Wall clock time and date at job start Sun Mar 7 2021 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37643 * 125.67551 * 2 1 4 4 C 1.46670 * 126.22468 * 0.02562 * 3 2 1 5 5 O 1.21705 * 120.00046 * 7.88201 * 4 3 2 6 6 N 1.34773 * 120.00253 * 187.88166 * 4 3 2 7 7 C 1.44763 * 121.25198 * 357.37059 * 6 4 3 8 8 C 1.51995 * 108.98925 * 283.04538 * 7 6 4 9 9 C 1.46875 * 115.18477 * 266.90870 * 8 7 6 10 10 C 1.54357 * 111.74691 * 66.46872 * 9 8 7 11 11 Si 1.85466 * 110.36114 * 289.11977 * 10 9 8 12 12 C 1.86299 * 109.20146 * 321.30247 * 11 10 9 13 13 C 1.86297 * 109.52253 * 201.82490 * 11 10 9 14 14 C 1.48286 * 121.25639 * 177.35391 * 6 4 3 15 15 C 1.37881 * 107.55103 * 180.26486 * 3 2 1 16 16 C 1.39882 * 107.09316 * 359.62107 * 15 3 2 17 17 Br 1.89094 * 126.07549 * 180.11260 * 16 15 3 18 18 C 1.35505 * 107.84670 * 0.38287 * 16 15 3 19 19 C 1.50702 * 125.56600 * 179.78222 * 18 16 15 20 20 O 1.42893 * 109.47388 * 306.99315 * 19 18 16 21 21 Si 1.86304 * 109.47258 * 66.99388 * 19 18 16 22 22 H 1.48504 * 109.46994 * 59.89259 * 21 19 18 23 23 H 1.48503 * 109.47162 * 179.88724 * 21 19 18 24 24 H 1.48491 * 109.46989 * 299.89119 * 21 19 18 25 25 H 1.09004 * 109.47275 * 84.39943 * 1 2 3 26 26 H 1.09000 * 109.47065 * 204.39550 * 1 2 3 27 27 H 1.08995 * 109.46953 * 324.40027 * 1 2 3 28 28 H 1.09003 * 109.54978 * 42.89361 * 7 6 4 29 29 H 1.08998 * 109.55400 * 163.19077 * 7 6 4 30 30 H 1.08995 * 108.33895 * 28.38398 * 8 7 6 31 31 H 1.08993 * 108.34057 * 145.60853 * 8 7 6 32 32 H 1.08996 * 109.02933 * 187.05121 * 9 8 7 33 33 H 1.09001 * 109.02289 * 305.88754 * 9 8 7 34 34 H 1.08992 * 109.35055 * 49.33115 * 10 9 8 35 35 H 1.08994 * 109.35278 * 169.04454 * 10 9 8 36 36 H 1.09001 * 109.47457 * 171.68798 * 12 11 10 37 37 H 1.09007 * 109.47247 * 291.68737 * 12 11 10 38 38 H 1.09000 * 109.47285 * 51.68174 * 12 11 10 39 39 H 1.09004 * 109.47053 * 299.02481 * 13 11 10 40 40 H 1.08997 * 109.47311 * 59.02285 * 13 11 10 41 41 H 1.09000 * 109.47161 * 179.02755 * 13 11 10 42 42 H 1.09002 * 109.63687 * 262.09204 * 14 6 4 43 43 H 1.08997 * 109.64117 * 22.49858 * 14 6 4 44 44 H 1.08005 * 126.45372 * 179.76224 * 15 3 2 45 45 H 1.09003 * 109.47223 * 186.99068 * 19 18 16 46 46 H 0.96693 * 114.00351 * 59.99911 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2677 1.1181 0.0000 4 6 1.8121 2.5122 0.0005 5 8 0.6307 2.7663 0.1456 6 7 2.7015 3.5120 -0.1596 7 6 4.1192 3.2442 -0.2779 8 6 4.6812 2.9370 1.1005 9 6 5.2361 4.0906 1.8206 10 6 4.1414 5.1134 2.1921 11 14 3.5312 5.9858 0.6734 12 6 4.9702 6.3174 -0.4625 13 6 2.7490 7.6057 1.1579 14 6 2.2649 4.9278 -0.2216 15 6 3.5781 0.6892 -0.0061 16 6 3.5530 -0.7094 -0.0009 17 35 5.0610 -1.8502 -0.0026 18 6 2.2559 -1.1014 -0.0006 19 6 1.7715 -2.5285 -0.0004 20 8 2.3857 -3.2402 -1.0765 21 14 2.2223 -3.3371 1.6164 22 1 1.5860 -2.5959 2.7349 23 1 1.7425 -4.7425 1.6176 24 1 3.6974 -3.3174 1.7852 25 1 -0.3634 0.1003 -1.0228 26 1 -0.3633 -0.9359 0.4245 27 1 -0.3633 0.8356 0.5982 28 1 4.2752 2.3882 -0.9344 29 1 4.6225 4.1186 -0.6904 30 1 3.8853 2.5048 1.7069 31 1 5.4697 2.1924 0.9913 32 1 5.7200 3.7411 2.7326 33 1 5.9794 4.5788 1.1903 34 1 3.3090 4.5948 2.6676 35 1 4.5530 5.8473 2.8849 36 1 4.6009 6.6945 -1.4162 37 1 5.6279 7.0589 -0.0088 38 1 5.5238 5.3930 -0.6270 39 1 1.9008 7.4171 1.8160 40 1 3.4822 8.2221 1.6778 41 1 2.4062 8.1255 0.2633 42 1 2.1933 5.2438 -1.2623 43 1 1.2931 5.0329 0.2608 44 1 4.4582 1.3152 -0.0113 45 1 0.6887 -2.5447 -0.1252 46 1 3.3512 -3.2666 -1.0302 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_5000100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:45:26 Heat of formation + Delta-G solvation = -13.594937 kcal Electronic energy + Delta-G solvation = -27555.777371 eV Core-core repulsion = 23845.770924 eV Total energy + Delta-G solvation = -3710.006447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 388.073 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.05575 -40.69996 -38.39917 -37.95499 -34.99205 -34.44814 -32.45537 -31.15533 -30.09930 -29.24875 -28.45790 -28.13495 -27.29717 -26.04132 -25.31029 -22.75938 -22.05277 -20.86130 -20.11104 -18.79356 -18.10156 -17.78625 -17.13642 -16.73913 -16.50669 -16.07628 -15.76396 -15.53168 -15.12881 -14.89897 -14.62920 -14.43865 -14.36486 -14.15305 -14.08479 -13.96708 -13.73134 -13.70877 -13.40406 -13.30237 -13.16723 -13.02417 -12.76761 -12.71528 -12.52763 -12.34966 -12.21053 -11.75341 -11.70340 -11.54467 -11.25120 -11.01687 -10.89895 -10.83020 -10.75580 -10.39198 -9.79888 -9.62207 -9.22945 0.12155 0.49753 0.82243 1.13410 1.35862 1.40686 1.50079 1.66616 1.82828 1.91378 1.93380 2.13491 2.28778 2.58270 3.14972 3.35138 3.43287 3.66430 3.76206 3.87343 4.04681 4.07600 4.17716 4.28801 4.40748 4.42901 4.48286 4.53077 4.59785 4.65205 4.77888 4.79801 4.85405 4.88028 4.89556 4.96144 4.99965 5.06280 5.26201 5.34287 5.41524 5.44747 5.53330 5.56991 5.61002 5.77816 5.79140 6.24117 6.29877 6.97772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.397 5.397 3 C -0.054 4.054 4 C 0.578 3.422 5 O -0.585 6.585 6 N -0.570 5.570 7 C 0.054 3.946 8 C -0.152 4.152 9 C -0.107 4.107 10 C -0.423 4.423 11 Si 1.081 2.919 12 C -0.458 4.458 13 C -0.465 4.465 14 C -0.205 4.205 15 C -0.123 4.123 16 C -0.194 4.194 17 Br -0.009 7.009 18 C 0.050 3.950 19 C -0.068 4.068 20 O -0.539 6.539 21 Si 0.952 3.048 22 H -0.259 1.259 23 H -0.244 1.244 24 H -0.217 1.217 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.205 0.795 45 H 0.136 0.864 46 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 2.100 0.351 5.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.070 5.070 3 C -0.168 4.168 4 C 0.369 3.631 5 O -0.468 6.468 6 N -0.300 5.300 7 C -0.068 4.068 8 C -0.190 4.190 9 C -0.144 4.144 10 C -0.508 4.508 11 Si 1.270 2.730 12 C -0.566 4.566 13 C -0.572 4.572 14 C -0.368 4.368 15 C -0.149 4.149 16 C -0.279 4.279 17 Br 0.075 6.925 18 C -0.072 4.072 19 C -0.177 4.177 20 O -0.347 6.347 21 Si 0.769 3.231 22 H -0.183 1.183 23 H -0.167 1.167 24 H -0.139 1.139 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.113 0.887 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.221 0.779 45 H 0.154 0.846 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.691 1.334 1.001 4.050 hybrid contribution -0.671 0.531 -0.256 0.893 sum 3.020 1.865 0.745 3.627 Atomic orbital electron populations 1.22522 0.74445 1.06248 1.05161 1.43943 1.07728 1.03961 1.51380 1.20148 0.90476 0.87659 1.18477 1.17126 0.85184 0.83917 0.76915 1.90759 1.17887 1.84904 1.53240 1.47322 1.07059 1.05538 1.70063 1.22375 0.79656 1.06211 0.98540 1.21037 1.01823 1.00343 0.95752 1.20270 0.97993 0.95302 1.00828 1.26441 1.03155 1.05659 1.15555 0.78492 0.64770 0.63941 0.65785 1.26473 1.13529 1.06220 1.10422 1.26282 1.07627 1.17431 1.05889 1.27687 1.13206 0.86673 1.09270 1.22788 0.96784 0.93009 1.02331 1.20944 0.91166 0.95291 1.20524 1.96619 1.35874 1.61958 1.98086 1.21132 0.89903 0.90379 1.05789 1.24885 1.02941 0.86577 1.03302 1.86527 1.26208 1.74370 1.47579 0.85594 0.84252 0.80082 0.73157 1.18312 1.16689 1.13864 0.89562 0.86768 0.88722 0.87807 0.85634 0.92822 0.88630 0.91736 0.89438 0.92538 0.89763 0.90519 0.89866 0.89425 0.91929 0.90235 0.90774 0.90200 0.90672 0.77864 0.84638 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.10 10.24 127.77 1.31 1.41 16 2 N -0.40 -2.17 3.16 -519.62 -1.64 -3.81 16 3 C -0.05 -0.34 6.56 40.35 0.26 -0.08 16 4 C 0.58 4.90 7.23 86.45 0.62 5.52 16 5 O -0.59 -8.68 14.39 -4.37 -0.06 -8.74 16 6 N -0.57 -1.09 2.61 -634.22 -1.65 -2.74 16 7 C 0.05 -0.24 4.76 86.37 0.41 0.17 16 8 C -0.15 0.74 3.53 28.36 0.10 0.84 16 9 C -0.11 0.64 5.28 29.16 0.15 0.79 16 10 C -0.42 1.86 4.74 72.44 0.34 2.20 16 11 Si 1.08 -7.44 10.36 68.60 0.71 -6.73 16 12 C -0.46 4.11 7.86 113.37 0.89 5.00 16 13 C -0.47 1.97 8.65 113.37 0.98 2.95 16 14 C -0.20 0.03 5.35 127.42 0.68 0.72 16 15 C -0.12 -0.29 7.76 22.58 0.18 -0.11 16 16 C -0.19 -0.64 6.10 22.04 0.13 -0.51 16 17 Br -0.01 -0.01 29.00 -20.37 -0.59 -0.60 16 18 C 0.05 0.20 5.29 41.35 0.22 0.42 16 19 C -0.07 -0.08 2.77 71.24 0.20 0.11 16 20 O -0.54 -1.92 12.87 -148.98 -1.92 -3.84 16 21 Si 0.95 0.42 26.94 68.60 1.85 2.27 16 22 H -0.26 -0.64 7.11 99.48 0.71 0.06 16 23 H -0.24 -0.33 7.11 99.48 0.71 0.37 16 24 H -0.22 -0.03 5.88 99.48 0.59 0.55 16 25 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 26 H 0.11 -0.49 6.84 -2.39 -0.02 -0.51 16 27 H 0.09 0.49 6.49 -2.39 -0.02 0.47 16 28 H 0.10 -0.54 5.17 -2.39 -0.01 -0.56 16 29 H 0.13 -1.15 3.52 -2.39 -0.01 -1.16 16 30 H 0.05 0.00 6.67 -2.39 -0.02 -0.02 16 31 H 0.10 -0.77 7.03 -2.39 -0.02 -0.79 16 32 H 0.06 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.09 -0.86 6.39 -2.39 -0.02 -0.87 16 34 H 0.06 -0.02 7.91 -2.39 -0.02 -0.04 16 35 H 0.08 -0.46 7.94 -2.39 -0.02 -0.48 16 36 H 0.08 -0.67 7.96 -2.39 -0.02 -0.69 16 37 H 0.08 -0.77 7.96 -2.38 -0.02 -0.79 16 38 H 0.09 -0.95 4.88 -2.39 -0.01 -0.96 16 39 H 0.06 -0.14 7.96 -2.38 -0.02 -0.16 16 40 H 0.08 -0.41 7.96 -2.39 -0.02 -0.42 16 41 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 42 H 0.08 -0.14 7.98 -2.39 -0.02 -0.16 16 43 H 0.07 0.33 7.17 -2.39 -0.02 0.31 16 44 H 0.21 -0.62 2.65 -2.91 -0.01 -0.63 16 45 H 0.14 -0.35 6.48 -2.39 -0.02 -0.36 16 46 H 0.38 0.31 5.93 -74.06 -0.44 -0.13 16 Total: 0.00 -16.70 354.69 4.39 -12.31 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: 1.22 Total: -7.56 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.48 Total: 19.45 kcal Atomic # 7 Polarization: -3.26 SS G_CDS: -3.30 Total: -6.56 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.98 Total: -12.59 kcal Atomic # 14 Polarization: -7.02 SS G_CDS: 2.56 Total: -4.46 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.59 Total: -0.60 kcal Total: -16.70 4.39 -12.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_5000100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.285 kcal (2) G-P(sol) polarization free energy of solvation -16.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds