Wall clock time and date at job start Sun Mar 7 2021 13:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99911 * 2 1 4 4 C 1.38605 * 120.02857 * 180.27613 * 3 2 1 5 5 C 1.38659 * 119.88992 * 180.20943 * 4 3 2 6 6 O 1.35899 * 120.02908 * 179.79305 * 5 4 3 7 7 C 1.42897 * 116.99948 * 359.72253 * 6 5 4 8 8 C 1.50697 * 109.47406 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99605 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00190 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99999 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47342 * 180.02562 * 11 10 8 13 13 H 1.08996 * 112.85233 * 316.19808 * 12 11 10 14 14 C 1.53787 * 113.69063 * 87.46441 * 12 11 10 15 15 C 1.53787 * 87.08044 * 139.99342 * 14 12 11 16 16 H 1.08992 * 113.68777 * 220.00567 * 15 14 12 17 17 N 1.46496 * 113.61393 * 89.11518 * 15 14 12 18 18 C 1.36880 * 126.39785 * 142.49718 * 17 15 14 19 19 C 1.34674 * 106.82015 * 179.73791 * 18 17 15 20 20 N 1.34130 * 108.01710 * 0.23538 * 19 18 17 21 21 C 1.30496 * 109.26014 * 359.97438 * 20 19 18 22 22 C 1.53780 * 113.61705 * 184.99978 * 12 11 10 23 23 C 1.38749 * 119.94414 * 359.51430 * 5 4 3 24 24 C 1.50698 * 119.97380 * 180.27177 * 23 5 4 25 25 O 1.42899 * 109.47470 * 285.00446 * 24 23 5 26 26 Si 1.86301 * 109.47091 * 165.00141 * 24 23 5 27 27 C 1.38199 * 120.05651 * 0.25723 * 23 5 4 28 28 C 1.38157 * 120.10726 * 359.97438 * 27 23 5 29 29 H 1.09001 * 109.47254 * 299.99936 * 1 2 3 30 30 H 1.08999 * 109.47380 * 59.99925 * 1 2 3 31 31 H 1.09002 * 109.46736 * 179.97438 * 1 2 3 32 32 H 1.07998 * 120.06220 * 359.97438 * 4 3 2 33 33 H 1.09001 * 109.47167 * 59.99983 * 7 6 5 34 34 H 1.09000 * 109.47075 * 300.00222 * 7 6 5 35 35 H 0.96996 * 120.00009 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47042 * 60.00244 * 11 10 8 37 37 H 1.09007 * 109.47115 * 300.00807 * 11 10 8 38 38 H 1.08999 * 113.61592 * 25.44587 * 14 12 11 39 39 H 1.08999 * 113.61047 * 254.53982 * 14 12 11 40 40 H 1.08002 * 126.59253 * 0.02562 * 18 17 15 41 41 H 1.07997 * 125.99347 * 180.23004 * 19 18 17 42 42 H 1.07994 * 125.65225 * 179.97438 * 21 20 19 43 43 H 1.09003 * 113.61400 * 105.38775 * 22 12 11 44 44 H 1.08997 * 113.61361 * 334.48332 * 22 12 11 45 45 H 1.09006 * 109.46919 * 45.00376 * 24 23 5 46 46 H 0.96702 * 114.00082 * 299.99676 * 25 24 23 47 47 H 1.48501 * 109.99889 * 58.68710 * 26 24 23 48 48 H 1.48502 * 109.99862 * 180.02562 * 26 24 23 49 49 H 1.07996 * 119.94895 * 179.97438 * 27 23 5 50 50 H 1.07997 * 119.97248 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4300 1.2842 -0.0058 5 6 4.0565 2.5212 -0.0014 6 8 5.4135 2.5963 -0.0028 7 6 6.1316 1.3609 -0.0027 8 6 7.6124 1.6405 -0.0050 9 8 8.0133 2.7851 -0.0061 10 7 8.4912 0.6186 -0.0048 11 6 9.9307 0.8905 -0.0065 12 6 10.6995 -0.4322 -0.0065 13 1 10.2863 -1.1621 0.6895 14 6 10.9547 -0.9985 -1.4134 15 6 12.3545 -1.3946 -0.9144 16 1 13.1437 -1.2298 -1.6479 17 7 12.4070 -2.7291 -0.3124 18 6 13.4295 -3.6319 -0.4263 19 6 13.0707 -4.7188 0.2833 20 7 11.8597 -4.4880 0.8118 21 6 11.4547 -3.2992 0.4570 22 6 12.2228 -0.2594 0.1146 23 6 3.2969 3.6823 -0.0014 24 6 3.9771 5.0270 -0.0028 25 8 4.5046 5.2954 1.2979 26 14 2.7431 6.3467 -0.4570 27 6 1.9170 3.6066 -0.0004 28 6 1.2904 2.3753 0.0000 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0197 0.3794 -0.0099 33 1 5.8690 0.7879 -0.8921 34 1 5.8708 0.7891 0.8879 35 1 8.1705 -0.2968 -0.0036 36 1 10.1932 1.4637 0.8827 37 1 10.1915 1.4621 -0.8973 38 1 10.9685 -0.2382 -2.1943 39 1 10.3226 -1.8509 -1.6622 40 1 14.3496 -3.4966 -0.9755 41 1 13.6554 -5.6185 0.4054 42 1 10.5151 -2.8454 0.7352 43 1 12.6143 -0.5150 1.0992 44 1 12.5832 0.7030 -0.2486 45 1 4.7889 5.0228 -0.7303 46 1 3.8367 5.3143 1.9970 47 1 1.6153 6.3416 0.5091 48 1 3.4017 7.6776 -0.4625 49 1 1.3275 4.5115 0.0000 50 1 0.2120 2.3187 0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946168_4974312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:33:33 Heat of formation + Delta-G solvation = -4.610922 kcal Electronic energy + Delta-G solvation = -33159.821518 eV Core-core repulsion = 28543.459278 eV Total energy + Delta-G solvation = -4616.362241 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.21946 -41.83783 -40.97118 -40.10274 -39.61589 -38.36518 -37.01739 -35.82648 -33.37169 -32.31708 -31.55905 -30.44431 -30.10962 -28.44053 -28.06164 -26.85334 -26.13486 -24.77576 -23.56470 -22.50380 -22.42635 -21.85102 -21.59004 -20.80016 -19.96870 -18.69110 -18.17622 -17.85142 -17.74822 -17.57943 -17.30406 -16.85783 -16.71351 -16.50349 -16.38583 -16.08720 -15.96032 -15.91112 -15.56038 -15.25859 -15.17768 -14.88765 -14.72007 -14.52113 -14.50913 -14.32253 -13.75515 -13.60752 -13.48893 -13.46413 -13.34073 -13.14512 -13.08695 -12.47766 -12.30677 -12.04867 -12.02310 -11.76620 -11.66264 -11.63134 -11.62047 -11.03869 -10.91265 -10.52271 -10.51697 -10.22790 -9.70778 -9.48312 -9.10971 -4.93007 0.19534 0.30199 1.08906 1.31691 1.41626 1.44159 1.55853 1.79474 1.96153 2.19623 2.24598 2.55198 2.57806 3.22191 3.32824 3.49386 3.55625 3.59843 3.67246 3.71370 3.72487 3.80041 3.95074 3.97174 4.02828 4.06191 4.16579 4.21785 4.23438 4.34215 4.40157 4.42168 4.45829 4.48947 4.57102 4.65213 4.65968 4.70073 4.74125 4.78792 4.79659 4.89443 4.93240 5.01808 5.18639 5.23093 5.27365 5.32106 5.36466 5.46842 5.80514 6.12239 6.28371 6.34816 6.42195 6.56954 7.08808 7.12626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.252 4.252 5 C 0.177 3.823 6 O -0.303 6.303 7 C 0.033 3.967 8 C 0.513 3.487 9 O -0.569 6.569 10 N -0.709 5.709 11 C 0.134 3.866 12 C -0.120 4.120 13 H 0.108 0.892 14 C -0.129 4.129 15 C 0.099 3.901 16 H 0.131 0.869 17 N -0.439 5.439 18 C -0.047 4.047 19 C -0.063 4.063 20 N -0.541 5.541 21 C 0.173 3.827 22 C -0.131 4.131 23 C -0.195 4.195 24 C -0.077 4.077 25 O -0.549 6.549 26 Si 0.780 3.220 27 C -0.041 4.041 28 C -0.238 4.238 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.118 0.882 35 H 0.420 0.580 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.200 0.800 41 H 0.175 0.825 42 H 0.223 0.777 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.098 0.902 46 H 0.381 0.619 47 H -0.263 1.263 48 H -0.308 1.308 49 H 0.156 0.844 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.864 -2.751 -4.719 6.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.271 4.271 5 C 0.131 3.869 6 O -0.215 6.215 7 C -0.045 4.045 8 C 0.299 3.701 9 O -0.447 6.447 10 N -0.363 5.363 11 C 0.011 3.989 12 C -0.139 4.139 13 H 0.126 0.874 14 C -0.167 4.167 15 C -0.004 4.004 16 H 0.148 0.852 17 N -0.121 5.121 18 C -0.180 4.180 19 C -0.210 4.210 20 N -0.260 5.260 21 C -0.109 4.109 22 C -0.169 4.169 23 C -0.197 4.197 24 C -0.185 4.185 25 O -0.357 6.357 26 Si 0.684 3.316 27 C -0.059 4.059 28 C -0.256 4.256 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.217 0.783 41 H 0.192 0.808 42 H 0.240 0.760 43 H 0.089 0.911 44 H 0.137 0.863 45 H 0.116 0.884 46 H 0.230 0.770 47 H -0.189 1.189 48 H -0.236 1.236 49 H 0.173 0.827 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.638 -1.659 -4.376 5.928 hybrid contribution 0.583 -0.287 0.970 1.167 sum -3.055 -1.945 -3.406 4.972 Atomic orbital electron populations 1.23399 0.76020 1.05689 1.02685 1.86057 1.23741 1.26594 1.87929 1.18879 0.91683 0.84961 0.92679 1.20556 0.93392 0.97441 1.15709 1.18577 0.81749 0.93133 0.93454 1.86220 1.15474 1.31678 1.88108 1.22753 0.88640 0.86489 1.06592 1.20420 0.88487 0.85182 0.75998 1.90786 1.80766 1.23255 1.49936 1.45666 1.06296 1.09485 1.74877 1.21359 0.78351 0.96962 1.02274 1.22984 0.95731 0.96457 0.98710 0.87419 1.23480 0.93978 1.02134 0.97084 1.22540 1.01863 0.79008 0.97016 0.85158 1.45449 1.15049 1.13807 1.37827 1.23180 0.96403 0.91139 1.07323 1.22655 0.94906 1.00929 1.02520 1.70275 1.13614 1.16413 1.25704 1.25412 0.97580 0.90883 0.97049 1.23370 0.94839 0.99119 0.99622 1.19604 0.93494 0.93978 1.12588 1.25151 1.06264 0.99682 0.87363 1.86649 1.38561 1.93048 1.17461 0.94119 0.75452 0.73409 0.88595 1.20947 0.92041 0.98790 0.94104 1.21399 1.01605 0.91256 1.11383 0.91503 0.91083 0.86586 0.82897 0.85768 0.86451 0.74280 0.92302 0.91087 0.86403 0.89926 0.78263 0.80817 0.76050 0.91085 0.86295 0.88368 0.77025 1.18923 1.23644 0.82726 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.19 10.49 -92.50 -0.97 -1.16 16 3 C 0.16 0.23 6.68 22.49 0.15 0.38 16 4 C -0.25 -0.45 8.97 22.46 0.20 -0.24 16 5 C 0.18 0.90 6.66 22.49 0.15 1.05 16 6 O -0.30 -2.34 8.99 -73.37 -0.66 -3.00 16 7 C 0.03 -0.04 5.22 71.24 0.37 0.33 16 8 C 0.51 1.60 7.91 87.66 0.69 2.29 16 9 O -0.57 -8.52 16.50 15.99 0.26 -8.26 16 10 N -0.71 3.79 5.56 -463.06 -2.57 1.21 16 11 C 0.13 -0.69 5.51 86.38 0.48 -0.21 16 12 C -0.12 1.19 3.25 -10.27 -0.03 1.16 16 13 H 0.11 -1.17 5.64 -2.39 -0.01 -1.18 16 14 C -0.13 1.39 7.06 31.12 0.22 1.61 16 15 C 0.10 -0.84 4.88 45.52 0.22 -0.62 16 16 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 17 N -0.44 0.99 2.94 -503.81 -1.48 -0.49 16 18 C -0.05 0.01 11.58 83.09 0.96 0.97 16 19 C -0.06 -0.33 11.87 83.52 0.99 0.66 16 20 N -0.54 -4.63 11.25 -200.31 -2.25 -6.89 16 21 C 0.17 0.20 11.19 180.26 2.02 2.22 16 22 C -0.13 1.17 7.35 31.12 0.23 1.40 16 23 C -0.20 -0.78 5.27 -19.75 -0.10 -0.88 16 24 C -0.08 -0.44 2.37 71.24 0.17 -0.27 16 25 O -0.55 -5.33 12.88 -148.98 -1.92 -7.25 16 26 Si 0.78 0.33 30.24 68.60 2.07 2.41 16 27 C -0.04 0.02 8.65 22.24 0.19 0.21 16 28 C -0.24 0.28 9.04 22.38 0.20 0.49 16 29 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 30 H 0.07 -0.61 7.66 -2.39 -0.02 -0.63 16 31 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H 0.15 -0.41 6.30 -2.91 -0.02 -0.43 16 33 H 0.12 -0.92 7.65 -2.39 -0.02 -0.94 16 34 H 0.12 -0.71 7.67 -2.39 -0.02 -0.73 16 35 H 0.42 -5.18 8.47 -92.71 -0.79 -5.97 16 36 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.07 -0.26 7.85 -2.38 -0.02 -0.28 16 38 H 0.12 -1.44 7.90 -2.39 -0.02 -1.46 16 39 H 0.08 -0.82 8.02 -2.39 -0.02 -0.84 16 40 H 0.20 -1.30 8.06 -2.91 -0.02 -1.33 16 41 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 42 H 0.22 -1.23 5.86 -2.91 -0.02 -1.25 16 43 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.12 -1.29 8.10 -2.39 -0.02 -1.31 16 45 H 0.10 0.85 7.82 -2.38 -0.02 0.83 16 46 H 0.38 0.87 8.70 -74.06 -0.64 0.23 16 47 H -0.26 -0.21 6.68 99.48 0.66 0.46 16 48 H -0.31 -2.72 7.11 99.48 0.71 -2.01 16 49 H 0.16 -0.70 4.85 -2.91 -0.01 -0.72 16 50 H 0.16 -0.98 6.29 -2.91 -0.02 -1.00 16 Total: 0.00 -33.98 411.05 0.27 -33.71 By element: Atomic # 1 Polarization: -21.41 SS G_CDS: -0.43 Total: -21.84 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 8.22 Total: 11.55 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -6.31 Total: -6.16 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -3.29 Total: -19.66 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.07 Total: 2.41 kcal Total: -33.98 0.27 -33.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946168_4974312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.098 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds