Wall clock time and date at job start Sun Mar 7 2021 14:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47184 * 180.02562 * 11 9 8 13 13 O 1.42904 * 109.46984 * 180.02562 * 12 11 9 14 14 C 1.35897 * 116.99599 * 179.97438 * 13 12 11 15 15 C 1.38729 * 120.06204 * 359.72217 * 14 13 12 16 16 C 1.38146 * 119.94915 * 179.74362 * 15 14 13 17 17 C 1.38270 * 120.04973 * 0.50780 * 16 15 14 18 18 C 1.50704 * 119.94167 * 179.74661 * 17 16 15 19 19 O 1.42904 * 109.47030 * 245.02421 * 18 17 16 20 20 Si 1.86308 * 109.47041 * 5.02235 * 18 17 16 21 21 H 1.48498 * 109.47029 * 60.00134 * 20 18 17 22 22 H 1.48500 * 109.46783 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47099 * 300.00050 * 20 18 17 24 24 C 1.38263 * 120.11533 * 359.77040 * 17 16 15 25 25 C 1.38149 * 120.05556 * 359.97426 * 24 17 16 26 26 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 27 27 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 28 28 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 30 30 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 31 31 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 32 32 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 33 33 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 34 34 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 35 35 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 36 36 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 37 37 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 38 38 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 39 39 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 40 40 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 41 41 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 42 42 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 43 43 H 1.08996 * 109.46864 * 299.99496 * 12 11 9 44 44 H 1.08994 * 109.47471 * 59.99991 * 12 11 9 45 45 H 1.08000 * 120.02355 * 0.02562 * 15 14 13 46 46 H 1.07997 * 119.97442 * 180.23711 * 16 15 14 47 47 H 1.08999 * 109.47171 * 125.01997 * 18 17 16 48 48 H 0.96699 * 113.99537 * 59.99910 * 19 18 17 49 49 H 1.07995 * 119.97067 * 179.97438 * 24 17 16 50 50 H 1.07996 * 120.02943 * 179.97438 * 25 24 17 51 51 H 1.09000 * 109.63462 * 202.69778 * 26 8 7 52 52 H 1.08995 * 109.64291 * 82.07444 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 6 6.0292 -4.2557 -2.1624 13 8 7.3823 -4.6452 -1.9187 14 6 7.7799 -5.8427 -2.4234 15 6 6.8847 -6.6293 -3.1336 16 6 7.2928 -7.8438 -3.6502 17 6 8.5896 -8.2803 -3.4509 18 6 9.0307 -9.6082 -4.0106 19 8 9.3456 -10.4969 -2.9367 20 14 7.6569 -10.3367 -5.0369 21 1 7.3296 -9.4133 -6.1528 22 1 8.0913 -11.6455 -5.5879 23 1 6.4547 -10.5323 -4.1874 24 6 9.4822 -7.5009 -2.7386 25 6 9.0804 -6.2832 -2.2245 26 6 2.4839 -0.8729 -1.5417 27 1 -0.3633 0.5214 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 -0.3634 -1.0276 0.0087 30 1 3.5499 1.7709 0.1759 31 1 2.2592 2.2192 -0.9648 32 1 1.9713 2.3192 0.7889 33 1 2.4568 -1.9390 1.3586 34 1 1.8275 -0.6114 2.3613 35 1 4.1880 -0.7692 2.8354 36 1 3.9678 0.6715 1.8238 37 1 5.8869 -0.7284 1.2192 38 1 4.7652 -2.0367 0.8320 39 1 4.2908 0.5826 -0.5119 40 1 5.7174 -0.3573 -1.0178 41 1 6.4424 -2.1518 -1.9556 42 1 5.9408 -2.9539 -0.4479 43 1 5.3552 -4.9947 -1.7295 44 1 5.8569 -4.1920 -3.2368 45 1 5.8707 -6.2904 -3.2863 46 1 6.5973 -8.4548 -4.2063 47 1 9.9131 -9.4647 -4.6342 48 1 8.6049 -10.6706 -2.3400 49 1 10.4944 -7.8443 -2.5840 50 1 9.7779 -5.6749 -1.6678 51 1 1.8612 -1.7441 -1.7452 52 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:33:06 Heat of formation + Delta-G solvation = -115.168178 kcal Electronic energy + Delta-G solvation = -28968.756323 eV Core-core repulsion = 25057.143292 eV Total energy + Delta-G solvation = -3911.613031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.43539 -40.94079 -39.14246 -38.17722 -37.13066 -34.99567 -33.43226 -32.01957 -31.42837 -30.12828 -29.47308 -28.59243 -27.76174 -26.30340 -25.72525 -24.84529 -23.29953 -22.16050 -21.73638 -20.19279 -19.34598 -18.39490 -17.83351 -17.44016 -17.33028 -16.96963 -16.57999 -16.41844 -15.99547 -15.72377 -15.64738 -15.41944 -15.04616 -14.85411 -14.59593 -14.40533 -14.39562 -14.24644 -14.04808 -13.97067 -13.75575 -13.64805 -13.52820 -13.42499 -13.41323 -13.01573 -12.85330 -12.78726 -12.63564 -12.21878 -12.07594 -12.00570 -11.88791 -11.81493 -11.60035 -11.48462 -11.28601 -11.00610 -10.80364 -10.62102 -10.36181 -9.96796 -9.52460 -9.13346 0.35465 0.38338 1.19696 1.35618 1.45853 1.51417 1.54731 1.60355 1.65760 1.87193 1.94492 2.36927 2.39546 2.73310 3.46382 3.52825 3.58098 3.68988 3.76440 3.80572 3.87414 3.88842 3.94823 4.00641 4.23512 4.26620 4.31236 4.34650 4.41855 4.48734 4.52484 4.56940 4.59430 4.59961 4.62316 4.63768 4.64738 4.67670 4.78178 4.79268 4.84481 4.91773 5.01455 5.06859 5.17467 5.24555 5.28929 5.30821 5.35536 5.41113 5.48157 5.55756 5.77938 6.29784 6.40607 6.59190 7.11711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.013 2.987 3 C -0.456 4.456 4 C -0.411 4.411 5 C -0.106 4.106 6 C -0.149 4.149 7 C 0.079 3.921 8 N -0.591 5.591 9 C 0.520 3.480 10 O -0.540 6.540 11 C -0.142 4.142 12 C 0.073 3.927 13 O -0.316 6.316 14 C 0.138 3.862 15 C -0.202 4.202 16 C -0.084 4.084 17 C -0.159 4.159 18 C -0.074 4.074 19 O -0.540 6.540 20 Si 0.947 3.053 21 H -0.251 1.251 22 H -0.254 1.254 23 H -0.253 1.253 24 C -0.050 4.050 25 C -0.151 4.151 26 C -0.184 4.184 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.133 0.867 46 H 0.122 0.878 47 H 0.117 0.883 48 H 0.376 0.624 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.095 0.905 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 4.656 2.796 5.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.558 4.558 2 Si 1.207 2.793 3 C -0.563 4.563 4 C -0.498 4.498 5 C -0.143 4.143 6 C -0.187 4.187 7 C -0.044 4.044 8 N -0.324 5.324 9 C 0.308 3.692 10 O -0.418 6.418 11 C -0.182 4.182 12 C -0.002 4.002 13 O -0.229 6.229 14 C 0.093 3.907 15 C -0.221 4.221 16 C -0.102 4.102 17 C -0.160 4.160 18 C -0.185 4.185 19 O -0.345 6.345 20 Si 0.770 3.230 21 H -0.174 1.174 22 H -0.178 1.178 23 H -0.176 1.176 24 C -0.068 4.068 25 C -0.169 4.169 26 C -0.352 4.352 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.151 0.849 46 H 0.140 0.860 47 H 0.135 0.865 48 H 0.223 0.777 49 H 0.153 0.847 50 H 0.152 0.848 51 H 0.113 0.887 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.723 4.025 1.746 4.446 hybrid contribution -0.426 0.271 0.399 0.644 sum -1.149 4.296 2.145 4.937 Atomic orbital electron populations 1.26095 1.20004 1.04832 1.04841 0.79463 0.67299 0.66774 0.65747 1.26499 1.06089 1.18698 1.05019 1.26258 1.00819 1.07772 1.14907 1.20223 0.93764 1.01155 0.99185 1.20891 1.00849 1.02129 0.94872 1.21671 0.96211 0.95042 0.91471 1.47652 1.11966 1.18902 1.53860 1.20233 0.89016 0.81158 0.78778 1.90724 1.58690 1.52124 1.40215 1.21592 0.94660 0.97566 1.04382 1.22448 0.80919 0.95645 1.01214 1.85976 1.30153 1.33818 1.73002 1.18997 0.93609 0.84801 0.93334 1.21251 1.00435 0.96714 1.03707 1.20851 0.95264 0.95827 0.98260 1.20198 0.94300 0.98282 1.03209 1.24880 1.09899 0.88708 0.95028 1.86511 1.41074 1.65465 1.41423 0.85730 0.77146 0.80577 0.79539 1.17448 1.17827 1.17648 1.20830 0.99606 0.92060 0.94346 1.20516 0.93930 0.97806 1.04691 1.27120 0.85427 1.07341 1.15295 0.90791 0.90939 0.90999 0.90532 0.90917 0.90613 0.90634 0.90295 0.91546 0.91532 0.90676 0.91346 0.87900 0.89883 0.87589 0.87394 0.90953 0.90943 0.84912 0.86002 0.86532 0.77695 0.84721 0.84821 0.88664 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.01 8.65 101.05 0.87 1.89 16 2 Si 1.01 -3.54 10.32 -169.99 -1.75 -5.29 16 3 C -0.46 1.61 7.85 101.05 0.79 2.40 16 4 C -0.41 1.03 4.74 37.86 0.18 1.21 16 5 C -0.11 0.31 5.27 -28.96 -0.15 0.16 16 6 C -0.15 0.48 4.63 -30.18 -0.14 0.34 16 7 C 0.08 -0.25 5.02 -5.37 -0.03 -0.27 16 8 N -0.59 0.33 2.61 -112.85 -0.29 0.04 16 9 C 0.52 0.83 7.28 -10.99 -0.08 0.75 16 10 O -0.54 -2.94 15.61 5.56 0.09 -2.86 16 11 C -0.14 0.09 4.75 -27.88 -0.13 -0.04 16 12 C 0.07 0.08 4.03 37.16 0.15 0.23 16 13 O -0.32 -0.67 10.14 -19.42 -0.20 -0.87 16 14 C 0.14 0.34 6.69 -39.22 -0.26 0.08 16 15 C -0.20 -0.42 9.04 -39.43 -0.36 -0.78 16 16 C -0.08 -0.13 8.66 -39.60 -0.34 -0.48 16 17 C -0.16 -0.20 5.35 -104.60 -0.56 -0.76 16 18 C -0.07 -0.01 2.80 36.01 0.10 0.09 16 19 O -0.54 -0.44 12.83 -35.23 -0.45 -0.89 16 20 Si 0.95 0.14 25.14 -169.99 -4.27 -4.13 16 21 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 22 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 23 H -0.25 -0.09 7.04 56.52 0.40 0.30 16 24 C -0.05 -0.06 9.68 -39.60 -0.38 -0.44 16 25 C -0.15 -0.25 9.99 -39.43 -0.39 -0.64 16 26 C -0.18 0.17 5.35 60.84 0.33 0.50 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.08 -0.31 4.86 -51.93 -0.25 -0.56 16 31 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 32 H 0.07 -0.25 7.96 -51.93 -0.41 -0.67 16 33 H 0.07 -0.10 7.91 -51.92 -0.41 -0.51 16 34 H 0.08 -0.21 7.95 -51.93 -0.41 -0.62 16 35 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 36 H 0.07 -0.26 6.34 -51.93 -0.33 -0.59 16 37 H 0.07 -0.31 8.14 -51.93 -0.42 -0.74 16 38 H 0.07 -0.15 6.19 -51.93 -0.32 -0.47 16 39 H 0.10 -0.44 3.48 -51.93 -0.18 -0.62 16 40 H 0.08 -0.35 7.14 -51.93 -0.37 -0.72 16 41 H 0.11 -0.22 7.57 -51.93 -0.39 -0.62 16 42 H 0.11 -0.22 6.38 -51.93 -0.33 -0.55 16 43 H 0.07 0.10 7.61 -51.93 -0.39 -0.29 16 44 H 0.07 0.11 7.63 -51.93 -0.40 -0.29 16 45 H 0.13 0.16 6.30 -52.49 -0.33 -0.17 16 46 H 0.12 0.05 4.86 -52.49 -0.25 -0.21 16 47 H 0.12 -0.08 7.96 -51.93 -0.41 -0.50 16 48 H 0.38 -0.84 8.70 45.56 0.40 -0.44 16 49 H 0.13 -0.01 8.06 -52.49 -0.42 -0.44 16 50 H 0.13 0.04 8.06 -52.49 -0.42 -0.38 16 51 H 0.09 0.07 7.21 -51.93 -0.37 -0.30 16 52 H 0.07 -0.10 7.98 -51.93 -0.41 -0.51 16 LS Contribution 395.95 15.07 5.97 5.97 Total: 0.00 -7.37 395.95 -9.07 -16.44 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -7.74 Total: -12.64 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.41 Total: 4.23 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -0.29 Total: 0.04 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.56 Total: -4.62 kcal Atomic # 14 Polarization: -3.39 SS G_CDS: -6.03 Total: -9.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -7.37 -9.07 -16.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.731 kcal (2) G-P(sol) polarization free energy of solvation -7.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds