Wall clock time and date at job start Sun Mar 7 2021 14:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86300 * 109.31306 * 2 1 4 4 C 1.85257 * 109.31358 * 119.61058 * 2 1 3 5 5 C 1.54348 * 110.16956 * 202.02521 * 4 2 1 6 6 C 1.46873 * 111.74979 * 289.11746 * 5 4 2 7 7 C 1.51996 * 115.18707 * 66.45953 * 6 5 4 8 8 N 1.44751 * 108.99417 * 266.91617 * 7 6 5 9 9 C 1.34781 * 121.25903 * 283.03932 * 8 7 6 10 10 O 1.21620 * 120.00115 * 171.67607 * 9 8 7 11 11 C 1.47296 * 119.99526 * 351.66795 * 9 8 7 12 12 C 1.39881 * 120.04435 * 20.10732 * 11 9 8 13 13 C 1.36427 * 120.18120 * 179.97438 * 12 11 9 14 14 C 1.39919 * 120.28141 * 359.97438 * 13 12 11 15 15 C 1.47568 * 119.95393 * 180.02562 * 14 13 12 16 16 C 1.36109 * 125.94473 * 0.02562 * 15 14 13 17 17 C 1.40796 * 106.73159 * 179.97438 * 16 15 14 18 18 C 1.34841 * 107.05015 * 359.97438 * 17 16 15 19 19 C 1.50707 * 125.65078 * 180.02562 * 18 17 16 20 20 O 1.42901 * 109.46914 * 299.99675 * 19 18 17 21 21 Si 1.86296 * 109.46720 * 179.97438 * 19 18 17 22 22 H 1.48493 * 109.47330 * 59.99928 * 21 19 18 23 23 H 1.48497 * 109.47078 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47395 * 299.99537 * 21 19 18 25 25 O 1.34228 * 108.69243 * 359.73318 * 18 17 16 26 26 C 1.39601 * 120.08964 * 359.74997 * 14 13 12 27 27 C 1.38285 * 119.81134 * 0.50122 * 26 14 13 28 28 O 1.35674 * 120.13710 * 179.77095 * 27 26 14 29 29 C 1.48297 * 117.48890 * 103.31979 * 8 7 6 30 30 H 1.08999 * 109.46998 * 300.38655 * 1 2 3 31 31 H 1.09003 * 109.46999 * 60.39367 * 1 2 3 32 32 H 1.09009 * 109.46933 * 180.38902 * 1 2 3 33 33 H 1.08994 * 109.47415 * 170.04379 * 3 2 1 34 34 H 1.09003 * 109.46560 * 290.04710 * 3 2 1 35 35 H 1.08998 * 109.46857 * 50.03857 * 3 2 1 36 36 H 1.09001 * 109.35051 * 81.81161 * 4 2 1 37 37 H 1.09000 * 109.23815 * 322.16907 * 4 2 1 38 38 H 1.09001 * 109.02424 * 168.52595 * 5 4 2 39 39 H 1.09000 * 109.02583 * 49.69630 * 5 4 2 40 40 H 1.09010 * 108.33398 * 304.98657 * 6 5 4 41 41 H 1.08995 * 108.20136 * 187.84222 * 6 5 4 42 42 H 1.08997 * 109.54584 * 147.05781 * 7 6 5 43 43 H 1.08998 * 109.54588 * 26.77504 * 7 6 5 44 44 H 1.08001 * 119.90721 * 359.95044 * 12 11 9 45 45 H 1.08005 * 119.85321 * 179.97438 * 13 12 11 46 46 H 1.07988 * 126.63478 * 0.02562 * 16 15 14 47 47 H 1.07998 * 126.47945 * 179.97438 * 17 16 15 48 48 H 1.09002 * 109.46690 * 59.99530 * 19 18 17 49 49 H 0.96699 * 113.99591 * 300.00111 * 20 19 18 50 50 H 1.08000 * 120.09538 * 180.27948 * 26 14 13 51 51 H 0.96695 * 114.00815 * 269.73049 * 28 27 26 52 52 H 1.08996 * 109.64216 * 81.81830 * 29 8 7 53 53 H 1.09001 * 109.63572 * 202.43737 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4791 1.7582 0.0000 4 6 2.4757 -0.8638 1.5200 5 6 3.9192 -0.4201 1.8389 6 6 4.8804 -0.9544 0.8654 7 6 4.7374 -0.4143 -0.5482 8 7 3.8829 -1.3022 -1.3076 9 6 4.3416 -2.4768 -1.7834 10 8 3.5706 -3.2723 -2.2853 11 6 5.7767 -2.7970 -1.6955 12 6 6.5898 -2.1227 -0.7785 13 6 7.9192 -2.4174 -0.6944 14 6 8.4788 -3.3957 -1.5235 15 6 9.9175 -3.7091 -1.4260 16 6 10.8068 -3.1247 -0.5773 17 6 12.0566 -3.7245 -0.8238 18 6 11.8718 -4.6365 -1.7997 19 6 12.9398 -5.5226 -2.3874 20 8 13.9657 -4.7129 -2.9655 21 14 12.1908 -6.6093 -3.7022 22 1 11.6072 -5.7611 -4.7722 23 1 13.2431 -7.4821 -4.2817 24 1 11.1250 -7.4508 -3.1009 25 8 10.5779 -4.6287 -2.1564 26 6 7.6768 -4.0798 -2.4387 27 6 6.3299 -3.7805 -2.5308 28 8 5.5453 -4.4380 -3.4212 29 6 2.4855 -0.8677 -1.5479 30 1 -0.3633 0.5198 0.8865 31 1 -0.3633 0.5077 -0.8935 32 1 -0.3633 -1.0277 0.0070 33 1 3.5545 1.7663 0.1777 34 1 2.2668 2.2175 -0.9655 35 1 1.9764 2.3193 0.7877 36 1 2.4569 -1.9412 1.3555 37 1 1.8274 -0.6154 2.3603 38 1 4.1879 -0.7737 2.8344 39 1 3.9675 0.6687 1.8250 40 1 4.7677 -2.0381 0.8314 41 1 5.8858 -0.7268 1.2195 42 1 5.7189 -0.3611 -1.0193 43 1 4.2927 0.5803 -0.5152 44 1 6.1640 -1.3665 -0.1357 45 1 8.5422 -1.8932 0.0152 46 1 10.5947 -2.3512 0.1457 47 1 12.9873 -3.4972 -0.3253 48 1 13.3679 -6.1455 -1.6019 49 1 13.6557 -4.1316 -3.6733 50 1 8.1078 -4.8382 -3.0755 51 1 5.4926 -4.0129 -4.2881 52 1 2.4558 -0.1804 -2.3933 53 1 1.8624 -1.7373 -1.7568 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_12807986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:15:41 Heat of formation + Delta-G solvation = -43.290259 kcal Electronic energy + Delta-G solvation = -34684.681360 eV Core-core repulsion = 30228.362195 eV Total energy + Delta-G solvation = -4456.319165 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 389.166 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.75998 -42.13719 -39.92535 -38.76007 -38.02497 -37.57723 -34.91103 -34.27219 -33.56822 -31.60781 -30.60096 -29.99094 -29.22267 -28.39682 -27.86716 -26.41153 -25.44496 -24.15633 -23.94149 -22.55341 -21.93722 -21.51319 -20.48279 -19.56977 -18.58898 -18.45265 -17.87893 -17.56100 -17.41561 -17.29824 -16.56066 -16.19439 -16.07768 -15.89067 -15.75556 -15.57793 -15.05216 -14.92746 -14.55913 -14.42716 -14.23239 -14.15955 -13.95232 -13.88423 -13.81035 -13.74329 -13.65213 -13.50260 -13.40277 -13.18473 -13.00343 -12.90466 -12.85195 -12.53056 -12.32581 -12.26128 -12.09474 -11.75285 -11.64400 -11.48335 -11.26101 -11.06863 -10.77864 -10.75992 -10.70261 -10.49953 -10.39035 -9.98300 -9.47938 -8.99787 -0.79119 0.09669 0.64123 1.00886 1.33639 1.36360 1.45703 1.60124 1.70916 1.72425 1.84510 1.85884 1.96642 2.19361 2.56853 2.59519 2.95835 3.26947 3.37842 3.49815 3.54279 3.74116 3.87999 3.98371 3.99725 4.02370 4.05525 4.25221 4.36361 4.43635 4.46119 4.48953 4.53397 4.64350 4.67893 4.76835 4.77608 4.78857 4.84897 4.86946 4.89542 4.90997 4.97676 4.98113 5.03279 5.06908 5.09154 5.19290 5.33462 5.40598 5.44803 5.45864 5.52470 5.54107 5.59963 5.78657 5.96387 6.31447 6.53047 6.60711 7.09410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.079 2.921 3 C -0.454 4.454 4 C -0.425 4.425 5 C -0.107 4.107 6 C -0.164 4.164 7 C 0.047 3.953 8 N -0.581 5.581 9 C 0.547 3.453 10 O -0.572 6.572 11 C -0.177 4.177 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.023 3.977 15 C 0.000 4.000 16 C -0.167 4.167 17 C -0.177 4.177 18 C -0.059 4.059 19 C -0.028 4.028 20 O -0.536 6.536 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.250 1.250 24 H -0.271 1.271 25 O -0.187 6.187 26 C -0.159 4.159 27 C 0.152 3.848 28 O -0.498 6.498 29 C -0.209 4.209 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.221 0.779 45 H 0.176 0.824 46 H 0.186 0.814 47 H 0.172 0.828 48 H 0.155 0.845 49 H 0.393 0.607 50 H 0.131 0.869 51 H 0.405 0.595 52 H 0.078 0.922 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.621 9.437 4.632 11.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.269 2.731 3 C -0.563 4.563 4 C -0.511 4.511 5 C -0.144 4.144 6 C -0.202 4.202 7 C -0.075 4.075 8 N -0.312 5.312 9 C 0.337 3.663 10 O -0.453 6.453 11 C -0.181 4.181 12 C -0.129 4.129 13 C -0.126 4.126 14 C 0.022 3.978 15 C -0.050 4.050 16 C -0.186 4.186 17 C -0.196 4.196 18 C -0.109 4.109 19 C -0.140 4.140 20 O -0.343 6.343 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.174 1.174 24 H -0.196 1.196 25 O -0.086 6.086 26 C -0.177 4.177 27 C 0.106 3.894 28 O -0.310 6.310 29 C -0.373 4.373 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.145 0.855 44 H 0.236 0.764 45 H 0.193 0.807 46 H 0.203 0.797 47 H 0.190 0.810 48 H 0.172 0.828 49 H 0.243 0.757 50 H 0.149 0.851 51 H 0.264 0.736 52 H 0.097 0.903 53 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.013 7.537 4.325 9.198 hybrid contribution -0.549 -0.164 -1.070 1.214 sum 2.464 7.374 3.255 8.428 Atomic orbital electron populations 1.26329 1.21922 1.04152 1.05119 0.78530 0.65330 0.66549 0.62728 1.26428 1.07126 1.17081 1.05654 1.26431 1.02089 1.06693 1.15881 1.20280 0.92637 1.02626 0.98849 1.21149 1.02716 1.01579 0.94762 1.22512 0.97929 0.95825 0.91206 1.47558 1.12527 1.18243 1.52881 1.18390 0.87734 0.82059 0.78128 1.90798 1.58588 1.48991 1.46909 1.20551 0.94100 1.00424 1.03031 1.23492 0.93306 0.99114 0.96998 1.21201 0.95542 0.96806 0.99071 1.18043 0.87353 0.96346 0.96069 1.20607 0.92386 0.94540 0.97424 1.22277 0.91553 1.03264 1.01517 1.21846 1.00135 0.98297 0.99291 1.23406 0.82663 1.03616 1.01166 1.24278 0.88166 0.96049 1.05483 1.86547 1.33385 1.58515 1.55839 0.85217 0.78418 0.78622 0.77546 1.18886 1.17372 1.19613 1.83934 1.20805 1.49902 1.53926 1.21507 0.92376 1.02126 1.01726 1.18531 0.88602 0.90076 0.92159 1.84775 1.68684 1.51330 1.26224 1.27695 0.84867 1.06492 1.18215 0.90184 0.90903 0.92273 0.88973 0.90518 0.89795 0.92836 0.89709 0.91275 0.88962 0.92767 0.86512 0.86838 0.85457 0.76409 0.80692 0.79680 0.81008 0.82804 0.75707 0.85092 0.73557 0.90330 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.59 8.65 113.37 0.98 2.57 16 2 Si 1.08 -7.40 10.35 68.60 0.71 -6.69 16 3 C -0.45 4.63 7.84 113.37 0.89 5.52 16 4 C -0.43 2.04 4.74 72.44 0.34 2.39 16 5 C -0.11 0.89 5.27 29.15 0.15 1.05 16 6 C -0.16 1.35 3.47 28.36 0.10 1.45 16 7 C 0.05 -0.33 4.76 86.38 0.41 0.08 16 8 N -0.58 -1.05 2.60 -645.02 -1.68 -2.73 16 9 C 0.55 5.49 7.04 86.62 0.61 6.10 16 10 O -0.57 -11.24 15.03 15.92 0.24 -11.00 16 11 C -0.18 -1.13 5.77 -19.97 -0.12 -1.25 16 12 C -0.11 0.23 6.84 22.24 0.15 0.38 16 13 C -0.11 0.35 9.48 22.25 0.21 0.56 16 14 C 0.02 0.06 5.87 -20.08 -0.12 -0.05 16 15 C 0.00 0.00 7.02 24.24 0.17 0.17 16 16 C -0.17 0.23 10.26 22.40 0.23 0.46 16 17 C -0.18 0.09 10.77 22.12 0.24 0.33 16 18 C -0.06 -0.09 6.22 24.91 0.15 0.06 16 19 C -0.03 0.05 2.98 71.24 0.21 0.27 16 20 O -0.54 1.05 12.87 -148.98 -1.92 -0.87 16 21 Si 0.98 0.67 27.38 68.60 1.88 2.55 16 22 H -0.26 -0.80 7.11 99.48 0.71 -0.10 16 23 H -0.25 -0.38 7.11 99.48 0.71 0.33 16 24 H -0.27 -1.30 7.11 99.48 0.71 -0.59 16 25 O -0.19 -1.02 8.78 -5.98 -0.05 -1.07 16 26 C -0.16 -1.09 9.65 22.61 0.22 -0.87 16 27 C 0.15 1.39 6.69 22.81 0.15 1.55 16 28 O -0.50 -5.80 11.76 -69.90 -0.82 -6.62 16 29 C -0.21 -0.15 5.41 127.42 0.69 0.54 16 30 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 31 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 32 H 0.06 -0.04 7.96 -2.38 -0.02 -0.06 16 33 H 0.09 -1.20 4.85 -2.39 -0.01 -1.21 16 34 H 0.08 -0.75 7.96 -2.39 -0.02 -0.77 16 35 H 0.08 -0.88 7.96 -2.39 -0.02 -0.90 16 36 H 0.05 0.01 7.91 -2.39 -0.02 -0.01 16 37 H 0.08 -0.49 7.95 -2.39 -0.02 -0.51 16 38 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.09 -1.17 6.34 -2.39 -0.02 -1.19 16 40 H 0.05 -0.14 6.67 -2.38 -0.02 -0.15 16 41 H 0.12 -1.70 7.19 -2.39 -0.02 -1.71 16 42 H 0.11 -1.09 5.30 -2.39 -0.01 -1.10 16 43 H 0.13 -1.49 3.48 -2.39 -0.01 -1.50 16 44 H 0.22 -1.82 1.12 -33.63 -0.04 -1.86 16 45 H 0.18 -1.94 6.95 -2.91 -0.02 -1.96 16 46 H 0.19 -1.54 7.24 -2.92 -0.02 -1.56 16 47 H 0.17 -0.69 8.06 -2.91 -0.02 -0.71 16 48 H 0.15 -0.85 7.96 -2.39 -0.02 -0.87 16 49 H 0.39 -3.05 8.70 -74.06 -0.64 -3.69 16 50 H 0.13 0.96 7.90 -2.91 -0.02 0.94 16 51 H 0.41 1.39 9.06 -74.06 -0.67 0.72 16 52 H 0.08 -0.10 7.99 -2.39 -0.02 -0.12 16 53 H 0.07 0.46 7.14 -2.39 -0.02 0.44 16 Total: 0.00 -28.94 408.62 4.43 -24.51 By element: Atomic # 1 Polarization: -19.76 SS G_CDS: 0.39 Total: -19.37 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.68 Total: 21.29 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -1.68 Total: -2.73 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -2.55 Total: -19.56 kcal Atomic # 14 Polarization: -6.73 SS G_CDS: 2.59 Total: -4.14 kcal Total: -28.94 4.43 -24.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_12807986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.783 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds