Wall clock time and date at job start Sun Mar 7 2021 14:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86297 * 109.15455 * 2 1 4 4 C 1.85244 * 109.31494 * 240.47767 * 2 1 3 5 5 C 1.54346 * 110.17247 * 321.44210 * 4 2 1 6 6 C 1.46883 * 111.74621 * 289.11771 * 5 4 2 7 7 C 1.51425 * 115.14120 * 66.38406 * 6 5 4 8 8 N 1.44758 * 109.29838 * 266.87362 * 7 6 5 9 9 C 1.34775 * 121.25139 * 283.28410 * 8 7 6 10 10 O 1.21694 * 119.99891 * 184.50333 * 9 8 7 11 11 C 1.46677 * 119.99883 * 4.49602 * 9 8 7 12 12 C 1.37872 * 126.23441 * 179.29656 * 11 9 8 13 13 C 1.39832 * 107.08865 * 179.97438 * 12 11 9 14 14 C 1.35453 * 107.86412 * 0.02562 * 13 12 11 15 15 C 1.50696 * 125.56439 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.47464 * 119.97565 * 15 14 13 17 17 Si 1.86298 * 109.47255 * 359.97438 * 15 14 13 18 18 H 1.48495 * 109.47099 * 60.00196 * 17 15 14 19 19 H 1.48499 * 109.47287 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46955 * 300.00022 * 17 15 14 21 21 N 1.35538 * 108.87140 * 359.97438 * 14 13 12 22 22 C 1.48289 * 117.49739 * 103.00874 * 8 7 6 23 23 H 1.08993 * 109.47643 * 291.32398 * 1 2 3 24 24 H 1.09008 * 109.46843 * 51.32339 * 1 2 3 25 25 H 1.09001 * 109.46729 * 171.31650 * 1 2 3 26 26 H 1.08996 * 109.47492 * 179.51486 * 3 2 1 27 27 H 1.09005 * 109.46980 * 299.51362 * 3 2 1 28 28 H 1.09003 * 109.47256 * 59.51122 * 3 2 1 29 29 H 1.08997 * 109.35361 * 81.66259 * 4 2 1 30 30 H 1.09004 * 109.35356 * 201.22645 * 4 2 1 31 31 H 1.08999 * 109.02845 * 49.69583 * 5 4 2 32 32 H 1.08998 * 109.02987 * 168.53188 * 5 4 2 33 33 H 1.09002 * 108.33675 * 187.95031 * 6 5 4 34 34 H 1.09002 * 108.33702 * 305.17014 * 6 5 4 35 35 H 1.08996 * 109.22221 * 147.03321 * 7 6 5 36 36 H 1.09008 * 109.57346 * 26.92763 * 7 6 5 37 37 H 1.08005 * 126.45339 * 359.96234 * 12 11 9 38 38 H 1.08003 * 126.07125 * 180.26914 * 13 12 11 39 39 H 1.09002 * 109.46965 * 239.97239 * 15 14 13 40 40 H 0.96709 * 114.00069 * 300.00236 * 16 15 14 41 41 H 0.97000 * 125.67899 * 179.97438 * 21 14 13 42 42 H 1.09000 * 109.63870 * 82.34586 * 22 8 7 43 43 H 1.09004 * 109.64142 * 202.75785 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4743 1.7598 0.0000 4 6 2.4757 -0.8614 -1.5212 5 6 1.5826 -2.0794 -1.8394 6 6 1.7735 -3.1632 -0.8665 7 6 1.3153 -2.8509 0.5426 8 7 2.4323 -2.3359 1.3058 9 6 3.3925 -3.1547 1.7793 10 8 4.2769 -2.7099 2.4869 11 6 3.3712 -4.5820 1.4417 12 6 4.2910 -5.5278 1.8419 13 6 3.8874 -6.7503 1.2960 14 6 2.7535 -6.5346 0.5871 15 6 1.9784 -7.5840 -0.1672 16 8 0.6510 -7.6638 0.3560 17 14 2.8210 -9.2347 0.0228 18 1 2.8770 -9.5992 1.4612 19 1 2.0576 -10.2686 -0.7210 20 1 4.2004 -9.1517 -0.5210 21 7 2.4292 -5.2211 0.6678 22 6 2.4838 -0.8728 1.5418 23 1 -0.3634 0.3737 0.9572 24 1 -0.3633 0.6423 -0.8024 25 1 -0.3633 -1.0159 -0.1552 26 1 3.5642 1.7659 0.0087 27 1 2.1152 2.2692 -0.8944 28 1 2.1010 2.2742 0.8856 29 1 2.4545 -0.1683 -2.3621 30 1 3.4999 -1.1972 -1.3584 31 1 0.5382 -1.7680 -1.8238 32 1 1.8270 -2.4488 -2.8353 33 1 1.2306 -4.0401 -1.2191 34 1 2.8347 -3.4099 -0.8318 35 1 0.9441 -3.7631 1.0096 36 1 0.5203 -2.1058 0.5114 37 1 5.1598 -5.3567 2.4603 38 1 4.3883 -7.6989 1.4210 39 1 1.9373 -7.3164 -1.2231 40 1 0.6111 -7.8983 1.2933 41 1 1.6614 -4.8011 0.2494 42 1 1.8483 -0.6159 2.3893 43 1 3.5105 -0.5710 1.7491 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:50:22 Heat of formation + Delta-G solvation = -30.683982 kcal Electronic energy + Delta-G solvation = -23362.043006 eV Core-core repulsion = 20146.651144 eV Total energy + Delta-G solvation = -3215.391861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.83139 -40.39184 -38.40164 -37.77840 -35.04649 -32.52143 -31.41250 -30.14001 -29.52564 -28.61295 -28.05054 -26.22755 -25.45310 -22.64868 -22.28325 -21.20202 -20.67071 -19.05105 -18.11127 -17.44054 -16.87758 -16.56631 -16.48888 -15.85483 -15.69749 -15.20833 -15.04871 -14.78698 -14.68254 -14.37981 -14.12323 -14.06063 -14.01266 -13.88289 -13.64126 -13.59538 -13.44550 -13.36897 -13.00665 -12.73591 -12.36688 -12.15852 -12.06550 -11.91076 -11.82353 -11.38136 -11.03418 -10.95154 -10.71704 -10.65568 -9.97954 -9.61480 -9.14257 0.44424 0.99876 1.39212 1.44146 1.49240 1.51991 1.60634 1.64891 1.84179 2.02735 2.24648 2.34105 2.47423 3.27873 3.30253 3.54115 3.60675 3.67900 3.73809 4.07234 4.14849 4.28301 4.32174 4.42636 4.46060 4.49190 4.53540 4.54587 4.59857 4.61876 4.62522 4.70350 4.90061 4.97266 5.04874 5.07470 5.12767 5.24988 5.28097 5.40541 5.41810 5.67932 5.90997 6.27116 6.34416 6.38849 7.18276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.013 2.987 3 C -0.448 4.448 4 C -0.412 4.412 5 C -0.102 4.102 6 C -0.165 4.165 7 C 0.066 3.934 8 N -0.594 5.594 9 C 0.589 3.411 10 O -0.524 6.524 11 C -0.048 4.048 12 C -0.100 4.100 13 C -0.206 4.206 14 C 0.012 3.988 15 C -0.068 4.068 16 O -0.543 6.543 17 Si 0.977 3.023 18 H -0.247 1.247 19 H -0.253 1.253 20 H -0.247 1.247 21 N -0.530 5.530 22 C -0.182 4.182 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.381 0.619 41 H 0.424 0.576 42 H 0.073 0.927 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.765 -0.066 -3.161 4.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.564 4.564 2 Si 1.206 2.794 3 C -0.557 4.557 4 C -0.498 4.498 5 C -0.140 4.140 6 C -0.203 4.203 7 C -0.058 4.058 8 N -0.326 5.326 9 C 0.378 3.622 10 O -0.400 6.400 11 C -0.162 4.162 12 C -0.127 4.127 13 C -0.231 4.231 14 C -0.106 4.106 15 C -0.178 4.178 16 O -0.348 6.348 17 Si 0.797 3.203 18 H -0.171 1.171 19 H -0.177 1.177 20 H -0.170 1.170 21 N -0.136 5.136 22 C -0.349 4.349 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.137 0.863 40 H 0.229 0.771 41 H 0.274 0.726 42 H 0.092 0.908 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.167 -0.372 -3.335 4.614 hybrid contribution -0.386 0.493 0.336 0.710 sum -3.552 0.121 -2.999 4.651 Atomic orbital electron populations 1.26497 1.20066 1.04597 1.05191 0.79478 0.67283 0.66971 0.65619 1.26070 1.06587 1.18092 1.04908 1.26266 1.04530 1.03973 1.15055 1.20168 1.00335 0.94596 0.98883 1.21081 1.03723 1.00308 0.95199 1.21725 0.90732 1.01942 0.91377 1.47470 1.23718 1.07343 1.54110 1.17100 0.81777 0.83758 0.79538 1.90847 1.36461 1.75679 1.37033 1.20430 0.96301 0.93008 1.06415 1.21298 0.99248 0.90846 1.01262 1.20712 0.98421 0.99261 1.04682 1.21151 0.99142 0.85584 1.04741 1.24884 0.87392 1.05556 0.99945 1.86495 1.24657 1.93051 1.30616 0.85263 0.79289 0.73821 0.81925 1.17056 1.17685 1.17001 1.43404 1.22979 1.07559 1.39680 1.27164 1.08520 0.83864 1.15392 0.90772 0.90468 0.90708 0.90892 0.90746 0.90847 0.90046 0.90470 0.91296 0.91236 0.90888 0.90321 0.90335 0.86938 0.83137 0.83807 0.86312 0.77127 0.72607 0.90837 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.56 7.85 101.05 0.79 2.36 16 2 Si 1.01 -3.30 10.33 -169.99 -1.76 -5.05 16 3 C -0.45 0.98 8.65 101.05 0.87 1.85 16 4 C -0.41 0.94 4.73 37.86 0.18 1.12 16 5 C -0.10 0.28 5.28 -28.95 -0.15 0.13 16 6 C -0.16 0.39 3.53 -30.46 -0.11 0.29 16 7 C 0.07 -0.13 4.76 -5.77 -0.03 -0.16 16 8 N -0.59 -0.49 2.62 -114.77 -0.30 -0.79 16 9 C 0.59 2.40 7.33 -12.85 -0.09 2.30 16 10 O -0.52 -4.04 16.55 5.19 0.09 -3.95 16 11 C -0.05 -0.13 6.17 -81.98 -0.51 -0.64 16 12 C -0.10 -0.29 10.65 -39.12 -0.42 -0.70 16 13 C -0.21 -0.23 9.32 -39.98 -0.37 -0.61 16 14 C 0.01 0.00 6.47 -81.95 -0.53 -0.53 16 15 C -0.07 0.11 3.08 36.00 0.11 0.22 16 16 O -0.54 0.74 12.88 -35.23 -0.45 0.29 16 17 Si 0.98 -1.62 25.83 -169.99 -4.39 -6.01 16 18 H -0.25 0.29 7.11 56.52 0.40 0.69 16 19 H -0.25 0.10 7.11 56.52 0.40 0.50 16 20 H -0.25 0.20 7.11 56.52 0.40 0.60 16 21 N -0.53 -0.15 4.45 -5.70 -0.03 -0.18 16 22 C -0.18 0.05 5.31 60.83 0.32 0.37 16 23 H 0.07 -0.24 7.96 -51.93 -0.41 -0.66 16 24 H 0.08 -0.26 7.96 -51.92 -0.41 -0.68 16 25 H 0.07 -0.30 4.87 -51.93 -0.25 -0.55 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 27 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.58 16 29 H 0.08 -0.22 7.95 -51.93 -0.41 -0.63 16 30 H 0.08 -0.07 7.91 -51.93 -0.41 -0.48 16 31 H 0.07 -0.27 6.37 -51.93 -0.33 -0.60 16 32 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.07 -0.27 7.15 -51.93 -0.37 -0.64 16 34 H 0.08 -0.04 6.49 -51.93 -0.34 -0.38 16 35 H 0.08 -0.18 5.74 -51.93 -0.30 -0.48 16 36 H 0.11 -0.42 3.48 -51.92 -0.18 -0.60 16 37 H 0.15 0.40 8.06 -52.48 -0.42 -0.03 16 38 H 0.14 -0.07 6.17 -52.48 -0.32 -0.39 16 39 H 0.12 -0.34 7.96 -51.93 -0.41 -0.75 16 40 H 0.38 -1.55 8.70 45.56 0.40 -1.16 16 41 H 0.42 -0.65 2.99 -40.82 -0.12 -0.77 16 42 H 0.07 -0.06 7.98 -51.93 -0.41 -0.47 16 43 H 0.10 0.12 7.27 -51.93 -0.38 -0.25 16 LS Contribution 324.16 15.07 4.89 4.89 Total: 0.00 -7.37 324.16 -7.44 -14.80 By element: Atomic # 1 Polarization: -4.45 SS G_CDS: -5.56 Total: -10.01 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 0.07 Total: 6.01 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -0.33 Total: -0.97 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.37 Total: -3.66 kcal Atomic # 14 Polarization: -4.91 SS G_CDS: -6.15 Total: -11.06 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -7.37 -7.44 -14.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.880 kcal (2) G-P(sol) polarization free energy of solvation -7.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds