Wall clock time and date at job start Sun Mar 7 2021 13:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35725 * 116.99817 * 2 1 4 4 C 1.38684 * 119.85950 * 359.97438 * 3 2 1 5 5 C 1.38443 * 120.03085 * 179.97438 * 4 3 2 6 6 O 1.35652 * 120.12276 * 180.02562 * 5 4 3 7 7 C 1.42904 * 117.00119 * 0.02562 * 6 5 4 8 8 C 1.40300 * 119.75882 * 359.79280 * 5 4 3 9 9 C 1.47302 * 120.13818 * 180.23043 * 8 5 4 10 10 O 1.21619 * 119.99489 * 303.57378 * 9 8 5 11 11 N 1.34775 * 119.99835 * 123.57322 * 9 8 5 12 12 C 1.44756 * 121.25512 * 4.32814 * 11 9 8 13 13 C 1.51438 * 109.29369 * 283.27911 * 12 11 9 14 14 C 1.46875 * 115.13777 * 266.87036 * 13 12 11 15 15 C 1.54353 * 111.74592 * 66.38560 * 14 13 12 16 16 Si 1.85251 * 110.17125 * 289.11636 * 15 14 13 17 17 C 1.86300 * 109.31109 * 321.43960 * 16 15 14 18 18 C 1.86298 * 109.31166 * 202.01930 * 16 15 14 19 19 C 1.48287 * 121.24678 * 184.60070 * 11 9 8 20 20 C 1.39857 * 119.72787 * 0.48556 * 8 5 4 21 21 C 1.37551 * 119.96442 * 359.46547 * 20 8 5 22 22 C 1.50697 * 119.87759 * 180.27810 * 21 20 8 23 23 O 1.42903 * 109.47296 * 255.43553 * 22 21 20 24 24 Si 1.86294 * 109.47414 * 15.44126 * 22 21 20 25 25 H 1.48493 * 109.47308 * 63.73544 * 24 22 21 26 26 H 1.48501 * 109.47034 * 183.73759 * 24 22 21 27 27 H 1.48501 * 109.47110 * 303.73593 * 24 22 21 28 28 H 1.09002 * 109.47459 * 300.00015 * 1 2 3 29 29 H 1.09000 * 109.47409 * 60.00026 * 1 2 3 30 30 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 31 31 H 1.07996 * 119.98924 * 0.02594 * 4 3 2 32 32 H 1.08992 * 109.47245 * 179.97438 * 7 6 5 33 33 H 1.09006 * 109.46854 * 299.99958 * 7 6 5 34 34 H 1.09004 * 109.46720 * 59.99428 * 7 6 5 35 35 H 1.09006 * 109.55207 * 42.90722 * 12 11 9 36 36 H 1.08999 * 109.55558 * 163.20547 * 12 11 9 37 37 H 1.08996 * 108.42854 * 145.35660 * 13 12 11 38 38 H 1.08997 * 108.15790 * 28.18324 * 13 12 11 39 39 H 1.09004 * 109.02426 * 305.80704 * 14 13 12 40 40 H 1.08997 * 109.02788 * 186.96999 * 14 13 12 41 41 H 1.08995 * 109.35182 * 168.90295 * 15 14 13 42 42 H 1.09005 * 109.35354 * 49.32929 * 15 14 13 43 43 H 1.09006 * 109.47047 * 171.47155 * 17 16 15 44 44 H 1.08993 * 109.47432 * 291.47225 * 17 16 15 45 45 H 1.09001 * 109.47235 * 51.47662 * 17 16 15 46 46 H 1.09000 * 109.47331 * 299.03517 * 18 16 15 47 47 H 1.09001 * 109.47289 * 59.03866 * 18 16 15 48 48 H 1.09003 * 109.46900 * 179.03653 * 18 16 15 49 49 H 1.08998 * 109.64600 * 262.07440 * 19 11 9 50 50 H 1.09000 * 109.64083 * 22.49313 * 19 11 9 51 51 H 1.08005 * 120.02037 * 179.74647 * 20 8 5 52 52 H 1.09009 * 109.46746 * 135.44341 * 22 21 20 53 53 H 0.96702 * 113.99863 * 300.01108 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2869 2.3706 -0.0005 5 6 1.9116 3.6060 0.0000 6 8 1.1718 4.7430 0.0000 7 6 -0.2493 4.5924 0.0000 8 6 3.3128 3.6778 0.0055 9 6 3.9862 4.9878 0.0112 10 8 3.7495 5.7970 -0.8653 11 7 4.8647 5.2896 0.9878 12 6 5.2365 4.3147 1.9912 13 6 4.1192 4.1899 3.0058 14 6 4.2516 5.0502 4.1888 15 6 4.1298 6.5453 3.8252 16 14 5.6303 7.0999 2.8910 17 6 7.1420 6.2861 3.6143 18 6 5.8007 8.9490 3.0408 19 6 5.4820 6.6348 1.0782 20 6 4.0676 2.5003 0.0001 21 6 3.4351 1.2789 0.0006 22 6 4.2503 0.0114 0.0011 23 8 4.2231 -0.5730 -1.3027 24 14 6.0102 0.4051 0.4686 25 1 6.0481 0.9283 1.8578 26 1 6.8331 -0.8280 0.3814 27 1 6.5521 1.4287 -0.4608 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2085 2.3112 -0.0005 32 1 -0.7189 5.5760 0.0005 33 1 -0.5564 4.0431 -0.8900 34 1 -0.5564 4.0430 0.8900 35 1 5.4001 3.3471 1.5167 36 1 6.1499 4.6363 2.4915 37 1 4.0708 3.1533 3.3392 38 1 3.1801 4.4327 2.5085 39 1 5.2242 4.8745 4.6488 40 1 3.4702 4.7936 4.9040 41 1 4.0353 7.1326 4.7385 42 1 3.2439 6.6959 3.2081 43 1 8.0033 6.4885 2.9777 44 1 7.3264 6.6838 4.6122 45 1 6.9808 5.2099 3.6761 46 1 4.9224 9.4308 2.6112 47 1 5.8869 9.2220 4.0925 48 1 6.6925 9.2762 2.5062 49 1 6.4722 6.6150 0.6231 50 1 4.8554 7.3611 0.5606 51 1 5.1465 2.5501 0.0001 52 1 3.8309 -0.6900 0.7224 53 1 3.3364 -0.8041 -1.6117 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_12297780.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 13:47:29 Heat of formation + Delta-G solvation = -133.523942 kcal Electronic energy + Delta-G solvation = -34200.420383 eV Core-core repulsion = 29969.329195 eV Total energy + Delta-G solvation = -4231.091188 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.26427 -40.84372 -40.03209 -38.39711 -38.09664 -37.00169 -34.89653 -32.31932 -32.03720 -29.97351 -29.23536 -29.02666 -28.46478 -28.26808 -27.17949 -26.12544 -25.53564 -23.89521 -22.92086 -21.67543 -20.59039 -19.78923 -18.62747 -18.51061 -17.88520 -17.61629 -17.11875 -17.04736 -16.68044 -16.52708 -16.32076 -15.87087 -15.77010 -15.57577 -15.42084 -15.06987 -14.71722 -14.37512 -14.27466 -14.12777 -14.06326 -13.84387 -13.77573 -13.60944 -13.44469 -13.39698 -13.18658 -13.17213 -12.80656 -12.65704 -12.57093 -12.56785 -12.51248 -12.15914 -11.91762 -11.73375 -11.68729 -11.52134 -11.31356 -11.20335 -11.05473 -10.79854 -10.76051 -10.41537 -9.94995 -9.51449 -9.17465 -0.16928 0.03571 1.16789 1.41575 1.45085 1.48991 1.68686 1.72493 1.92670 1.95905 2.05355 2.10467 2.18843 2.39037 2.57497 3.35974 3.49696 3.56628 3.75591 3.77540 3.96340 4.04216 4.08535 4.10645 4.11963 4.20551 4.23342 4.29510 4.33260 4.39114 4.43081 4.51563 4.54558 4.58738 4.70486 4.77053 4.77932 4.79559 4.84073 4.85798 4.88860 4.90422 4.95674 4.99721 5.01544 5.08706 5.25516 5.28793 5.40315 5.46237 5.51801 5.60049 5.75468 5.96943 6.21666 6.32581 6.66783 7.07883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.312 6.312 3 C 0.204 3.796 4 C -0.295 4.295 5 C 0.204 3.796 6 O -0.325 6.325 7 C 0.014 3.986 8 C -0.208 4.208 9 C 0.565 3.435 10 O -0.579 6.579 11 N -0.584 5.584 12 C 0.064 3.936 13 C -0.143 4.143 14 C -0.106 4.106 15 C -0.419 4.419 16 Si 1.070 2.930 17 C -0.455 4.455 18 C -0.460 4.460 19 C -0.209 4.209 20 C -0.026 4.026 21 C -0.187 4.187 22 C -0.077 4.077 23 O -0.554 6.554 24 Si 0.999 3.001 25 H -0.209 1.209 26 H -0.265 1.265 27 H -0.268 1.268 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.168 0.832 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.147 0.853 52 H 0.094 0.906 53 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -3.652 7.412 8.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.224 6.224 3 C 0.157 3.843 4 C -0.314 4.314 5 C 0.156 3.844 6 O -0.238 6.238 7 C -0.080 4.080 8 C -0.212 4.212 9 C 0.354 3.646 10 O -0.460 6.460 11 N -0.315 5.315 12 C -0.057 4.057 13 C -0.181 4.181 14 C -0.143 4.143 15 C -0.505 4.505 16 Si 1.260 2.740 17 C -0.564 4.564 18 C -0.568 4.568 19 C -0.373 4.373 20 C -0.044 4.044 21 C -0.188 4.188 22 C -0.185 4.185 23 O -0.361 6.361 24 Si 0.819 3.181 25 H -0.131 1.131 26 H -0.190 1.190 27 H -0.193 1.193 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.185 0.815 32 H 0.132 0.868 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.087 0.913 51 H 0.164 0.836 52 H 0.112 0.888 53 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -1.284 -2.971 7.177 7.873 hybrid contribution -2.035 0.157 -1.017 2.280 sum -3.319 -2.815 6.160 7.542 Atomic orbital electron populations 1.23486 0.75776 1.06267 1.02603 1.86041 1.23849 1.25503 1.87014 1.18689 0.90993 0.84439 0.90193 1.21396 1.02117 0.90421 1.17512 1.18744 0.89462 0.85760 0.90432 1.86160 1.21470 1.29138 1.86993 1.23467 0.75903 1.05740 1.02877 1.18950 0.91332 0.93602 1.17271 1.18230 0.79012 0.86411 0.80939 1.90747 1.65210 1.51770 1.38251 1.47651 1.42837 1.13837 1.27190 1.21916 1.00516 0.93447 0.89862 1.20696 0.98568 1.02133 0.96745 1.20266 1.03745 0.93242 0.97043 1.26384 1.14712 1.00820 1.08595 0.78643 0.67509 0.66511 0.61331 1.26434 1.14227 1.07772 1.07950 1.26223 1.04629 1.20619 1.05321 1.27715 1.00104 0.85516 1.23922 1.20942 0.99906 0.89678 0.93874 1.19465 0.91500 0.95994 1.11864 1.25176 1.12135 0.92404 0.88751 1.86672 1.34669 1.82408 1.32306 0.84811 0.72202 0.79896 0.81177 1.13052 1.18971 1.19313 0.91189 0.91512 0.85745 0.81472 0.86811 0.91177 0.90443 0.90019 0.85640 0.89578 0.93343 0.89497 0.91683 0.89463 0.92652 0.90392 0.89532 0.89582 0.91964 0.89985 0.90766 0.90566 0.91292 0.83579 0.88783 0.77369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.10 9.80 113.37 1.11 1.01 16 2 O -0.31 0.57 9.39 -90.47 -0.85 -0.28 16 3 C 0.20 0.34 6.63 22.60 0.15 0.49 16 4 C -0.30 -0.50 8.01 22.43 0.18 -0.32 16 5 C 0.20 1.59 6.69 22.82 0.15 1.74 16 6 O -0.33 -2.93 9.75 -88.70 -0.87 -3.80 16 7 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 8 C -0.21 -2.03 4.03 -20.00 -0.08 -2.11 16 9 C 0.56 7.92 6.45 86.63 0.56 8.48 16 10 O -0.58 -13.35 16.51 -3.12 -0.05 -13.40 16 11 N -0.58 -3.94 2.62 -634.58 -1.66 -5.60 16 12 C 0.06 -0.01 4.89 86.19 0.42 0.41 16 13 C -0.14 0.18 4.84 28.18 0.14 0.32 16 14 C -0.11 0.38 5.28 29.15 0.15 0.54 16 15 C -0.42 0.92 4.73 72.44 0.34 1.26 16 16 Si 1.07 -4.40 10.33 68.60 0.71 -3.69 16 17 C -0.46 3.18 7.85 113.37 0.89 4.07 16 18 C -0.46 1.11 8.65 113.37 0.98 2.09 16 19 C -0.21 -0.87 5.32 127.42 0.68 -0.19 16 20 C -0.03 -0.15 6.60 22.50 0.15 0.00 16 21 C -0.19 -0.62 5.27 -19.80 -0.10 -0.73 16 22 C -0.08 -0.11 2.33 71.24 0.17 0.06 16 23 O -0.55 -2.26 12.65 -148.98 -1.89 -4.14 16 24 Si 1.00 0.87 25.55 68.60 1.75 2.62 16 25 H -0.21 0.89 7.11 99.48 0.71 1.60 16 26 H -0.27 -0.90 7.11 99.48 0.71 -0.19 16 27 H -0.27 -0.99 6.53 99.48 0.65 -0.34 16 28 H 0.07 -0.70 7.65 -2.39 -0.02 -0.72 16 29 H 0.07 -0.62 7.65 -2.39 -0.02 -0.64 16 30 H 0.12 -1.45 8.14 -2.39 -0.02 -1.46 16 31 H 0.17 -0.71 4.50 -2.91 -0.01 -0.73 16 32 H 0.11 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.07 -0.28 7.66 -2.38 -0.02 -0.29 16 34 H 0.08 -0.45 7.66 -2.39 -0.02 -0.46 16 35 H 0.08 -0.08 4.41 -2.38 -0.01 -0.09 16 36 H 0.13 -0.67 3.48 -2.39 -0.01 -0.68 16 37 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.05 0.18 6.76 -2.39 -0.02 0.16 16 39 H 0.09 -0.66 6.37 -2.39 -0.02 -0.68 16 40 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.09 -0.35 7.95 -2.39 -0.02 -0.37 16 42 H 0.05 0.13 7.91 -2.38 -0.02 0.11 16 43 H 0.08 -0.54 7.96 -2.38 -0.02 -0.56 16 44 H 0.09 -0.70 7.96 -2.39 -0.02 -0.72 16 45 H 0.09 -0.74 4.87 -2.39 -0.01 -0.75 16 46 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 47 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 48 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 49 H 0.08 0.18 7.98 -2.39 -0.02 0.16 16 50 H 0.07 0.63 7.27 -2.39 -0.02 0.62 16 51 H 0.15 0.58 3.46 -2.91 -0.01 0.57 16 52 H 0.09 -0.19 7.81 -2.38 -0.02 -0.20 16 53 H 0.38 -0.24 8.64 -74.06 -0.64 -0.88 16 Total: 0.00 -23.44 399.13 5.15 -18.29 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: 1.00 Total: -8.21 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 7.00 Total: 18.20 kcal Atomic # 7 Polarization: -3.94 SS G_CDS: -1.66 Total: -5.60 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -3.65 Total: -21.62 kcal Atomic # 14 Polarization: -3.53 SS G_CDS: 2.46 Total: -1.07 kcal Total: -23.44 5.15 -18.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_12297780.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.229 kcal (2) G-P(sol) polarization free energy of solvation -23.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds