Wall clock time and date at job start Sun Mar 7 2021 14:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86299 * 109.15217 * 2 1 4 4 C 1.85243 * 109.31127 * 119.51582 * 2 1 3 5 5 C 1.54349 * 110.16852 * 202.01454 * 4 2 1 6 6 C 1.46874 * 111.74880 * 289.11738 * 5 4 2 7 7 C 1.51988 * 115.05170 * 66.57007 * 6 5 4 8 8 N 1.44987 * 108.86317 * 266.67981 * 7 6 5 9 9 C 1.34770 * 121.39526 * 283.26418 * 8 7 6 10 10 O 1.21280 * 120.00473 * 179.97438 * 9 8 7 11 11 C 1.50703 * 119.99785 * 359.97438 * 9 8 7 12 12 C 1.53000 * 109.47184 * 180.02562 * 11 9 8 13 13 O 1.42904 * 109.46984 * 180.02562 * 12 11 9 14 14 C 1.35897 * 116.99599 * 179.97438 * 13 12 11 15 15 C 1.38707 * 120.06229 * 359.72473 * 14 13 12 16 16 C 1.38170 * 119.94919 * 179.72260 * 15 14 13 17 17 C 1.38239 * 120.05032 * 0.57153 * 16 15 14 18 18 C 1.38291 * 120.11682 * 359.67979 * 17 16 15 19 19 C 1.50692 * 119.97514 * 180.02562 * 18 17 16 20 20 O 1.42903 * 109.47322 * 245.02200 * 19 18 17 21 21 Si 1.86299 * 109.47275 * 5.02149 * 19 18 17 22 22 H 1.48499 * 109.46983 * 300.00051 * 21 19 18 23 23 H 1.48497 * 109.47152 * 60.00111 * 21 19 18 24 24 H 1.48506 * 109.47445 * 180.02562 * 21 19 18 25 25 C 1.38126 * 120.04998 * 0.04426 * 18 17 16 26 26 C 1.48297 * 117.35706 * 103.24562 * 8 7 6 27 27 H 1.09004 * 109.46900 * 300.48393 * 1 2 3 28 28 H 1.09001 * 109.47149 * 60.47728 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.48292 * 1 2 3 30 30 H 1.09000 * 109.47106 * 170.14457 * 3 2 1 31 31 H 1.09001 * 109.47427 * 290.14070 * 3 2 1 32 32 H 1.09003 * 109.47308 * 50.13985 * 3 2 1 33 33 H 1.09009 * 109.35034 * 81.80743 * 4 2 1 34 34 H 1.08998 * 109.24468 * 322.16034 * 4 2 1 35 35 H 1.08999 * 109.02641 * 168.53537 * 5 4 2 36 36 H 1.08996 * 109.02750 * 49.70629 * 5 4 2 37 37 H 1.09003 * 108.34363 * 187.95899 * 6 5 4 38 38 H 1.09001 * 108.34355 * 305.17882 * 6 5 4 39 39 H 1.08998 * 109.55543 * 26.66774 * 7 6 5 40 40 H 1.08999 * 109.55392 * 146.96832 * 7 6 5 41 41 H 1.09001 * 109.47180 * 299.99851 * 11 9 8 42 42 H 1.08999 * 109.47305 * 59.99472 * 11 9 8 43 43 H 1.08996 * 109.46864 * 299.99496 * 12 11 9 44 44 H 1.08994 * 109.47471 * 59.99991 * 12 11 9 45 45 H 1.08000 * 120.02330 * 359.97438 * 15 14 13 46 46 H 1.08000 * 119.97483 * 180.27558 * 16 15 14 47 47 H 1.08004 * 119.94380 * 179.69968 * 17 16 15 48 48 H 1.09002 * 109.47397 * 125.02654 * 19 18 17 49 49 H 0.96694 * 114.00368 * 179.97438 * 20 19 18 50 50 H 1.08002 * 120.02340 * 179.97438 * 25 18 17 51 51 H 1.09000 * 109.63462 * 202.69778 * 26 8 7 52 52 H 1.08995 * 109.64291 * 82.07444 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4743 1.7599 0.0000 4 6 2.4757 -0.8613 1.5213 5 6 3.9193 -0.4173 1.8394 6 6 4.8804 -0.9534 0.8667 7 6 4.7363 -0.4117 -0.5460 8 7 3.8829 -1.3043 -1.3056 9 6 4.3411 -2.4801 -1.7787 10 8 3.6051 -3.2078 -2.4108 11 6 5.7683 -2.8907 -1.5223 12 6 6.0292 -4.2557 -2.1624 13 8 7.3823 -4.6452 -1.9187 14 6 7.7799 -5.8427 -2.4234 15 6 6.8848 -6.6292 -3.1335 16 6 7.2932 -7.8437 -3.6506 17 6 8.5894 -8.2805 -3.4505 18 6 9.4824 -7.5008 -2.7385 19 6 10.8948 -7.9798 -2.5229 20 8 11.1133 -8.2067 -1.1290 21 14 11.1618 -9.5678 -3.4598 22 1 10.2098 -10.5972 -2.9707 23 1 10.9348 -9.3321 -4.9083 24 1 12.5535 -10.0402 -3.2469 25 6 9.0806 -6.2833 -2.2245 26 6 2.4839 -0.8729 -1.5417 27 1 -0.3633 0.5214 0.8857 28 1 -0.3633 0.5064 -0.8942 29 1 -0.3634 -1.0276 0.0087 30 1 3.5499 1.7709 0.1759 31 1 2.2592 2.2192 -0.9648 32 1 1.9713 2.3192 0.7889 33 1 2.4568 -1.9390 1.3586 34 1 1.8275 -0.6114 2.3613 35 1 4.1880 -0.7692 2.8354 36 1 3.9678 0.6715 1.8238 37 1 5.8869 -0.7284 1.2192 38 1 4.7652 -2.0367 0.8320 39 1 4.2908 0.5826 -0.5119 40 1 5.7174 -0.3573 -1.0178 41 1 6.4424 -2.1518 -1.9556 42 1 5.9408 -2.9539 -0.4479 43 1 5.3552 -4.9947 -1.7295 44 1 5.8569 -4.1920 -3.2368 45 1 5.8706 -6.2906 -3.2856 46 1 6.5978 -8.4543 -4.2073 47 1 8.9054 -9.2324 -3.8513 48 1 11.5936 -7.2242 -2.8818 49 1 12.0037 -8.5178 -0.9160 50 1 9.7782 -5.6748 -1.6682 51 1 1.8612 -1.7441 -1.7452 52 1 2.4496 -0.1883 -2.3892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4549614.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:33:20 Heat of formation + Delta-G solvation = -107.760033 kcal Electronic energy + Delta-G solvation = -28991.818391 eV Core-core repulsion = 25080.526602 eV Total energy + Delta-G solvation = -3911.291789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.182 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.50319 -40.98811 -39.10267 -38.12676 -37.32586 -34.88777 -33.43739 -32.61991 -31.00630 -29.92663 -29.21166 -28.37725 -27.69409 -26.83890 -25.57113 -24.42401 -23.72160 -21.98634 -21.50079 -20.14895 -19.07342 -18.47256 -18.05073 -17.54289 -17.47708 -17.15060 -16.94401 -16.50291 -15.87275 -15.73378 -15.56640 -15.32210 -14.87981 -14.71109 -14.56438 -14.52579 -14.23435 -14.09592 -13.92744 -13.75252 -13.71028 -13.50250 -13.41633 -13.32209 -13.19746 -12.96805 -12.87992 -12.76757 -12.49125 -12.37967 -12.11553 -11.90913 -11.86785 -11.67309 -11.65084 -11.42701 -11.17191 -10.84750 -10.76771 -10.41041 -10.37612 -9.93539 -9.48934 -9.31633 0.15640 0.33822 1.14875 1.42578 1.47272 1.52476 1.55763 1.71107 1.90329 1.92849 1.97108 2.40856 2.58030 2.59444 3.43518 3.47824 3.71004 3.80537 3.83059 3.83856 3.89163 4.01834 4.10102 4.15380 4.19931 4.21844 4.29470 4.46312 4.48047 4.51041 4.55354 4.60124 4.68155 4.71618 4.76269 4.78088 4.85185 4.86703 4.90463 4.93983 4.96861 5.02610 5.11908 5.19924 5.31380 5.31968 5.40057 5.43439 5.46157 5.51867 5.59494 5.64194 5.76066 6.27690 6.33297 6.82247 7.06502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.467 4.467 2 Si 1.081 2.919 3 C -0.458 4.458 4 C -0.423 4.423 5 C -0.109 4.109 6 C -0.149 4.149 7 C 0.071 3.929 8 N -0.586 5.586 9 C 0.512 3.488 10 O -0.590 6.590 11 C -0.134 4.134 12 C 0.075 3.925 13 O -0.320 6.320 14 C 0.118 3.882 15 C -0.213 4.213 16 C -0.077 4.077 17 C -0.173 4.173 18 C -0.049 4.049 19 C -0.085 4.085 20 O -0.562 6.562 21 Si 0.984 3.016 22 H -0.271 1.271 23 H -0.258 1.258 24 H -0.252 1.252 25 C -0.135 4.135 26 C -0.207 4.207 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.136 0.864 46 H 0.150 0.850 47 H 0.133 0.867 48 H 0.098 0.902 49 H 0.399 0.601 50 H 0.138 0.862 51 H 0.069 0.931 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.710 5.377 2.270 6.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.574 4.574 2 Si 1.271 2.729 3 C -0.566 4.566 4 C -0.509 4.509 5 C -0.147 4.147 6 C -0.187 4.187 7 C -0.051 4.051 8 N -0.317 5.317 9 C 0.302 3.698 10 O -0.472 6.472 11 C -0.173 4.173 12 C 0.000 4.000 13 O -0.234 6.234 14 C 0.073 3.927 15 C -0.232 4.232 16 C -0.095 4.095 17 C -0.191 4.191 18 C -0.049 4.049 19 C -0.195 4.195 20 O -0.371 6.371 21 Si 0.808 3.192 22 H -0.196 1.196 23 H -0.182 1.182 24 H -0.176 1.176 25 C -0.154 4.154 26 C -0.371 4.371 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.150 0.850 48 H 0.116 0.884 49 H 0.250 0.750 50 H 0.156 0.844 51 H 0.088 0.912 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.988 4.530 1.603 5.200 hybrid contribution -0.157 -0.269 -0.069 0.319 sum 1.831 4.261 1.534 4.884 Atomic orbital electron populations 1.26313 1.21725 1.04291 1.05064 0.78450 0.65357 0.66245 0.62888 1.26484 1.06873 1.17769 1.05459 1.26432 1.01679 1.06905 1.15882 1.20281 0.93209 1.02198 0.98967 1.20888 1.01796 1.01248 0.94768 1.21967 0.96801 0.95079 0.91269 1.47778 1.12400 1.18529 1.53007 1.20632 0.89526 0.81421 0.78259 1.90695 1.60014 1.53747 1.42695 1.21566 0.93581 0.96909 1.05272 1.22420 0.80316 0.96417 1.00851 1.85948 1.30529 1.33725 1.73188 1.19143 0.93968 0.85372 0.94257 1.21519 1.00544 0.97388 1.03730 1.21172 0.95910 0.95086 0.97299 1.21164 0.94477 1.00581 1.02854 1.19363 0.95228 0.93570 0.96720 1.24850 0.95097 1.10418 0.89100 1.86469 1.38740 1.90050 1.21891 0.85204 0.79952 0.75667 0.78345 1.19560 1.18190 1.17598 1.20361 0.93965 0.97467 1.03570 1.27570 0.85182 1.06661 1.17735 0.90339 0.90901 0.91987 0.89424 0.90607 0.90077 0.92360 0.89997 0.92032 0.89828 0.88981 0.92729 0.86314 0.88089 0.85547 0.85890 0.92035 0.91726 0.84616 0.83235 0.84953 0.88404 0.75022 0.84420 0.91173 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.68 8.65 113.37 0.98 2.66 16 2 Si 1.08 -7.19 10.32 68.60 0.71 -6.48 16 3 C -0.46 3.96 7.85 113.37 0.89 4.85 16 4 C -0.42 1.86 4.74 72.44 0.34 2.20 16 5 C -0.11 0.68 5.27 29.15 0.15 0.84 16 6 C -0.15 1.00 4.63 28.36 0.13 1.13 16 7 C 0.07 -0.48 5.02 86.33 0.43 -0.05 16 8 N -0.59 -0.01 2.61 -629.34 -1.64 -1.65 16 9 C 0.51 2.75 7.28 87.66 0.64 3.38 16 10 O -0.59 -8.48 15.61 -3.03 -0.05 -8.53 16 11 C -0.13 -0.02 4.75 29.85 0.14 0.12 16 12 C 0.08 0.37 4.03 71.98 0.29 0.66 16 13 O -0.32 -2.25 10.14 -92.39 -0.94 -3.19 16 14 C 0.12 0.98 6.69 22.51 0.15 1.13 16 15 C -0.21 -1.47 9.04 22.37 0.20 -1.27 16 16 C -0.08 -0.38 10.04 22.25 0.22 -0.16 16 17 C -0.17 -0.93 8.67 22.28 0.19 -0.74 16 18 C -0.05 -0.28 5.38 -19.88 -0.11 -0.39 16 19 C -0.09 -0.05 2.79 71.23 0.20 0.15 16 20 O -0.56 -0.81 12.81 -148.98 -1.91 -2.72 16 21 Si 0.98 -0.43 25.14 68.60 1.72 1.29 16 22 H -0.27 -0.87 7.04 99.48 0.70 -0.17 16 23 H -0.26 -0.21 7.11 99.48 0.71 0.50 16 24 H -0.25 0.36 7.11 99.48 0.71 1.06 16 25 C -0.13 -1.00 9.62 22.37 0.22 -0.79 16 26 C -0.21 0.05 5.35 127.42 0.68 0.73 16 27 H 0.08 -0.35 7.96 -2.38 -0.02 -0.37 16 28 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 29 H 0.06 -0.10 7.96 -2.39 -0.02 -0.12 16 30 H 0.09 -0.93 4.86 -2.39 -0.01 -0.94 16 31 H 0.07 -0.64 7.96 -2.39 -0.02 -0.65 16 32 H 0.08 -0.71 7.96 -2.39 -0.02 -0.73 16 33 H 0.06 -0.04 7.91 -2.38 -0.02 -0.06 16 34 H 0.08 -0.41 7.95 -2.39 -0.02 -0.43 16 35 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 36 H 0.08 -0.79 6.34 -2.39 -0.02 -0.81 16 37 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.05 -0.19 6.19 -2.39 -0.01 -0.20 16 39 H 0.12 -1.20 3.48 -2.39 -0.01 -1.20 16 40 H 0.10 -1.00 7.14 -2.39 -0.02 -1.02 16 41 H 0.13 -0.52 7.57 -2.39 -0.02 -0.54 16 42 H 0.12 -0.36 6.38 -2.39 -0.02 -0.38 16 43 H 0.06 0.41 7.61 -2.39 -0.02 0.39 16 44 H 0.06 0.39 7.63 -2.39 -0.02 0.37 16 45 H 0.14 0.73 6.30 -2.91 -0.02 0.71 16 46 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 47 H 0.13 0.31 4.86 -2.91 -0.01 0.29 16 48 H 0.10 -0.36 7.96 -2.39 -0.02 -0.38 16 49 H 0.40 -3.26 8.74 -74.06 -0.65 -3.91 16 50 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 51 H 0.07 0.34 7.21 -2.39 -0.02 0.33 16 52 H 0.08 -0.11 7.98 -2.39 -0.02 -0.13 16 Total: 0.00 -20.68 395.99 4.68 -16.00 By element: Atomic # 1 Polarization: -10.19 SS G_CDS: 1.02 Total: -9.16 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 5.76 Total: 14.46 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -1.64 Total: -1.65 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -2.89 Total: -14.45 kcal Atomic # 14 Polarization: -7.63 SS G_CDS: 2.43 Total: -5.19 kcal Total: -20.68 4.68 -16.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4549614.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.760 kcal (2) G-P(sol) polarization free energy of solvation -20.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds