Wall clock time and date at job start Sun Mar 7 2021 14:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86301 * 109.14895 * 2 1 4 4 C 1.85244 * 109.31181 * 119.51290 * 2 1 3 5 5 C 1.54353 * 110.17242 * 202.02829 * 4 2 1 6 6 C 1.46874 * 111.74641 * 289.11707 * 5 4 2 7 7 C 1.51995 * 115.18305 * 66.46127 * 6 5 4 8 8 N 1.44761 * 108.99535 * 266.91260 * 7 6 5 9 9 C 1.34778 * 121.25650 * 283.04412 * 8 7 6 10 10 O 1.21283 * 120.00125 * 179.97438 * 9 8 7 11 11 C 1.50705 * 119.99803 * 0.02562 * 9 8 7 12 12 O 1.42894 * 109.47115 * 180.02562 * 11 9 8 13 13 C 1.35902 * 117.00138 * 180.02562 * 12 11 9 14 14 C 1.38714 * 120.05468 * 359.95034 * 13 12 11 15 15 C 1.38166 * 119.94354 * 180.02562 * 14 13 12 16 16 C 1.38246 * 120.05572 * 0.04812 * 15 14 13 17 17 C 1.38293 * 120.10978 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.96727 * 179.97438 * 17 16 15 19 19 O 1.42904 * 109.47028 * 120.01881 * 18 17 16 20 20 Si 1.86301 * 109.47388 * 0.02562 * 18 17 16 21 21 H 1.48498 * 109.46777 * 60.00101 * 20 18 17 22 22 H 1.48499 * 109.46969 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47196 * 300.00172 * 20 18 17 24 24 C 1.38115 * 120.05830 * 359.97438 * 17 16 15 25 25 C 1.48292 * 117.49258 * 103.31741 * 8 7 6 26 26 H 1.08999 * 109.47214 * 300.48310 * 1 2 3 27 27 H 1.08995 * 109.46992 * 60.48793 * 1 2 3 28 28 H 1.09003 * 109.46930 * 180.48200 * 1 2 3 29 29 H 1.09005 * 109.46795 * 170.28568 * 3 2 1 30 30 H 1.08997 * 109.47278 * 290.27613 * 3 2 1 31 31 H 1.08996 * 109.47823 * 50.28135 * 3 2 1 32 32 H 1.08998 * 109.35655 * 81.81360 * 4 2 1 33 33 H 1.09004 * 109.23905 * 322.17004 * 4 2 1 34 34 H 1.09001 * 109.02603 * 168.52737 * 5 4 2 35 35 H 1.09000 * 109.02278 * 49.69951 * 5 4 2 36 36 H 1.09008 * 108.33758 * 304.98519 * 6 5 4 37 37 H 1.09000 * 108.19957 * 187.83838 * 6 5 4 38 38 H 1.09002 * 109.54970 * 147.06504 * 7 6 5 39 39 H 1.08996 * 109.55102 * 26.76611 * 7 6 5 40 40 H 1.08998 * 109.47440 * 59.99441 * 11 9 8 41 41 H 1.09000 * 109.47064 * 299.99968 * 11 9 8 42 42 H 1.08001 * 120.02315 * 0.04911 * 14 13 12 43 43 H 1.07995 * 119.97082 * 180.02562 * 15 14 13 44 44 H 1.07998 * 119.94234 * 179.97438 * 16 15 14 45 45 H 1.09004 * 109.47016 * 240.01568 * 18 17 16 46 46 H 0.96702 * 114.00144 * 299.99734 * 19 18 17 47 47 H 1.08000 * 120.03082 * 179.72893 * 24 17 16 48 48 H 1.08999 * 109.63853 * 81.82134 * 25 8 7 49 49 H 1.09004 * 109.64036 * 202.44859 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4742 1.7599 0.0000 4 6 2.4757 -0.8612 1.5214 5 6 3.9192 -0.4170 1.8397 6 6 4.8805 -0.9529 0.8671 7 6 4.7375 -0.4150 -0.5473 8 7 3.8829 -1.3042 -1.3054 9 6 4.3417 -2.4797 -1.7792 10 8 3.6057 -3.2075 -2.4113 11 6 5.7688 -2.8901 -1.5224 12 8 6.0130 -4.1644 -2.1211 13 6 7.2614 -4.6830 -1.9810 14 6 8.2316 -3.9793 -1.2826 15 6 9.5001 -4.5083 -1.1420 16 6 9.8032 -5.7375 -1.6975 17 6 8.8378 -6.4408 -2.3946 18 6 9.1718 -7.7801 -2.9993 19 8 8.3196 -8.7813 -2.4395 20 14 10.9491 -8.2015 -2.6322 21 1 11.1508 -8.2579 -1.1621 22 1 11.2779 -9.5215 -3.2276 23 1 11.8347 -7.1610 -3.2138 24 6 7.5679 -5.9167 -2.5371 25 6 2.4856 -0.8703 -1.5465 26 1 -0.3633 0.5213 0.8856 27 1 -0.3633 0.5062 -0.8943 28 1 -0.3633 -1.0277 0.0086 29 1 3.5503 1.7708 0.1734 30 1 2.2569 2.2200 -0.9639 31 1 1.9731 2.3187 0.7904 32 1 2.4569 -1.9388 1.3588 33 1 1.8273 -0.6113 2.3612 34 1 4.1878 -0.7688 2.8358 35 1 3.9675 0.6719 1.8240 36 1 4.7677 -2.0367 0.8349 37 1 5.8859 -0.7246 1.2209 38 1 5.7189 -0.3627 -1.0186 39 1 4.2927 0.5796 -0.5161 40 1 5.9409 -2.9540 -0.4480 41 1 6.4429 -2.1508 -1.9549 42 1 7.9953 -3.0188 -0.8488 43 1 10.2557 -3.9611 -0.5980 44 1 10.7955 -6.1491 -1.5868 45 1 9.0235 -7.7387 -4.0784 46 1 8.3988 -8.8737 -1.4801 47 1 6.8156 -6.4643 -3.0853 48 1 2.4559 -0.1844 -2.3930 49 1 1.8624 -1.7403 -1.7538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4860298.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:40:50 Heat of formation + Delta-G solvation = -100.780526 kcal Electronic energy + Delta-G solvation = -27533.098942 eV Core-core repulsion = 23777.647425 eV Total energy + Delta-G solvation = -3755.451516 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.167 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.71167 -40.80614 -39.07776 -38.11332 -37.24330 -34.92834 -32.49504 -31.87019 -30.39412 -29.54292 -29.17593 -28.30890 -27.03894 -26.39990 -25.26886 -23.71950 -22.48129 -21.60455 -20.29551 -19.37462 -18.40051 -17.85592 -17.61833 -17.34377 -17.13653 -16.57742 -16.38561 -16.13101 -15.67904 -15.40771 -15.26455 -14.96734 -14.83481 -14.46324 -14.28987 -14.25840 -14.02200 -13.82378 -13.74073 -13.46833 -13.40703 -13.28435 -13.19601 -12.97566 -12.79277 -12.61674 -12.51859 -12.20716 -12.11287 -11.96506 -11.68532 -11.57340 -11.42070 -11.18453 -10.85877 -10.77525 -10.49701 -10.41698 -9.93389 -9.54780 -9.32132 0.17804 0.35008 1.14271 1.30506 1.39946 1.48570 1.53914 1.67055 1.90036 1.92973 1.95869 2.49273 2.56704 2.64129 3.32045 3.51554 3.66901 3.72704 3.83273 3.91013 3.93239 4.05313 4.10462 4.16418 4.19500 4.34799 4.45531 4.50149 4.54627 4.58256 4.63403 4.74892 4.77036 4.84360 4.85997 4.89374 4.95119 4.96157 5.01281 5.09208 5.21031 5.30699 5.32440 5.40010 5.41128 5.43886 5.51346 5.58247 5.66019 5.76299 6.18216 6.34643 6.67364 7.01036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.082 2.918 3 C -0.455 4.455 4 C -0.424 4.424 5 C -0.109 4.109 6 C -0.151 4.151 7 C 0.065 3.935 8 N -0.582 5.582 9 C 0.504 3.496 10 O -0.581 6.581 11 C 0.040 3.960 12 O -0.324 6.324 13 C 0.112 3.888 14 C -0.203 4.203 15 C -0.069 4.069 16 C -0.170 4.170 17 C -0.083 4.083 18 C -0.092 4.092 19 O -0.555 6.555 20 Si 0.999 3.001 21 H -0.246 1.246 22 H -0.278 1.278 23 H -0.251 1.251 24 C -0.146 4.146 25 C -0.207 4.207 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.138 0.862 45 H 0.118 0.882 46 H 0.389 0.611 47 H 0.116 0.884 48 H 0.077 0.923 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 8.405 6.338 11.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.576 4.576 2 Si 1.271 2.729 3 C -0.563 4.563 4 C -0.509 4.509 5 C -0.146 4.146 6 C -0.189 4.189 7 C -0.056 4.056 8 N -0.314 5.314 9 C 0.292 3.708 10 O -0.460 6.460 11 C -0.038 4.038 12 O -0.238 6.238 13 C 0.067 3.933 14 C -0.221 4.221 15 C -0.087 4.087 16 C -0.188 4.188 17 C -0.083 4.083 18 C -0.201 4.201 19 O -0.362 6.362 20 Si 0.821 3.179 21 H -0.169 1.169 22 H -0.204 1.204 23 H -0.175 1.175 24 C -0.165 4.165 25 C -0.371 4.371 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.177 0.823 43 H 0.179 0.821 44 H 0.156 0.844 45 H 0.136 0.864 46 H 0.238 0.762 47 H 0.134 0.866 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.967 7.615 5.429 10.589 hybrid contribution -0.926 -0.294 0.027 0.972 sum 4.041 7.321 5.455 9.985 Atomic orbital electron populations 1.26334 1.21916 1.04223 1.05104 0.78488 0.65306 0.66429 0.62670 1.26444 1.07007 1.17346 1.05553 1.26420 1.01997 1.06777 1.15754 1.20282 0.92952 1.02362 0.99036 1.20933 1.02331 1.01074 0.94585 1.22045 0.96835 0.95356 0.91403 1.47681 1.12741 1.17998 1.53028 1.20608 0.89297 0.81949 0.78938 1.90724 1.59607 1.53747 1.41949 1.22857 0.94389 0.85283 1.01260 1.86130 1.28911 1.35222 1.73487 1.19262 0.83787 0.93672 0.96541 1.21601 0.94027 1.02587 1.03917 1.21291 0.96167 0.94556 0.96686 1.21234 0.99500 0.97078 1.00960 1.20228 0.92980 0.97115 0.97991 1.25288 1.07752 0.85220 1.01871 1.86496 1.65679 1.56217 1.27852 0.84994 0.72619 0.79248 0.80996 1.16886 1.20390 1.17473 1.20300 0.97659 0.94534 1.03973 1.27716 0.84786 1.06457 1.18147 0.90203 0.90943 0.92155 0.89159 0.90587 0.89932 0.92537 0.89876 0.91770 0.89562 0.92955 0.88101 0.87636 0.85966 0.86147 0.85977 0.82309 0.82086 0.84443 0.86374 0.76184 0.86572 0.90450 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.63 8.65 113.37 0.98 2.61 16 2 Si 1.08 -7.59 10.34 68.60 0.71 -6.88 16 3 C -0.46 4.44 7.85 113.37 0.89 5.33 16 4 C -0.42 2.20 4.74 72.44 0.34 2.55 16 5 C -0.11 0.89 5.27 29.15 0.15 1.04 16 6 C -0.15 1.38 4.63 28.36 0.13 1.51 16 7 C 0.06 -0.56 5.00 86.37 0.43 -0.13 16 8 N -0.58 -0.13 2.60 -629.82 -1.64 -1.77 16 9 C 0.50 3.93 7.36 87.66 0.65 4.58 16 10 O -0.58 -11.48 16.13 16.00 0.26 -11.22 16 11 C 0.04 0.05 3.90 71.24 0.28 0.33 16 12 O -0.32 -3.26 9.67 -73.42 -0.71 -3.97 16 13 C 0.11 0.71 6.69 22.51 0.15 0.86 16 14 C -0.20 0.18 9.04 22.37 0.20 0.38 16 15 C -0.07 0.17 10.04 22.25 0.22 0.40 16 16 C -0.17 0.01 8.67 22.28 0.19 0.20 16 17 C -0.08 -0.28 5.39 -19.88 -0.11 -0.39 16 18 C -0.09 -0.15 2.82 71.24 0.20 0.05 16 19 O -0.56 -2.14 12.77 -148.98 -1.90 -4.04 16 20 Si 1.00 -1.09 25.07 68.60 1.72 0.63 16 21 H -0.25 0.52 7.11 99.48 0.71 1.22 16 22 H -0.28 -0.77 7.11 99.48 0.71 -0.07 16 23 H -0.25 0.28 7.11 99.48 0.71 0.98 16 24 C -0.15 -1.14 9.55 22.36 0.21 -0.93 16 25 C -0.21 -0.07 5.36 127.42 0.68 0.61 16 26 H 0.08 -0.37 7.96 -2.39 -0.02 -0.39 16 27 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 28 H 0.06 -0.06 7.96 -2.39 -0.02 -0.08 16 29 H 0.09 -1.11 4.87 -2.38 -0.01 -1.12 16 30 H 0.07 -0.71 7.96 -2.39 -0.02 -0.73 16 31 H 0.08 -0.82 7.96 -2.39 -0.02 -0.83 16 32 H 0.06 -0.06 7.91 -2.39 -0.02 -0.07 16 33 H 0.08 -0.48 7.95 -2.38 -0.02 -0.50 16 34 H 0.06 -0.46 8.14 -2.39 -0.02 -0.48 16 35 H 0.09 -1.00 6.35 -2.39 -0.02 -1.02 16 36 H 0.05 -0.28 6.20 -2.38 -0.01 -0.30 16 37 H 0.10 -1.38 8.14 -2.39 -0.02 -1.40 16 38 H 0.11 -1.37 7.12 -2.39 -0.02 -1.39 16 39 H 0.12 -1.46 3.50 -2.39 -0.01 -1.47 16 40 H 0.12 -0.57 5.90 -2.39 -0.01 -0.58 16 41 H 0.12 -0.68 7.08 -2.39 -0.02 -0.70 16 42 H 0.16 -1.24 6.30 -2.91 -0.02 -1.26 16 43 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 44 H 0.14 -0.49 4.88 -2.91 -0.01 -0.51 16 45 H 0.12 0.13 7.96 -2.39 -0.02 0.12 16 46 H 0.39 -1.20 8.70 -74.06 -0.64 -1.84 16 47 H 0.12 1.26 8.06 -2.91 -0.02 1.24 16 48 H 0.08 -0.08 7.99 -2.39 -0.02 -0.10 16 49 H 0.07 0.43 7.21 -2.38 -0.02 0.41 16 Total: 0.00 -25.95 374.97 5.12 -20.83 By element: Atomic # 1 Polarization: -13.66 SS G_CDS: 1.07 Total: -12.58 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 5.61 Total: 18.99 kcal Atomic # 7 Polarization: -0.13 SS G_CDS: -1.64 Total: -1.77 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -2.35 Total: -19.23 kcal Atomic # 14 Polarization: -8.67 SS G_CDS: 2.43 Total: -6.24 kcal Total: -25.95 5.12 -20.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4860298.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.950 kcal (2) G-P(sol) polarization free energy of solvation -25.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds