Wall clock time and date at job start Sun Mar 7 2021 14:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35895 * 117.00534 * 2 1 4 4 C 1.38751 * 120.02756 * 0.02562 * 3 2 1 5 5 C 1.38193 * 120.05727 * 180.02562 * 4 3 2 6 6 C 1.38150 * 120.10902 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.97581 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.47058 * 105.02060 * 7 6 5 9 9 Si 1.86303 * 109.47069 * 345.02363 * 7 6 5 10 10 H 1.48500 * 109.46992 * 59.99535 * 9 7 6 11 11 H 1.48499 * 109.47465 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47044 * 300.00261 * 9 7 6 13 13 C 1.38799 * 120.05785 * 0.02562 * 6 5 4 14 14 O 1.35889 * 120.03194 * 179.97438 * 13 6 5 15 15 C 1.42898 * 117.00470 * 179.97438 * 14 13 6 16 16 C 1.50693 * 109.47626 * 180.02562 * 15 14 13 17 17 O 1.21280 * 119.99966 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00374 * 179.97438 * 16 15 14 19 19 C 1.44757 * 121.25058 * 0.02562 * 18 16 15 20 20 C 1.51992 * 108.99080 * 283.04005 * 19 18 16 21 21 C 1.46876 * 115.18643 * 266.91199 * 20 19 18 22 22 C 1.54347 * 111.74588 * 66.46669 * 21 20 19 23 23 Si 1.85243 * 110.17009 * 289.11594 * 22 21 20 24 24 C 1.86306 * 109.31230 * 202.02358 * 23 22 21 25 25 C 1.86294 * 109.31535 * 321.44385 * 23 22 21 26 26 C 1.48290 * 121.25531 * 179.97438 * 18 16 15 27 27 C 1.38614 * 119.94059 * 0.23065 * 13 6 5 28 28 H 1.08997 * 109.47419 * 59.99523 * 1 2 3 29 29 H 1.08996 * 109.47677 * 180.02562 * 1 2 3 30 30 H 1.09012 * 109.46614 * 300.00073 * 1 2 3 31 31 H 1.08006 * 119.97148 * 0.02661 * 4 3 2 32 32 H 1.07999 * 119.94840 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.47501 * 225.02518 * 7 6 5 34 34 H 0.96693 * 113.99997 * 300.00129 * 8 7 6 35 35 H 1.08998 * 109.46680 * 59.99819 * 15 14 13 36 36 H 1.09006 * 109.47055 * 300.00597 * 15 14 13 37 37 H 1.08994 * 109.55639 * 163.18779 * 19 18 16 38 38 H 1.09006 * 109.55354 * 42.88899 * 19 18 16 39 39 H 1.09001 * 108.33923 * 28.39214 * 20 19 18 40 40 H 1.09001 * 108.34091 * 145.61146 * 20 19 18 41 41 H 1.09000 * 109.02422 * 187.05185 * 21 20 19 42 42 H 1.08997 * 109.02590 * 305.88344 * 21 20 19 43 43 H 1.09001 * 109.35140 * 49.33362 * 22 21 20 44 44 H 1.09002 * 109.35416 * 169.04255 * 22 21 20 45 45 H 1.08993 * 109.47095 * 60.00080 * 24 23 22 46 46 H 1.08997 * 109.47188 * 180.02562 * 24 23 22 47 47 H 1.09005 * 109.46824 * 300.00097 * 24 23 22 48 48 H 1.08999 * 109.47316 * 50.76306 * 25 23 22 49 49 H 1.08994 * 109.47780 * 170.76885 * 25 23 22 50 50 H 1.09008 * 109.46863 * 290.77026 * 25 23 22 51 51 H 1.09003 * 109.63623 * 22.71936 * 26 18 16 52 52 H 1.08995 * 109.63907 * 262.09661 * 26 18 16 53 53 H 1.07994 * 120.05580 * 179.75237 * 27 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2910 2.3749 0.0005 5 6 1.9178 3.6065 0.0000 6 6 3.2973 3.6820 -0.0016 7 6 3.9777 5.0266 -0.0028 8 8 4.5058 5.2943 1.2978 9 14 2.7436 6.3467 -0.4556 10 1 1.6382 6.3521 0.5360 11 1 3.4139 7.6718 -0.4562 12 1 2.1947 6.0685 -1.8071 13 6 4.0571 2.5204 -0.0032 14 8 5.4139 2.5953 -0.0053 15 6 6.1319 1.3598 -0.0063 16 6 7.6127 1.6393 -0.0080 17 8 8.0138 2.7839 -0.0078 18 7 8.4915 0.6174 -0.0087 19 6 8.0428 -0.7589 -0.0083 20 6 7.5822 -1.1286 1.3922 21 6 8.6063 -1.7474 2.2440 22 6 9.7433 -0.7595 2.5807 23 14 10.7729 -0.4337 1.0756 24 6 12.4540 0.1752 1.5991 25 6 10.9690 -2.0142 0.1091 26 6 9.9543 0.8605 -0.0109 27 6 3.4306 1.2839 -0.0081 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 0.2124 2.3184 0.0014 32 1 1.3284 4.5114 0.0000 33 1 4.7890 5.0227 -0.7306 34 1 3.8383 5.3129 1.9971 35 1 5.8688 0.7875 -0.8959 36 1 5.8715 0.7875 0.8841 37 1 8.8642 -1.4105 -0.3060 38 1 7.2136 -0.8725 -0.7068 39 1 7.2259 -0.2245 1.8859 40 1 6.7460 -1.8226 1.3062 41 1 8.1416 -2.0838 3.1708 42 1 9.0263 -2.6093 1.7255 43 1 9.3143 0.1778 2.9348 44 1 10.3732 -1.1862 3.3613 45 1 12.9388 -0.5816 2.2157 46 1 13.0620 0.3682 0.7152 47 1 12.3447 1.0957 2.1725 48 1 9.9900 -2.4659 -0.0513 49 1 11.4308 -1.7965 -0.8538 50 1 11.6009 -2.7053 0.6672 51 1 10.1610 1.8549 0.3848 52 1 10.3374 0.7807 -1.0282 53 1 4.0200 0.3790 -0.0134 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_4974312.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:41:19 Heat of formation + Delta-G solvation = -134.151629 kcal Electronic energy + Delta-G solvation = -32561.916030 eV Core-core repulsion = 28330.797623 eV Total energy + Delta-G solvation = -4231.118407 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 367.182 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.91916 -41.10059 -39.91911 -38.44439 -38.03896 -36.94586 -34.92616 -32.33691 -31.63002 -30.44462 -29.59456 -29.18175 -28.40817 -28.29389 -26.68441 -26.13154 -25.34136 -23.53990 -22.50140 -21.69282 -20.32154 -19.97176 -18.49839 -18.09130 -17.98146 -17.56231 -17.27660 -16.91847 -16.73277 -16.58975 -16.31129 -15.92090 -15.75237 -15.32070 -15.25794 -15.20245 -14.88183 -14.63950 -14.25357 -14.17991 -13.93787 -13.82709 -13.73927 -13.51574 -13.46822 -13.34915 -13.28676 -13.21020 -13.10923 -12.79472 -12.52795 -12.50862 -12.27367 -12.20511 -11.99922 -11.69817 -11.68080 -11.59936 -11.42763 -11.18688 -10.84988 -10.77217 -10.41743 -10.34182 -9.73478 -9.53970 -9.12835 0.16053 0.27041 1.15776 1.28288 1.40081 1.41280 1.51850 1.67702 1.90654 1.92452 1.93163 2.22710 2.49290 2.54011 2.57046 3.32906 3.58866 3.66828 3.73442 3.82857 3.88381 3.89267 4.03182 4.08809 4.13519 4.14968 4.31753 4.36575 4.40350 4.42524 4.45815 4.50309 4.57227 4.65269 4.75543 4.76969 4.77830 4.84133 4.85629 4.88449 4.95195 4.99450 5.00883 5.07693 5.19782 5.23209 5.29797 5.39159 5.42490 5.44873 5.51244 5.58643 5.75935 6.08892 6.26922 6.35879 6.77853 7.02452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.166 3.834 4 C -0.238 4.238 5 C -0.049 4.049 6 C -0.200 4.200 7 C -0.078 4.078 8 O -0.555 6.555 9 Si 0.992 3.008 10 H -0.230 1.230 11 H -0.280 1.280 12 H -0.251 1.251 13 C 0.176 3.824 14 O -0.302 6.302 15 C 0.036 3.964 16 C 0.506 3.494 17 O -0.574 6.574 18 N -0.582 5.582 19 C 0.066 3.934 20 C -0.151 4.151 21 C -0.108 4.108 22 C -0.424 4.424 23 Si 1.081 2.919 24 C -0.467 4.467 25 C -0.455 4.455 26 C -0.207 4.207 27 C -0.251 4.251 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.093 0.907 34 H 0.384 0.616 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.066 0.934 52 H 0.078 0.922 53 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.066 -8.928 -0.023 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.119 3.881 4 C -0.256 4.256 5 C -0.067 4.067 6 C -0.202 4.202 7 C -0.186 4.186 8 O -0.362 6.362 9 Si 0.814 3.186 10 H -0.153 1.153 11 H -0.205 1.205 12 H -0.175 1.175 13 C 0.130 3.870 14 O -0.215 6.215 15 C -0.041 4.041 16 C 0.294 3.706 17 O -0.453 6.453 18 N -0.315 5.315 19 C -0.055 4.055 20 C -0.189 4.189 21 C -0.146 4.146 22 C -0.510 4.510 23 Si 1.270 2.730 24 C -0.574 4.574 25 C -0.563 4.563 26 C -0.371 4.371 27 C -0.270 4.270 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.175 0.825 32 H 0.169 0.831 33 H 0.111 0.889 34 H 0.232 0.768 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.105 0.895 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.085 0.915 52 H 0.096 0.904 53 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.746 -7.650 -0.588 8.538 hybrid contribution -0.072 0.100 0.459 0.475 sum -3.818 -7.550 -0.130 8.461 Atomic orbital electron populations 1.23405 0.76014 1.05762 1.02628 1.86052 1.23724 1.26404 1.87912 1.18830 0.91565 0.84986 0.92682 1.21392 1.01625 0.91248 1.11372 1.20934 0.92114 0.98888 0.94718 1.19707 0.93482 0.94419 1.12543 1.25012 1.05968 0.99005 0.88653 1.86564 1.38915 1.93737 1.16985 0.85163 0.76559 0.75736 0.81124 1.15338 1.20520 1.17512 1.18604 0.81723 0.93246 0.93412 1.86227 1.15548 1.31644 1.88032 1.22865 0.88822 0.86354 1.06093 1.20493 0.88441 0.85069 0.76604 1.90734 1.80577 1.23082 1.50887 1.47651 1.05770 1.06131 1.71956 1.22012 1.04001 0.81195 0.98325 1.20929 1.00823 1.02043 0.95141 1.20273 0.95580 0.98627 1.00077 1.26433 1.06763 1.02309 1.15482 0.78478 0.64553 0.64839 0.65103 1.26312 1.18645 1.06350 1.06125 1.26439 1.05930 1.14972 1.08998 1.27680 0.83638 1.14485 1.11314 1.20554 0.93424 0.97390 1.15670 0.91361 0.86403 0.91364 0.82457 0.83108 0.88866 0.76759 0.86279 0.86619 0.85833 0.87970 0.93087 0.88510 0.91846 0.89497 0.92590 0.89805 0.90159 0.90859 0.92121 0.89267 0.90504 0.89863 0.91473 0.90388 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.41 10.49 -92.37 -0.97 -1.37 16 3 C 0.17 0.46 6.68 22.49 0.15 0.61 16 4 C -0.24 -0.11 9.04 22.38 0.20 0.10 16 5 C -0.05 -0.08 8.65 22.24 0.19 0.11 16 6 C -0.20 -1.27 5.27 -19.75 -0.10 -1.37 16 7 C -0.08 -0.57 2.38 71.24 0.17 -0.40 16 8 O -0.56 -5.33 12.88 -148.98 -1.92 -7.25 16 9 Si 0.99 2.20 25.49 68.60 1.75 3.95 16 10 H -0.23 0.36 6.73 99.48 0.67 1.03 16 11 H -0.28 -1.82 7.11 99.48 0.71 -1.11 16 12 H -0.25 -0.58 7.11 99.48 0.71 0.13 16 13 C 0.18 1.37 6.66 22.49 0.15 1.52 16 14 O -0.30 -3.46 8.99 -73.27 -0.66 -4.12 16 15 C 0.04 0.14 3.90 71.23 0.28 0.42 16 16 C 0.51 4.84 7.36 87.65 0.65 5.48 16 17 O -0.57 -12.05 16.13 16.01 0.26 -11.79 16 18 N -0.58 -1.13 2.61 -629.86 -1.64 -2.77 16 19 C 0.07 -0.42 5.01 86.37 0.43 0.01 16 20 C -0.15 0.99 4.63 28.36 0.13 1.12 16 21 C -0.11 0.68 5.27 29.15 0.15 0.83 16 22 C -0.42 1.59 4.74 72.44 0.34 1.94 16 23 Si 1.08 -6.35 10.33 68.60 0.71 -5.64 16 24 C -0.47 1.28 8.65 113.37 0.98 2.27 16 25 C -0.46 3.97 7.85 113.37 0.89 4.86 16 26 C -0.21 -0.32 5.35 127.42 0.68 0.36 16 27 C -0.25 -0.95 8.97 22.46 0.20 -0.75 16 28 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 29 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 30 H 0.07 -0.53 7.66 -2.38 -0.02 -0.54 16 31 H 0.16 -0.79 6.29 -2.91 -0.02 -0.81 16 32 H 0.15 -0.41 4.88 -2.91 -0.01 -0.42 16 33 H 0.09 1.02 7.82 -2.39 -0.02 1.00 16 34 H 0.38 0.37 8.70 -74.06 -0.64 -0.27 16 35 H 0.12 -0.28 7.06 -2.39 -0.02 -0.30 16 36 H 0.12 -0.11 5.91 -2.38 -0.01 -0.13 16 37 H 0.12 -1.25 3.50 -2.39 -0.01 -1.26 16 38 H 0.10 -1.04 7.12 -2.38 -0.02 -1.06 16 39 H 0.05 -0.13 6.20 -2.39 -0.01 -0.15 16 40 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 42 H 0.09 -0.87 6.35 -2.39 -0.02 -0.88 16 43 H 0.06 0.03 7.91 -2.39 -0.02 0.01 16 44 H 0.08 -0.39 7.95 -2.39 -0.02 -0.41 16 45 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 46 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 47 H 0.06 -0.02 7.96 -2.38 -0.02 -0.04 16 48 H 0.09 -0.98 4.87 -2.39 -0.01 -0.99 16 49 H 0.08 -0.65 7.96 -2.39 -0.02 -0.67 16 50 H 0.08 -0.75 7.96 -2.38 -0.02 -0.77 16 51 H 0.07 0.51 7.21 -2.39 -0.02 0.49 16 52 H 0.08 -0.01 7.98 -2.39 -0.02 -0.03 16 53 H 0.15 -0.10 6.30 -2.91 -0.02 -0.12 16 Total: 0.00 -26.89 403.68 5.14 -21.75 By element: Atomic # 1 Polarization: -11.89 SS G_CDS: 1.01 Total: -10.88 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 6.61 Total: 18.12 kcal Atomic # 7 Polarization: -1.13 SS G_CDS: -1.64 Total: -2.77 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -3.29 Total: -24.53 kcal Atomic # 14 Polarization: -4.14 SS G_CDS: 2.46 Total: -1.69 kcal Total: -26.89 5.14 -21.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_4974312.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.402 kcal (2) G-P(sol) polarization free energy of solvation -26.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds