Wall clock time and date at job start Sun Mar 7 2021 14:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47184 * 180.02562 * 11 9 8 13 13 O 1.42904 * 109.46984 * 180.02562 * 12 11 9 14 14 C 1.35897 * 116.99599 * 179.97438 * 13 12 11 15 15 C 1.38729 * 120.06204 * 359.72217 * 14 13 12 16 16 C 1.38146 * 119.94915 * 179.74362 * 15 14 13 17 17 C 1.38270 * 120.04973 * 0.50780 * 16 15 14 18 18 C 1.50704 * 119.94167 * 179.74661 * 17 16 15 19 19 O 1.42904 * 109.47030 * 245.02421 * 18 17 16 20 20 Si 1.86308 * 109.47041 * 5.02235 * 18 17 16 21 21 H 1.48498 * 109.47029 * 60.00134 * 20 18 17 22 22 H 1.48500 * 109.46783 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47099 * 300.00050 * 20 18 17 24 24 C 1.38263 * 120.11533 * 359.77040 * 17 16 15 25 25 C 1.38149 * 120.05556 * 359.97426 * 24 17 16 26 26 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 27 27 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 28 28 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 30 30 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 31 31 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 32 32 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 33 33 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 34 34 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 35 35 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 36 36 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 37 37 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 38 38 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 39 39 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 40 40 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 41 41 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 42 42 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 43 43 H 1.08996 * 109.46864 * 299.99496 * 12 11 9 44 44 H 1.08994 * 109.47471 * 59.99991 * 12 11 9 45 45 H 1.08000 * 120.02355 * 0.02562 * 15 14 13 46 46 H 1.07997 * 119.97442 * 180.23711 * 16 15 14 47 47 H 1.08999 * 109.47171 * 125.01997 * 18 17 16 48 48 H 0.96699 * 113.99537 * 59.99910 * 19 18 17 49 49 H 1.07995 * 119.97067 * 179.97438 * 24 17 16 50 50 H 1.07996 * 120.02943 * 179.97438 * 25 24 17 51 51 H 1.09000 * 109.63462 * 202.69778 * 26 8 7 52 52 H 1.08995 * 109.64291 * 82.07444 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 6 6.0292 -4.2557 -2.1624 13 8 7.3823 -4.6452 -1.9187 14 6 7.7799 -5.8427 -2.4234 15 6 6.8847 -6.6293 -3.1336 16 6 7.2928 -7.8438 -3.6502 17 6 8.5896 -8.2803 -3.4509 18 6 9.0307 -9.6082 -4.0106 19 8 9.3456 -10.4969 -2.9367 20 14 7.6569 -10.3367 -5.0369 21 1 7.3296 -9.4133 -6.1528 22 1 8.0913 -11.6455 -5.5879 23 1 6.4547 -10.5323 -4.1874 24 6 9.4822 -7.5009 -2.7386 25 6 9.0804 -6.2832 -2.2245 26 6 2.4839 -0.8729 -1.5417 27 1 -0.3633 0.5214 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 -0.3634 -1.0276 0.0087 30 1 3.5499 1.7709 0.1759 31 1 2.2592 2.2192 -0.9648 32 1 1.9713 2.3192 0.7889 33 1 2.4568 -1.9390 1.3586 34 1 1.8275 -0.6114 2.3613 35 1 4.1880 -0.7692 2.8354 36 1 3.9678 0.6715 1.8238 37 1 5.8869 -0.7284 1.2192 38 1 4.7652 -2.0367 0.8320 39 1 4.2908 0.5826 -0.5119 40 1 5.7174 -0.3573 -1.0178 41 1 6.4424 -2.1518 -1.9556 42 1 5.9408 -2.9539 -0.4479 43 1 5.3552 -4.9947 -1.7295 44 1 5.8569 -4.1920 -3.2368 45 1 5.8707 -6.2904 -3.2863 46 1 6.5973 -8.4548 -4.2063 47 1 9.9131 -9.4647 -4.6342 48 1 8.6049 -10.6706 -2.3400 49 1 10.4944 -7.8443 -2.5840 50 1 9.7779 -5.6749 -1.6678 51 1 1.8612 -1.7441 -1.7452 52 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4549602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:33:04 Heat of formation + Delta-G solvation = -109.098094 kcal Electronic energy + Delta-G solvation = -28968.493104 eV Core-core repulsion = 25057.143292 eV Total energy + Delta-G solvation = -3911.349812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.51092 -40.99873 -39.21509 -38.13461 -37.18323 -34.89060 -33.48512 -32.10562 -31.50635 -29.95589 -29.21836 -28.39256 -27.73761 -26.33134 -25.61767 -24.83342 -23.35795 -22.22379 -21.55668 -20.20038 -19.40747 -18.42997 -17.85686 -17.50580 -17.30809 -17.01473 -16.54592 -16.47659 -16.02412 -15.74049 -15.60858 -15.29534 -15.11949 -14.74513 -14.55155 -14.45043 -14.43952 -14.11631 -13.92439 -13.74775 -13.69982 -13.60654 -13.44839 -13.31845 -13.20392 -12.91684 -12.80147 -12.75969 -12.48807 -12.28207 -12.16614 -12.05325 -11.85939 -11.66974 -11.56793 -11.42551 -11.17578 -10.85210 -10.77338 -10.41345 -10.39766 -10.07389 -9.49429 -9.25179 0.24205 0.27167 1.17574 1.42069 1.42261 1.49890 1.55016 1.70515 1.88829 1.92214 1.95394 2.40756 2.57527 2.62625 3.46671 3.56360 3.63883 3.77150 3.79926 3.81412 3.84776 3.93287 4.10074 4.15250 4.19654 4.27509 4.38895 4.47801 4.50655 4.55152 4.58375 4.64357 4.67869 4.74305 4.75559 4.77367 4.84777 4.86101 4.90434 4.93864 4.96229 5.02283 5.11915 5.14836 5.24627 5.31350 5.43140 5.45896 5.46526 5.51449 5.58942 5.69643 5.75640 6.26821 6.32961 6.70461 7.06121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.468 4.468 2 Si 1.081 2.919 3 C -0.458 4.458 4 C -0.423 4.423 5 C -0.109 4.109 6 C -0.148 4.148 7 C 0.070 3.930 8 N -0.586 5.586 9 C 0.512 3.488 10 O -0.591 6.591 11 C -0.134 4.134 12 C 0.075 3.925 13 O -0.319 6.319 14 C 0.122 3.878 15 C -0.213 4.213 16 C -0.094 4.094 17 C -0.160 4.160 18 C -0.069 4.069 19 O -0.552 6.552 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.053 4.053 25 C -0.155 4.155 26 C -0.207 4.207 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.133 0.867 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.388 0.612 49 H 0.149 0.851 50 H 0.146 0.854 51 H 0.069 0.931 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 6.149 3.710 7.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.270 2.730 3 C -0.566 4.566 4 C -0.508 4.508 5 C -0.147 4.147 6 C -0.187 4.187 7 C -0.051 4.051 8 N -0.317 5.317 9 C 0.301 3.699 10 O -0.472 6.472 11 C -0.173 4.173 12 C -0.001 4.001 13 O -0.232 6.232 14 C 0.076 3.924 15 C -0.232 4.232 16 C -0.111 4.111 17 C -0.161 4.161 18 C -0.180 4.180 19 O -0.359 6.359 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.071 4.071 25 C -0.174 4.174 26 C -0.371 4.371 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.144 0.856 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.237 0.763 49 H 0.167 0.833 50 H 0.164 0.836 51 H 0.088 0.912 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.532 5.524 2.676 6.161 hybrid contribution -0.865 -0.219 0.111 0.899 sum -0.334 5.306 2.787 6.002 Atomic orbital electron populations 1.26320 1.21789 1.04288 1.05045 0.78452 0.65319 0.66240 0.62944 1.26489 1.06888 1.17806 1.05432 1.26420 1.01702 1.06910 1.15803 1.20282 0.93195 1.02187 0.99008 1.20885 1.01804 1.01274 0.94698 1.21971 0.96792 0.95066 0.91316 1.47782 1.12378 1.18545 1.53009 1.20659 0.89584 0.81411 0.78250 1.90696 1.60049 1.53770 1.42709 1.21566 0.93488 0.96905 1.05339 1.22415 0.80426 0.96454 1.00768 1.85956 1.30408 1.33800 1.73081 1.19208 0.94153 0.85099 0.93890 1.21361 1.00622 0.97129 1.04069 1.21011 0.95812 0.95843 0.98483 1.20350 0.94098 0.98683 1.02976 1.24867 1.10245 0.88016 0.94886 1.86480 1.42138 1.65456 1.41785 0.85320 0.76796 0.79042 0.78727 1.18629 1.19773 1.18059 1.21038 1.00249 0.91832 0.93970 1.20732 0.93808 0.98163 1.04685 1.27566 0.85226 1.06644 1.17713 0.90346 0.90943 0.91980 0.89404 0.90652 0.90094 0.92304 0.90000 0.91976 0.89879 0.88928 0.92650 0.86380 0.88063 0.85568 0.85746 0.91967 0.91925 0.84946 0.85279 0.85498 0.76305 0.83303 0.83601 0.91189 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.80 8.65 113.37 0.98 2.78 16 2 Si 1.08 -7.60 10.32 68.60 0.71 -6.89 16 3 C -0.46 4.09 7.85 113.37 0.89 4.98 16 4 C -0.42 2.10 4.74 72.44 0.34 2.44 16 5 C -0.11 0.76 5.27 29.15 0.15 0.91 16 6 C -0.15 1.11 4.63 28.36 0.13 1.25 16 7 C 0.07 -0.52 5.02 86.33 0.43 -0.09 16 8 N -0.59 0.33 2.61 -629.34 -1.64 -1.31 16 9 C 0.51 2.37 7.28 87.66 0.64 3.01 16 10 O -0.59 -8.14 15.61 -3.03 -0.05 -8.19 16 11 C -0.13 0.13 4.75 29.85 0.14 0.27 16 12 C 0.07 0.27 4.03 71.98 0.29 0.56 16 13 O -0.32 -1.58 10.14 -92.39 -0.94 -2.52 16 14 C 0.12 0.70 6.69 22.51 0.15 0.85 16 15 C -0.21 -1.18 9.04 22.37 0.20 -0.98 16 16 C -0.09 -0.37 8.66 22.26 0.19 -0.17 16 17 C -0.16 -0.39 5.35 -19.85 -0.11 -0.50 16 18 C -0.07 0.00 2.80 71.24 0.20 0.19 16 19 O -0.55 -0.62 12.83 -148.98 -1.91 -2.53 16 20 Si 0.98 0.64 25.14 68.60 1.72 2.36 16 21 H -0.26 -0.63 7.11 99.48 0.71 0.08 16 22 H -0.27 -1.00 7.11 99.48 0.71 -0.29 16 23 H -0.26 -0.28 7.04 99.48 0.70 0.42 16 24 C -0.05 -0.11 9.68 22.25 0.22 0.11 16 25 C -0.16 -0.52 9.99 22.37 0.22 -0.29 16 26 C -0.21 0.13 5.35 127.42 0.68 0.81 16 27 H 0.08 -0.37 7.96 -2.38 -0.02 -0.39 16 28 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 29 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.09 -0.96 4.86 -2.39 -0.01 -0.97 16 31 H 0.07 -0.65 7.96 -2.39 -0.02 -0.67 16 32 H 0.08 -0.73 7.96 -2.39 -0.02 -0.74 16 33 H 0.06 -0.08 7.91 -2.38 -0.02 -0.10 16 34 H 0.08 -0.45 7.95 -2.39 -0.02 -0.47 16 35 H 0.06 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.08 -0.83 6.34 -2.39 -0.02 -0.85 16 37 H 0.09 -0.98 8.14 -2.39 -0.02 -0.99 16 38 H 0.05 -0.24 6.19 -2.39 -0.01 -0.26 16 39 H 0.12 -1.24 3.48 -2.39 -0.01 -1.25 16 40 H 0.10 -1.08 7.14 -2.39 -0.02 -1.09 16 41 H 0.13 -0.64 7.57 -2.39 -0.02 -0.66 16 42 H 0.12 -0.54 6.38 -2.39 -0.02 -0.55 16 43 H 0.06 0.33 7.61 -2.39 -0.02 0.31 16 44 H 0.06 0.33 7.63 -2.39 -0.02 0.31 16 45 H 0.13 0.63 6.30 -2.91 -0.02 0.61 16 46 H 0.13 0.21 4.86 -2.91 -0.01 0.20 16 47 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 48 H 0.39 -1.85 8.70 -74.06 -0.64 -2.50 16 49 H 0.15 -0.17 8.06 -2.91 -0.02 -0.20 16 50 H 0.15 0.03 8.06 -2.91 -0.02 0.00 16 51 H 0.07 0.32 7.21 -2.39 -0.02 0.30 16 52 H 0.07 -0.13 7.98 -2.39 -0.02 -0.15 16 Total: 0.00 -18.63 395.95 4.68 -13.95 By element: Atomic # 1 Polarization: -12.02 SS G_CDS: 1.03 Total: -11.00 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 5.76 Total: 16.12 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: -1.64 Total: -1.31 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -2.90 Total: -13.24 kcal Atomic # 14 Polarization: -6.96 SS G_CDS: 2.43 Total: -4.53 kcal Total: -18.63 4.68 -13.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.153 kcal (2) G-P(sol) polarization free energy of solvation -18.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds