Wall clock time and date at job start Sun Mar 7 2021 14:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86297 * 109.15455 * 2 1 4 4 C 1.85244 * 109.31494 * 240.47767 * 2 1 3 5 5 C 1.54346 * 110.17247 * 321.44210 * 4 2 1 6 6 C 1.46883 * 111.74621 * 289.11771 * 5 4 2 7 7 C 1.51425 * 115.14120 * 66.38406 * 6 5 4 8 8 N 1.44758 * 109.29838 * 266.87362 * 7 6 5 9 9 C 1.34775 * 121.25139 * 283.28410 * 8 7 6 10 10 O 1.21694 * 119.99891 * 184.50333 * 9 8 7 11 11 C 1.46677 * 119.99883 * 4.49602 * 9 8 7 12 12 C 1.37872 * 126.23441 * 179.29656 * 11 9 8 13 13 C 1.39832 * 107.08865 * 179.97438 * 12 11 9 14 14 C 1.35453 * 107.86412 * 0.02562 * 13 12 11 15 15 C 1.50696 * 125.56439 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.47464 * 119.97565 * 15 14 13 17 17 Si 1.86298 * 109.47255 * 359.97438 * 15 14 13 18 18 H 1.48495 * 109.47099 * 60.00196 * 17 15 14 19 19 H 1.48499 * 109.47287 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46955 * 300.00022 * 17 15 14 21 21 N 1.35538 * 108.87140 * 359.97438 * 14 13 12 22 22 C 1.48289 * 117.49739 * 103.00874 * 8 7 6 23 23 H 1.08993 * 109.47643 * 291.32398 * 1 2 3 24 24 H 1.09008 * 109.46843 * 51.32339 * 1 2 3 25 25 H 1.09001 * 109.46729 * 171.31650 * 1 2 3 26 26 H 1.08996 * 109.47492 * 179.51486 * 3 2 1 27 27 H 1.09005 * 109.46980 * 299.51362 * 3 2 1 28 28 H 1.09003 * 109.47256 * 59.51122 * 3 2 1 29 29 H 1.08997 * 109.35361 * 81.66259 * 4 2 1 30 30 H 1.09004 * 109.35356 * 201.22645 * 4 2 1 31 31 H 1.08999 * 109.02845 * 49.69583 * 5 4 2 32 32 H 1.08998 * 109.02987 * 168.53188 * 5 4 2 33 33 H 1.09002 * 108.33675 * 187.95031 * 6 5 4 34 34 H 1.09002 * 108.33702 * 305.17014 * 6 5 4 35 35 H 1.08996 * 109.22221 * 147.03321 * 7 6 5 36 36 H 1.09008 * 109.57346 * 26.92763 * 7 6 5 37 37 H 1.08005 * 126.45339 * 359.96234 * 12 11 9 38 38 H 1.08003 * 126.07125 * 180.26914 * 13 12 11 39 39 H 1.09002 * 109.46965 * 239.97239 * 15 14 13 40 40 H 0.96709 * 114.00069 * 300.00236 * 16 15 14 41 41 H 0.97000 * 125.67899 * 179.97438 * 21 14 13 42 42 H 1.09000 * 109.63870 * 82.34586 * 22 8 7 43 43 H 1.09004 * 109.64142 * 202.75785 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4743 1.7598 0.0000 4 6 2.4757 -0.8614 -1.5212 5 6 1.5826 -2.0794 -1.8394 6 6 1.7735 -3.1632 -0.8665 7 6 1.3153 -2.8509 0.5426 8 7 2.4323 -2.3359 1.3058 9 6 3.3925 -3.1547 1.7793 10 8 4.2769 -2.7099 2.4869 11 6 3.3712 -4.5820 1.4417 12 6 4.2910 -5.5278 1.8419 13 6 3.8874 -6.7503 1.2960 14 6 2.7535 -6.5346 0.5871 15 6 1.9784 -7.5840 -0.1672 16 8 0.6510 -7.6638 0.3560 17 14 2.8210 -9.2347 0.0228 18 1 2.8770 -9.5992 1.4612 19 1 2.0576 -10.2686 -0.7210 20 1 4.2004 -9.1517 -0.5210 21 7 2.4292 -5.2211 0.6678 22 6 2.4838 -0.8728 1.5418 23 1 -0.3634 0.3737 0.9572 24 1 -0.3633 0.6423 -0.8024 25 1 -0.3633 -1.0159 -0.1552 26 1 3.5642 1.7659 0.0087 27 1 2.1152 2.2692 -0.8944 28 1 2.1010 2.2742 0.8856 29 1 2.4545 -0.1683 -2.3621 30 1 3.4999 -1.1972 -1.3584 31 1 0.5382 -1.7680 -1.8238 32 1 1.8270 -2.4488 -2.8353 33 1 1.2306 -4.0401 -1.2191 34 1 2.8347 -3.4099 -0.8318 35 1 0.9441 -3.7631 1.0096 36 1 0.5203 -2.1058 0.5114 37 1 5.1598 -5.3567 2.4603 38 1 4.3883 -7.6989 1.4210 39 1 1.9373 -7.3164 -1.2231 40 1 0.6111 -7.8983 1.2933 41 1 1.6614 -4.8011 0.2494 42 1 1.8483 -0.6159 2.3893 43 1 3.5105 -0.5710 1.7491 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_6580494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:50:21 Heat of formation + Delta-G solvation = -26.850082 kcal Electronic energy + Delta-G solvation = -23361.876755 eV Core-core repulsion = 20146.651144 eV Total energy + Delta-G solvation = -3215.225611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 296.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.92432 -40.51742 -38.49485 -37.66972 -35.02980 -32.58601 -31.49473 -30.03596 -29.29516 -28.41809 -28.06436 -26.17917 -25.38573 -22.65597 -22.33265 -21.17285 -20.72857 -19.08181 -18.11244 -17.48738 -16.92619 -16.50980 -16.44432 -15.86190 -15.67989 -15.13616 -15.00991 -14.73874 -14.65911 -14.26217 -14.10884 -14.06474 -13.84483 -13.81249 -13.68372 -13.52204 -13.29783 -13.22149 -12.82729 -12.61749 -12.29979 -12.09692 -11.88814 -11.83870 -11.67742 -11.39855 -11.02724 -10.81700 -10.63994 -10.46988 -10.09197 -9.73207 -9.23177 0.27163 1.10748 1.45211 1.53843 1.58340 1.62348 1.65339 1.88541 1.93267 2.07473 2.22842 2.24136 2.53179 3.42328 3.47704 3.54680 3.61983 3.81544 3.88859 4.18419 4.27146 4.29740 4.34452 4.44973 4.54531 4.70011 4.71980 4.77434 4.77886 4.80689 4.84688 4.90045 4.91483 4.93745 5.04184 5.19409 5.26693 5.31046 5.46433 5.56291 5.57724 5.70287 5.76379 6.18202 6.34634 6.60016 6.95449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.082 2.918 3 C -0.465 4.465 4 C -0.424 4.424 5 C -0.105 4.105 6 C -0.163 4.163 7 C 0.057 3.943 8 N -0.586 5.586 9 C 0.578 3.422 10 O -0.578 6.578 11 C -0.064 4.064 12 C -0.121 4.121 13 C -0.216 4.216 14 C 0.024 3.976 15 C -0.062 4.062 16 O -0.550 6.550 17 Si 1.009 2.991 18 H -0.255 1.255 19 H -0.268 1.268 20 H -0.259 1.259 21 N -0.517 5.517 22 C -0.209 4.209 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.393 0.607 41 H 0.433 0.567 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.160 -0.360 -4.594 7.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.271 2.729 3 C -0.572 4.572 4 C -0.510 4.510 5 C -0.142 4.142 6 C -0.201 4.201 7 C -0.065 4.065 8 N -0.317 5.317 9 C 0.369 3.631 10 O -0.458 6.458 11 C -0.178 4.178 12 C -0.148 4.148 13 C -0.240 4.240 14 C -0.095 4.095 15 C -0.172 4.172 16 O -0.357 6.357 17 Si 0.831 3.169 18 H -0.178 1.178 19 H -0.192 1.192 20 H -0.183 1.183 21 N -0.124 5.124 22 C -0.373 4.373 23 H 0.095 0.905 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.242 0.758 41 H 0.285 0.715 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.582 -0.662 -4.765 7.369 hybrid contribution 0.376 0.573 0.793 1.048 sum -5.206 -0.089 -3.972 6.549 Atomic orbital electron populations 1.26469 1.18756 1.05607 1.05804 0.78461 0.67309 0.64679 0.62414 1.26274 1.06112 1.19574 1.05268 1.26429 1.03717 1.04698 1.16109 1.20226 1.01370 0.94056 0.98590 1.21065 1.02651 1.01463 0.94938 1.22025 0.90208 1.02957 0.91335 1.47570 1.23502 1.07545 1.53084 1.17416 0.81887 0.84585 0.79237 1.90799 1.38675 1.76671 1.39694 1.20273 0.97321 0.92539 1.07618 1.21433 0.99441 0.92030 1.01871 1.20900 0.99079 0.99135 1.04914 1.21497 0.98625 0.85714 1.03675 1.24939 0.87161 1.04491 1.00593 1.86478 1.24385 1.92992 1.31805 0.84789 0.78063 0.73110 0.80917 1.17808 1.19225 1.18323 1.43361 1.22641 1.07496 1.38933 1.27761 1.07433 0.83655 1.18420 0.90453 0.89564 0.89543 0.91905 0.90058 0.90785 0.89301 0.92457 0.89112 0.91248 0.88806 0.92463 0.89678 0.84640 0.84127 0.82533 0.84572 0.75771 0.71543 0.90440 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 4.24 7.85 113.37 0.89 5.13 16 2 Si 1.08 -7.32 10.33 68.60 0.71 -6.61 16 3 C -0.46 1.89 8.65 113.37 0.98 2.88 16 4 C -0.42 2.04 4.73 72.44 0.34 2.38 16 5 C -0.11 0.73 5.28 29.15 0.15 0.88 16 6 C -0.16 0.93 3.53 28.18 0.10 1.03 16 7 C 0.06 -0.26 4.76 86.19 0.41 0.15 16 8 N -0.59 -1.78 2.62 -635.24 -1.66 -3.45 16 9 C 0.58 6.28 7.33 86.45 0.63 6.91 16 10 O -0.58 -11.28 16.55 -4.33 -0.07 -11.35 16 11 C -0.06 -0.47 6.17 40.35 0.25 -0.22 16 12 C -0.12 -0.96 10.65 22.57 0.24 -0.72 16 13 C -0.22 -0.63 9.32 22.01 0.21 -0.42 16 14 C 0.02 0.00 6.47 41.34 0.27 0.26 16 15 C -0.06 0.30 3.08 71.23 0.22 0.52 16 16 O -0.55 2.51 12.88 -148.98 -1.92 0.60 16 17 Si 1.01 -4.01 25.83 68.60 1.77 -2.24 16 18 H -0.25 0.73 7.11 99.48 0.71 1.43 16 19 H -0.27 0.37 7.11 99.48 0.71 1.08 16 20 H -0.26 0.49 7.11 99.48 0.71 1.19 16 21 N -0.52 -0.29 4.45 -171.93 -0.76 -1.05 16 22 C -0.21 -0.24 5.31 127.42 0.68 0.44 16 23 H 0.08 -0.68 7.96 -2.39 -0.02 -0.70 16 24 H 0.09 -0.85 7.96 -2.38 -0.02 -0.87 16 25 H 0.09 -0.98 4.87 -2.39 -0.01 -0.99 16 26 H 0.06 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H 0.08 -0.43 7.96 -2.38 -0.02 -0.45 16 28 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 29 H 0.09 -0.55 7.95 -2.39 -0.02 -0.56 16 30 H 0.06 -0.03 7.91 -2.38 -0.02 -0.05 16 31 H 0.09 -0.99 6.37 -2.39 -0.02 -1.00 16 32 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.09 -0.90 7.15 -2.39 -0.02 -0.92 16 34 H 0.06 -0.03 6.49 -2.39 -0.02 -0.05 16 35 H 0.09 -0.48 5.74 -2.39 -0.01 -0.49 16 36 H 0.14 -1.27 3.48 -2.38 -0.01 -1.28 16 37 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 38 H 0.16 -0.09 6.17 -2.91 -0.02 -0.10 16 39 H 0.14 -1.08 7.96 -2.39 -0.02 -1.10 16 40 H 0.39 -3.83 8.70 -74.05 -0.64 -4.47 16 41 H 0.43 -1.72 2.99 -92.71 -0.28 -2.00 16 42 H 0.08 -0.02 7.98 -2.39 -0.02 -0.04 16 43 H 0.07 0.44 7.27 -2.39 -0.02 0.43 16 Total: 0.00 -19.86 324.16 4.30 -15.55 By element: Atomic # 1 Polarization: -11.53 SS G_CDS: 0.87 Total: -10.66 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 5.37 Total: 19.20 kcal Atomic # 7 Polarization: -2.07 SS G_CDS: -2.43 Total: -4.50 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -1.99 Total: -10.75 kcal Atomic # 14 Polarization: -11.33 SS G_CDS: 2.48 Total: -8.85 kcal Total: -19.86 4.30 -15.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_6580494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.297 kcal (2) G-P(sol) polarization free energy of solvation -19.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds