -2.7684 -6.6601 11 8 4.1515 -3.9207 -6.7153 12 7 5.3042 -2.2651 -7.6385 13 6 5.6968 -3.1094 -8.7695 14 6 6.5665 -2.2993 -9.7330 15 1 6.1776 -1.2972 -9.9135 16 6 8.0638 -2.3274 -9.3832 17 6 8.3340 -2.4370 -10.8931 18 1 9.1413 -3.1253 -11.1433 19 7 8.4626 -1.1400 -11.5620 20 6 9.3319 -0.8302 -12.5729 21 6 9.1140 0.4599 -12.8924 22 7 8.1447 0.9276 -12.0919 23 6 7.7498 -0.0251 -11.2924 24 6 6.9332 -3.0588 -11.0189 25 6 2.0495 -2.6857 -2.5788 26 7 1.6848 -4.1006 -2.8148 27 8 0.9798 -4.6893 -2.0148 28 8 2.0889 -4.6759 -3.8094 29 6 1.5955 -2.0341 -1.4487 30 1 -0.3933 0.4418 0.7650 31 1 1.7923 -0.5138 0.8901 32 1 3.5346 1.7701 0.0321 33 1 1.5616 2.4678 -1.2085 34 1 2.9866 0.9962 -1.9672 35 1 3.8087 -0.1607 -3.9785 36 1 5.0135 -1.5556 -4.9735 37 1 3.5605 -1.0398 -5.8630 38 1 5.6008 -1.3425 -7.5960 39 1 6.2615 -3.9670 -8.4038 40 1 4.8046 -3.4572 -9.2903 41 1 8.4263 -1.3993 -8.9410 42 1 8.3643 -3.2113 -8.8205 43 1 10.0524 -1.4933 -13.0283 44 1 9.6326 1.0210 -13.6557 45 1 6.9800 0.0631 -10.5400 46 1 6.9245 -4.1426 -10.9034 47 1 6.3829 -2.7213 -11.8972 48 1 0.9744 -2.5576 -0.7369 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4549638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:33:12 Heat of formation + Delta-G solvation = 35.153208 kcal Electronic energy + Delta-G solvation = -34879.853485 eV Core-core repulsion = 29908.418922 eV Total energy + Delta-G solvation = -4971.434563 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.151 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.38177 -43.22816 -41.87225 -40.90331 -39.97076 -39.29953 -37.65327 -37.41134 -35.85372 -33.67983 -33.35693 -32.45133 -30.79492 -30.24110 -28.37764 -27.91731 -26.86886 -26.54092 -24.81937 -24.03775 -22.81316 -22.43972 -21.89743 -21.64188 -20.83357 -20.52296 -19.86828 -19.27661 -18.75117 -18.66314 -18.35063 -17.77102 -17.70597 -17.51426 -17.05389 -16.53526 -16.46598 -16.07511 -16.03048 -15.92884 -15.65555 -15.30696 -15.14045 -14.87573 -14.64292 -14.55832 -14.38765 -14.21649 -13.93668 -13.84155 -13.58696 -13.48231 -13.11820 -13.03753 -12.76750 -12.72679 -12.43400 -12.33009 -12.22990 -12.03514 -11.98023 -11.78439 -11.62839 -11.08290 -10.98976 -10.92663 -10.52983 -10.43529 -10.24279 -9.85630 -9.49264 -4.89942 -1.41561 -0.37009 0.04326 0.24554 1.07867 1.12342 1.26905 1.39346 1.67552 1.78467 1.89198 1.91745 2.18822 2.24701 2.96915 3.06408 3.21403 3.23566 3.31825 3.47695 3.50656 3.55812 3.59134 3.66558 3.70590 3.81356 3.90363 3.92743 3.96267 4.12904 4.20817 4.22717 4.22993 4.39524 4.47642 4.48412 4.56365 4.64372 4.68610 4.69323 4.74204 4.78882 4.88516 4.92467 4.94257 5.10089 5.17382 5.30839 5.35298 5.62694 5.79435 6.27810 6.36676 6.37644 6.85513 7.08182 7.11736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.568 6.568 2 C -0.087 4.087 3 Si 0.778 3.222 4 C -0.117 4.117 5 C -0.027 4.027 6 C -0.189 4.189 7 C 0.194 3.806 8 O -0.287 6.287 9 C 0.021 3.979 10 C 0.509 3.491 11 O -0.564 6.564 12 N -0.706 5.706 13 C 0.133 3.867 14 C -0.119 4.119 15 H 0.111 0.889 16 C -0.129 4.129 17 C 0.098 3.902 18 H 0.129 0.871 19 N -0.439 5.439 20 C -0.048 4.048 21 C -0.063 4.063 22 N -0.541 5.541 23 C 0.173 3.827 24 C -0.132 4.132 25 C -0.100 4.100 26 N 0.034 4.966 27 O -0.191 6.191 28 O -0.171 6.171 29 C 0.002 3.998 30 H 0.407 0.593 31 H 0.099 0.901 32 H -0.270 1.270 33 H -0.283 1.283 34 H 0.162 0.838 35 H 0.202 0.798 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.421 0.579 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.199 0.801 44 H 0.174 0.826 45 H 0.225 0.775 46 H 0.117 0.883 47 H 0.071 0.929 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 9.144 4.139 11.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.195 4.195 3 Si 0.680 3.320 4 C -0.118 4.118 5 C -0.045 4.045 6 C -0.208 4.208 7 C 0.144 3.856 8 O -0.197 6.197 9 C -0.056 4.056 10 C 0.294 3.706 11 O -0.442 6.442 12 N -0.361 5.361 13 C 0.010 3.990 14 C -0.137 4.137 15 H 0.128 0.872 16 C -0.166 4.166 17 C -0.005 4.005 18 H 0.147 0.853 19 N -0.121 5.121 20 C -0.181 4.181 21 C -0.210 4.210 22 N -0.260 5.260 23 C -0.109 4.109 24 C -0.171 4.171 25 C -0.186 4.186 26 N 0.546 4.454 27 O -0.401 6.401 28 O -0.385 6.385 29 C -0.017 4.017 30 H 0.259 0.741 31 H 0.117 0.883 32 H -0.196 1.196 33 H -0.209 1.209 34 H 0.179 0.821 35 H 0.219 0.781 36 H 0.160 0.840 37 H 0.157 0.843 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.216 0.784 44 H 0.191 0.809 45 H 0.241 0.759 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.883 9.674 3.211 11.768 hybrid contribution 0.141 -1.673 -0.503 1.752 sum 6.023 8.001 2.708 10.374 Atomic orbital electron populations 1.86443 1.17110 1.82685 1.51619 1.25010 0.86227 1.12266 0.96046 0.93445 0.78090 0.74336 0.86090 1.19692 1.00812 0.92442 0.98904 1.21489 0.91709 1.00164 0.91138 1.21675 1.06245 0.91023 1.01822 1.18839 0.89844 0.91671 0.85262 1.86473 1.63666 1.39495 1.30079 1.23146 0.98012 0.94693 0.89714 1.20363 0.78702 0.87568 0.83949 1.90856 1.55035 1.20108 1.78157 1.45620 1.51495 1.16918 1.22112 1.21360 0.98488 0.93444 0.85731 1.22981 0.95011 1.00480 0.95227 0.87163 1.23479 0.94609 1.05075 0.93477 1.22538 1.00750 0.82385 0.94838 0.85330 1.45437 1.28223 1.10897 1.27557 1.23169 1.00317 0.98917 0.95732 1.22647 1.00433 0.94395 1.03508 1.70275 1.14834 1.31888 1.08985 1.25438 1.00977 0.81748 1.02696 1.23373 0.94140 1.02032 0.97537 1.20865 1.12789 0.82087 1.02817 1.43785 0.98378 1.03647 0.99593 1.94499 1.35302 1.68020 1.42265 1.94681 1.56599 1.68992 1.18187 1.20889 0.93621 0.94417 0.92749 0.74061 0.88303 1.19623 1.20948 0.82103 0.78069 0.84004 0.84328 0.74066 0.91235 0.92275 0.89764 0.86538 0.78384 0.80870 0.75855 0.86439 0.91072 0.82099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.40 12.74 -148.98 -1.90 0.51 16 2 C -0.09 0.54 2.81 71.24 0.20 0.74 16 3 Si 0.78 -7.63 29.78 68.60 2.04 -5.59 16 4 C -0.12 0.11 5.43 -19.85 -0.11 0.00 16 5 C -0.03 0.13 8.66 22.25 0.19 0.32 16 6 C -0.19 1.08 9.04 22.36 0.20 1.28 16 7 C 0.19 0.67 6.67 22.50 0.15 0.82 16 8 O -0.29 -1.71 7.68 -63.49 -0.49 -2.19 16 9 C 0.02 -0.13 5.22 71.24 0.37 0.24 16 10 C 0.51 0.21 7.91 87.66 0.69 0.90 16 11 O -0.56 -7.90 16.50 16.00 0.26 -7.64 16 12 N -0.71 5.77 5.56 -463.05 -2.57 3.20 16 13 C 0.13 -0.89 5.51 86.38 0.48 -0.42 16 14 C -0.12 1.36 3.25 -10.26 -0.03 1.32 16 15 H 0.11 -1.43 5.64 -2.39 -0.01 -1.44 16 16 C -0.13 1.56 7.05 31.12 0.22 1.78 16 17 C 0.10 -0.92 4.88 45.52 0.22 -0.70 16 18 H 0.13 -1.50 8.14 -2.38 -0.02 -1.52 16 19 N -0.44 1.45 2.94 -503.80 -1.48 -0.04 16 20 C -0.05 0.04 11.58 83.09 0.96 1.01 16 21 C -0.06 -0.27 11.87 83.52 0.99 0.72 16 22 N -0.54 -3.98 11.25 -200.30 -2.25 -6.23 16 23 C 0.17 -0.05 11.19 180.26 2.02 1.97 16 24 C -0.13 1.29 7.35 31.12 0.23 1.52 16 25 C -0.10 -0.92 6.86 36.47 0.25 -0.67 16 26 N 0.03 0.59 4.45 -46.25 -0.21 0.38 16 27 O -0.19 -3.53 18.45 18.88 0.35 -3.18 16 28 O -0.17 -3.74 17.24 25.60 0.44 -3.30 16 29 C 0.00 0.01 9.11 22.25 0.20 0.21 16 30 H 0.41 -5.88 8.74 -74.06 -0.65 -6.53 16 31 H 0.10 -0.96 7.96 -2.38 -0.02 -0.97 16 32 H -0.27 1.76 7.11 99.48 0.71 2.47 16 33 H -0.28 1.07 7.11 99.48 0.71 1.77 16 34 H 0.16 -1.44 4.87 -2.91 -0.01 -1.45 16 35 H 0.20 -3.16 6.30 -2.91 -0.02 -3.18 16 36 H 0.14 -2.08 7.66 -2.39 -0.02 -2.10 16 37 H 0.14 -1.93 7.66 -2.39 -0.02 -1.95 16 38 H 0.42 -6.82 8.47 -92.70 -0.79 -7.60 16 39 H 0.07 -0.32 7.84 -2.39 -0.02 -0.34 16 40 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.08 -0.98 8.02 -2.39 -0.02 -1.00 16 42 H 0.12 -1.53 7.90 -2.39 -0.02 -1.55 16 43 H 0.20 -1.39 8.06 -2.91 -0.02 -1.41 16 44 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 45 H 0.23 -1.68 5.86 -2.91 -0.02 -1.69 16 46 H 0.12 -1.33 8.10 -2.39 -0.02 -1.35 16 47 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 48 H 0.16 0.70 7.61 -2.91 -0.02 0.68 16 Total: 0.00 -43.71 408.40 1.09 -42.62 By element: Atomic # 1 Polarization: -29.24 SS G_CDS: -0.34 Total: -29.59 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.24 Total: 11.06 kcal Atomic # 7 Polarization: 3.82 SS G_CDS: -6.52 Total: -2.69 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.33 Total: -15.81 kcal Atomic # 14 Polarization: -7.63 SS G_CDS: 2.04 Total: -5.59 kcal Total: -43.71 1.09 -42.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4549638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.769 kcal (2) G-P(sol) polarization free energy of solvation -43.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds