Wall clock time and date at job start Sun Mar 7 2021 14:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86299 * 109.15437 * 2 1 4 4 C 1.85246 * 109.31202 * 119.51863 * 2 1 3 5 5 C 1.54359 * 110.16881 * 202.02475 * 4 2 1 6 6 C 1.46876 * 111.74406 * 289.11613 * 5 4 2 7 7 C 1.51995 * 115.18515 * 66.46591 * 6 5 4 8 8 N 1.44757 * 108.99151 * 266.90633 * 7 6 5 9 9 C 1.34775 * 121.25842 * 283.04258 * 8 7 6 10 10 O 1.21278 * 120.00019 * 180.02562 * 9 8 7 11 11 C 1.50697 * 119.99955 * 0.02562 * 9 8 7 12 12 O 1.42895 * 109.47310 * 180.02562 * 11 9 8 13 13 C 1.35903 * 117.00144 * 180.02562 * 12 11 9 14 14 C 1.38708 * 120.05363 * 359.97438 * 13 12 11 15 15 C 1.38167 * 119.94243 * 179.72659 * 14 13 12 16 16 C 1.38249 * 120.05544 * 0.27903 * 15 14 13 17 17 C 1.38284 * 120.10962 * 359.97438 * 16 15 14 18 18 C 1.38121 * 120.05827 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.02745 * 180.02562 * 18 17 16 20 20 O 1.42893 * 109.47347 * 105.00092 * 19 18 17 21 21 Si 1.86301 * 109.47287 * 344.99703 * 19 18 17 22 22 H 1.48504 * 109.47016 * 60.00205 * 21 19 18 23 23 H 1.48495 * 109.47290 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47119 * 300.00235 * 21 19 18 25 25 C 1.48292 * 117.48838 * 103.31693 * 8 7 6 26 26 H 1.08999 * 109.47343 * 300.48291 * 1 2 3 27 27 H 1.09003 * 109.47253 * 60.48221 * 1 2 3 28 28 H 1.09002 * 109.47395 * 180.48167 * 1 2 3 29 29 H 1.08997 * 109.47411 * 170.28249 * 3 2 1 30 30 H 1.09004 * 109.47066 * 290.28744 * 3 2 1 31 31 H 1.09008 * 109.47066 * 50.28649 * 3 2 1 32 32 H 1.09002 * 109.35351 * 81.81755 * 4 2 1 33 33 H 1.08998 * 109.24229 * 322.16422 * 4 2 1 34 34 H 1.08993 * 109.02758 * 168.52821 * 5 4 2 35 35 H 1.08997 * 109.02448 * 49.69496 * 5 4 2 36 36 H 1.08997 * 108.33784 * 304.98265 * 6 5 4 37 37 H 1.09005 * 108.19787 * 187.83777 * 6 5 4 38 38 H 1.09002 * 109.55056 * 147.05597 * 7 6 5 39 39 H 1.08994 * 109.55212 * 26.76779 * 7 6 5 40 40 H 1.08998 * 109.47376 * 59.99818 * 11 9 8 41 41 H 1.08999 * 109.46872 * 299.99999 * 11 9 8 42 42 H 1.07995 * 120.03000 * 0.02562 * 14 13 12 43 43 H 1.07993 * 119.97468 * 180.25332 * 15 14 13 44 44 H 1.07998 * 119.94196 * 179.97438 * 16 15 14 45 45 H 1.08010 * 119.97297 * 180.02562 * 17 16 15 46 46 H 1.09005 * 109.46839 * 225.00288 * 19 18 17 47 47 H 0.96699 * 114.00035 * 179.97438 * 20 19 18 48 48 H 1.09004 * 109.63964 * 81.82472 * 25 8 7 49 49 H 1.08998 * 109.64463 * 202.43889 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7599 0.0000 4 6 2.4756 -0.8614 1.5213 5 6 3.9192 -0.4171 1.8395 6 6 4.8804 -0.9531 0.8668 7 6 4.7373 -0.4151 -0.5476 8 7 3.8828 -1.3043 -1.3056 9 6 4.3415 -2.4797 -1.7794 10 8 3.6058 -3.2070 -2.4123 11 6 5.7686 -2.8901 -1.5229 12 8 6.0127 -4.1644 -2.1216 13 6 7.2612 -4.6829 -1.9816 14 6 8.2312 -3.9795 -1.2829 15 6 9.4980 -4.5114 -1.1371 16 6 9.8008 -5.7410 -1.6919 17 6 8.8369 -6.4418 -2.3934 18 6 7.5687 -5.9149 -2.5411 19 6 6.5187 -6.6795 -3.3052 20 8 5.5852 -7.2531 -2.3880 21 14 7.3321 -8.0342 -4.2922 22 1 8.0450 -8.9568 -3.3725 23 1 6.2975 -8.7872 -5.0456 24 1 8.3022 -7.4380 -5.2454 25 6 2.4855 -0.8703 -1.5465 26 1 -0.3634 0.5213 0.8856 27 1 -0.3634 0.5063 -0.8943 28 1 -0.3634 -1.0276 0.0086 29 1 3.5502 1.7708 0.1735 30 1 2.2568 2.2200 -0.9640 31 1 1.9731 2.3185 0.7906 32 1 2.4569 -1.9390 1.3585 33 1 1.8274 -0.6115 2.3612 34 1 4.1879 -0.7690 2.8355 35 1 3.9675 0.6717 1.8238 36 1 4.7676 -2.0367 0.8347 37 1 5.8858 -0.7248 1.2205 38 1 5.7188 -0.3627 -1.0189 39 1 4.2927 0.5795 -0.5163 40 1 5.9407 -2.9542 -0.4485 41 1 6.4427 -2.1508 -1.9554 42 1 7.9951 -3.0191 -0.8490 43 1 10.2525 -3.9660 -0.5897 44 1 10.7917 -6.1548 -1.5772 45 1 9.0758 -7.4024 -2.8256 46 1 5.9955 -6.0022 -3.9803 47 1 4.8792 -7.7606 -2.8112 48 1 2.4557 -0.1843 -2.3931 49 1 1.8622 -1.7401 -1.7540 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_2989392.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:32:37 Heat of formation + Delta-G solvation = -97.764030 kcal Electronic energy + Delta-G solvation = -28161.154814 eV Core-core repulsion = 24405.834103 eV Total energy + Delta-G solvation = -3755.320711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.72339 -40.79575 -38.62778 -38.02912 -37.50934 -34.92367 -32.90993 -31.46528 -30.42207 -29.57359 -29.17939 -28.30995 -26.73274 -26.59277 -25.33017 -23.40922 -22.46799 -21.67955 -20.23961 -19.39568 -18.52924 -18.11750 -17.65469 -17.38070 -16.94697 -16.69010 -16.31435 -15.86542 -15.50307 -15.37614 -15.30884 -15.05622 -14.80995 -14.36434 -14.26268 -14.19342 -13.90587 -13.80461 -13.73874 -13.55975 -13.39906 -13.27998 -13.19518 -13.01579 -12.79084 -12.67306 -12.51981 -12.24109 -12.10575 -11.78965 -11.76047 -11.68575 -11.42273 -11.18022 -10.84148 -10.77389 -10.42111 -10.28872 -9.98634 -9.53554 -9.23728 0.20217 0.38867 1.11538 1.30645 1.41718 1.42023 1.46765 1.67406 1.83522 1.92867 1.94447 2.50776 2.56713 2.65271 3.34135 3.50181 3.73254 3.80478 3.89282 3.91231 3.93511 4.09429 4.14434 4.16117 4.23338 4.31278 4.45291 4.49702 4.50243 4.57817 4.62937 4.75057 4.77204 4.84287 4.85805 4.88687 4.95134 4.95281 5.00986 5.08298 5.26312 5.30187 5.35142 5.40630 5.43319 5.48956 5.50992 5.58202 5.72846 5.76168 6.19296 6.35833 6.75482 7.02781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.080 2.920 3 C -0.455 4.455 4 C -0.425 4.425 5 C -0.109 4.109 6 C -0.151 4.151 7 C 0.066 3.934 8 N -0.582 5.582 9 C 0.506 3.494 10 O -0.576 6.576 11 C 0.037 3.963 12 O -0.312 6.312 13 C 0.128 3.872 14 C -0.211 4.211 15 C -0.073 4.073 16 C -0.155 4.155 17 C -0.098 4.098 18 C -0.135 4.135 19 C -0.085 4.085 20 O -0.562 6.562 21 Si 0.992 3.008 22 H -0.253 1.253 23 H -0.259 1.259 24 H -0.253 1.253 25 C -0.206 4.206 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.050 0.950 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.157 0.843 43 H 0.159 0.841 44 H 0.152 0.848 45 H 0.137 0.863 46 H 0.062 0.938 47 H 0.391 0.609 48 H 0.078 0.922 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 7.209 3.712 9.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.270 2.730 3 C -0.563 4.563 4 C -0.510 4.510 5 C -0.146 4.146 6 C -0.189 4.189 7 C -0.056 4.056 8 N -0.315 5.315 9 C 0.294 3.706 10 O -0.455 6.455 11 C -0.040 4.040 12 O -0.224 6.224 13 C 0.083 3.917 14 C -0.230 4.230 15 C -0.091 4.091 16 C -0.173 4.173 17 C -0.116 4.116 18 C -0.136 4.136 19 C -0.194 4.194 20 O -0.370 6.370 21 Si 0.814 3.186 22 H -0.177 1.177 23 H -0.183 1.183 24 H -0.176 1.176 25 C -0.370 4.370 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.175 0.825 43 H 0.177 0.823 44 H 0.170 0.830 45 H 0.154 0.846 46 H 0.080 0.920 47 H 0.240 0.760 48 H 0.096 0.904 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.163 6.328 3.192 8.220 hybrid contribution -1.071 -0.317 -0.309 1.159 sum 3.092 6.011 2.883 7.349 Atomic orbital electron populations 1.26321 1.21782 1.04242 1.05143 0.78509 0.65402 0.66465 0.62655 1.26438 1.06985 1.17288 1.05601 1.26440 1.01953 1.06747 1.15890 1.20279 0.92984 1.02375 0.98964 1.20931 1.02279 1.00985 0.94737 1.22024 0.96834 0.95380 0.91313 1.47666 1.12737 1.18013 1.53116 1.20535 0.89189 0.81917 0.78989 1.90712 1.59471 1.53597 1.41767 1.22842 0.94589 0.85514 1.01082 1.86163 1.28581 1.34718 1.72979 1.19061 0.83804 0.93145 0.95689 1.21607 0.94313 1.02656 1.04392 1.21409 0.95937 0.95066 0.96654 1.21396 1.00429 0.96012 0.99481 1.21163 0.92005 0.99921 0.98519 1.18943 0.95402 0.94401 1.04808 1.24868 0.94008 1.03771 0.96752 1.86460 1.42350 1.72204 1.36028 0.85151 0.79456 0.76751 0.77259 1.17739 1.18343 1.17630 1.27697 0.84750 1.06463 1.18086 0.90202 0.90854 0.92144 0.89195 0.90499 0.89913 0.92660 0.89881 0.91877 0.89477 0.93157 0.88252 0.87750 0.85893 0.86699 0.86122 0.82520 0.82298 0.83044 0.84559 0.91953 0.76038 0.90377 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.51 8.65 113.37 0.98 2.49 16 2 Si 1.08 -7.02 10.34 68.60 0.71 -6.31 16 3 C -0.45 4.26 7.85 113.37 0.89 5.15 16 4 C -0.42 1.82 4.74 72.44 0.34 2.16 16 5 C -0.11 0.77 5.28 29.16 0.15 0.92 16 6 C -0.15 1.17 4.63 28.36 0.13 1.30 16 7 C 0.07 -0.50 5.00 86.37 0.43 -0.07 16 8 N -0.58 -0.56 2.60 -629.85 -1.64 -2.20 16 9 C 0.51 4.36 7.36 87.66 0.65 5.00 16 10 O -0.58 -11.48 16.13 16.01 0.26 -11.22 16 11 C 0.04 0.11 3.90 71.23 0.28 0.38 16 12 O -0.31 -3.59 9.01 -73.42 -0.66 -4.25 16 13 C 0.13 1.09 6.66 22.51 0.15 1.24 16 14 C -0.21 -0.29 9.04 22.37 0.20 -0.09 16 15 C -0.07 0.06 10.04 22.26 0.22 0.28 16 16 C -0.16 -0.17 10.04 22.28 0.22 0.06 16 17 C -0.10 -0.51 8.66 22.25 0.19 -0.32 16 18 C -0.13 -1.25 5.30 -19.77 -0.10 -1.35 16 19 C -0.09 -0.72 2.37 71.24 0.17 -0.56 16 20 O -0.56 -5.85 12.86 -148.98 -1.92 -7.77 16 21 Si 0.99 3.52 25.49 68.60 1.75 5.27 16 22 H -0.25 -1.02 6.73 99.48 0.67 -0.35 16 23 H -0.26 -0.93 7.11 99.48 0.71 -0.23 16 24 H -0.25 -0.95 7.11 99.48 0.71 -0.24 16 25 C -0.21 -0.15 5.36 127.42 0.68 0.54 16 26 H 0.08 -0.35 7.96 -2.39 -0.02 -0.36 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.06 -0.05 7.96 -2.39 -0.02 -0.07 16 29 H 0.09 -1.06 4.86 -2.39 -0.01 -1.07 16 30 H 0.08 -0.70 7.96 -2.38 -0.02 -0.72 16 31 H 0.08 -0.79 7.96 -2.38 -0.02 -0.81 16 32 H 0.05 0.01 7.91 -2.39 -0.02 -0.01 16 33 H 0.08 -0.42 7.95 -2.39 -0.02 -0.44 16 34 H 0.06 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.09 -0.94 6.35 -2.39 -0.02 -0.95 16 36 H 0.05 -0.18 6.20 -2.39 -0.01 -0.19 16 37 H 0.10 -1.20 8.14 -2.38 -0.02 -1.22 16 38 H 0.10 -1.24 7.12 -2.39 -0.02 -1.26 16 39 H 0.12 -1.38 3.50 -2.39 -0.01 -1.38 16 40 H 0.12 -0.25 5.90 -2.39 -0.01 -0.26 16 41 H 0.12 -0.49 7.08 -2.39 -0.02 -0.51 16 42 H 0.16 -0.86 6.30 -2.91 -0.02 -0.88 16 43 H 0.16 -1.15 8.06 -2.91 -0.02 -1.18 16 44 H 0.15 -0.63 8.06 -2.91 -0.02 -0.65 16 45 H 0.14 0.34 4.89 -2.91 -0.01 0.33 16 46 H 0.06 0.60 7.83 -2.38 -0.02 0.58 16 47 H 0.39 0.78 8.74 -74.06 -0.65 0.13 16 48 H 0.08 -0.07 7.99 -2.38 -0.02 -0.09 16 49 H 0.07 0.45 7.21 -2.39 -0.02 0.43 16 Total: 0.00 -26.51 374.29 5.13 -21.38 By element: Atomic # 1 Polarization: -13.09 SS G_CDS: 1.03 Total: -12.06 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 5.59 Total: 17.14 kcal Atomic # 7 Polarization: -0.56 SS G_CDS: -1.64 Total: -2.20 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -2.32 Total: -23.23 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.46 Total: -1.04 kcal Total: -26.51 5.13 -21.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_2989392.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.379 kcal (2) G-P(sol) polarization free energy of solvation -26.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds