Wall clock time and date at job start Sun Mar 7 2021 14:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33814 * 122.44569 * 2 1 4 4 C 1.50704 * 124.52350 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47042 * 114.85350 * 4 3 2 6 6 Si 1.86298 * 109.47255 * 234.85411 * 4 3 2 7 7 H 1.48496 * 109.47209 * 180.02562 * 6 4 3 8 8 H 1.48499 * 109.47198 * 299.99827 * 6 4 3 9 9 H 1.48501 * 109.47095 * 60.00022 * 6 4 3 10 10 S 1.70619 * 110.95494 * 180.02562 * 3 2 1 11 11 C 1.75828 * 91.56008 * 0.02562 * 10 3 2 12 12 C 1.46585 * 125.45723 * 179.97438 * 11 10 3 13 13 O 1.21701 * 120.00366 * 187.43098 * 12 11 10 14 14 N 1.34782 * 119.99816 * 7.43292 * 12 11 10 15 15 C 1.44763 * 121.25156 * 355.87965 * 14 12 11 16 16 C 1.51992 * 108.98538 * 283.03731 * 15 14 12 17 17 C 1.46874 * 115.18447 * 266.91397 * 16 15 14 18 18 C 1.54345 * 111.74948 * 66.47130 * 17 16 15 19 19 Si 1.85466 * 110.36051 * 289.11859 * 18 17 16 20 20 C 1.86295 * 109.20038 * 321.29862 * 19 18 17 21 21 C 1.86302 * 109.52107 * 201.82288 * 19 18 17 22 22 C 1.48283 * 121.25024 * 175.84902 * 14 12 11 23 23 C 1.36645 * 109.08438 * 0.26499 * 11 10 3 24 24 H 1.08996 * 109.47602 * 94.69805 * 1 2 3 25 25 H 1.09003 * 109.46489 * 214.69112 * 1 2 3 26 26 H 1.08999 * 109.46949 * 334.68905 * 1 2 3 27 27 H 1.08998 * 109.47152 * 354.85724 * 4 3 2 28 28 H 0.96699 * 114.00212 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.54947 * 42.88911 * 15 14 12 30 30 H 1.08995 * 109.54743 * 163.18630 * 15 14 12 31 31 H 1.09001 * 108.33878 * 28.39125 * 16 15 14 32 32 H 1.09001 * 108.33762 * 145.61344 * 16 15 14 33 33 H 1.09004 * 109.02376 * 187.05575 * 17 16 15 34 34 H 1.08997 * 109.02321 * 305.88408 * 17 16 15 35 35 H 1.09003 * 109.35529 * 49.33139 * 18 17 16 36 36 H 1.09000 * 109.35338 * 169.04100 * 18 17 16 37 37 H 1.09004 * 109.47346 * 183.99984 * 20 19 18 38 38 H 1.09001 * 109.47473 * 304.00995 * 20 19 18 39 39 H 1.09007 * 109.47068 * 64.00576 * 20 19 18 40 40 H 1.09001 * 109.47345 * 299.02696 * 21 19 18 41 41 H 1.09002 * 109.47041 * 59.02656 * 21 19 18 42 42 H 1.08999 * 109.47273 * 179.02382 * 21 19 18 43 43 H 1.08998 * 109.64527 * 262.09822 * 22 14 12 44 44 H 1.09001 * 109.64073 * 22.51499 * 22 14 12 45 45 H 1.08004 * 123.34720 * 179.73216 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 1.9706 3.1758 1.2231 6 14 2.3224 3.4836 -1.4357 7 1 1.7419 4.8504 -1.4348 8 1 3.7993 3.5736 -1.3106 9 1 1.9740 2.7982 -2.7061 10 16 3.8970 0.7894 -0.0007 11 6 3.5937 -0.9426 -0.0018 12 6 4.6232 -1.9861 -0.0033 13 8 4.3065 -3.1532 -0.1403 14 7 5.9205 -1.6530 0.1470 15 6 6.3365 -0.2685 0.2235 16 6 6.3233 0.3297 -1.1737 17 6 7.6030 0.2683 -1.8919 18 6 8.0059 -1.1852 -2.2194 19 14 8.4983 -2.0825 -0.6727 20 6 9.4559 -0.9247 0.4287 21 6 9.5751 -3.5376 -1.1131 22 6 6.9753 -2.6910 0.2408 23 6 2.2447 -1.1599 -0.0075 24 1 -0.3634 -0.0842 -1.0241 25 1 -0.3632 -0.8450 0.5849 26 1 -0.3633 0.9290 0.4394 27 1 0.5513 2.4501 -0.0912 28 1 1.6227 4.0753 1.2929 29 1 5.6486 0.2841 0.8635 30 1 7.3443 -0.2128 0.6348 31 1 5.5729 -0.1955 -1.7645 32 1 6.0262 1.3756 -1.0961 33 1 7.5161 0.8310 -2.8214 34 1 8.3788 0.7217 -1.2749 35 1 7.1620 -1.6990 -2.6798 36 1 8.8471 -1.1795 -2.9126 37 1 9.8084 -1.4665 1.3064 38 1 10.3095 -0.5251 -0.1188 39 1 8.8099 -0.1049 0.7432 40 1 9.0168 -4.2229 -1.7509 41 1 10.4603 -3.1871 -1.6438 42 1 9.8782 -4.0541 -0.2024 43 1 7.2225 -2.8687 1.2874 44 1 6.6206 -3.6159 -0.2139 45 1 1.8021 -2.1451 -0.0135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16946170_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:50:48 Heat of formation + Delta-G solvation = -65.729178 kcal Electronic energy + Delta-G solvation = -24913.909393 eV Core-core repulsion = 21567.812256 eV Total energy + Delta-G solvation = -3346.097137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.05375 -39.69677 -38.08974 -37.48351 -34.94236 -32.53622 -30.31307 -29.84388 -29.45317 -28.62331 -28.03998 -25.95350 -25.29376 -23.68770 -21.93614 -20.65091 -19.61499 -18.99997 -18.49288 -17.52788 -17.24656 -16.60760 -16.06382 -15.91244 -15.72144 -15.34247 -14.98329 -14.91709 -14.66918 -14.44031 -14.24489 -14.12787 -13.95156 -13.88489 -13.63586 -13.51121 -13.38065 -13.28335 -13.06392 -13.04028 -12.87883 -12.64653 -12.55286 -12.28926 -12.08121 -11.85699 -11.71615 -11.41474 -11.25855 -10.96806 -10.80971 -10.59627 -10.55835 -9.67813 -9.34683 -9.18067 -0.48102 0.50981 0.92919 1.03861 1.26148 1.33580 1.43824 1.51428 1.58617 1.67373 1.80959 2.10896 2.30741 2.42539 3.21639 3.48297 3.61098 3.79280 3.87302 3.90483 4.16843 4.21417 4.26043 4.33654 4.44284 4.52684 4.56844 4.58997 4.61698 4.63741 4.66389 4.68766 4.73756 4.78225 4.85752 4.92713 4.99210 5.05459 5.10400 5.20974 5.33877 5.34565 5.39403 5.45317 5.50831 5.52317 6.35673 6.42854 7.20522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.100 4.100 3 C -0.225 4.225 4 C -0.047 4.047 5 O -0.543 6.543 6 Si 0.915 3.085 7 H -0.241 1.241 8 H -0.234 1.234 9 H -0.241 1.241 10 S 0.243 5.757 11 C -0.269 4.269 12 C 0.591 3.409 13 O -0.528 6.528 14 N -0.589 5.589 15 C 0.066 3.934 16 C -0.156 4.156 17 C -0.102 4.102 18 C -0.410 4.410 19 Si 1.008 2.992 20 C -0.455 4.455 21 C -0.447 4.447 22 C -0.182 4.182 23 C -0.047 4.047 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.383 0.617 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.098 0.902 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.741 4.932 -0.712 5.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.113 4.113 3 C -0.343 4.343 4 C -0.159 4.159 5 O -0.349 6.349 6 Si 0.735 3.265 7 H -0.164 1.164 8 H -0.157 1.157 9 H -0.164 1.164 10 S 0.515 5.485 11 C -0.389 4.389 12 C 0.379 3.621 13 O -0.406 6.406 14 N -0.321 5.321 15 C -0.059 4.059 16 C -0.195 4.195 17 C -0.139 4.139 18 C -0.497 4.497 19 Si 1.202 2.798 20 C -0.562 4.562 21 C -0.556 4.556 22 C -0.350 4.350 23 C -0.081 4.081 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.231 0.769 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.117 0.883 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.444 5.133 -1.363 6.329 hybrid contribution -1.998 -0.573 0.391 2.115 sum 1.446 4.560 -0.971 4.881 Atomic orbital electron populations 1.20612 0.89508 1.03189 1.02638 1.18600 0.97873 0.90834 1.04018 1.23970 1.02253 0.97834 1.10231 1.24142 1.02512 0.92673 0.96575 1.86522 1.79092 1.32217 1.37106 0.86175 0.82454 0.80238 0.77677 1.16352 1.15694 1.16422 1.83740 0.99898 0.97649 1.67222 1.24591 0.98021 0.97153 1.19158 1.16981 0.81251 0.87226 0.76603 1.90824 1.80974 1.18786 1.49992 1.47421 1.05557 1.06544 1.72612 1.21928 1.03632 0.82309 0.97981 1.21052 1.00125 1.02320 0.96049 1.20201 0.96561 0.96523 1.00661 1.26270 1.05611 1.02643 1.15177 0.79571 0.65202 0.67700 0.67299 1.26504 1.09189 1.10334 1.10202 1.26060 1.09750 1.14028 1.05720 1.27124 1.02921 0.96481 1.08425 1.20581 0.90963 0.99825 0.96713 0.90871 0.90995 0.91209 0.89702 0.76924 0.89560 0.86687 0.90741 0.90183 0.91307 0.91401 0.90507 0.90203 0.90795 0.90486 0.90610 0.90923 0.90759 0.90886 0.90793 0.88334 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.03 9.75 36.01 0.35 0.38 16 2 C -0.10 -0.20 5.78 -106.45 -0.62 -0.81 16 3 C -0.22 -0.38 4.83 -35.86 -0.17 -0.55 16 4 C -0.05 0.02 2.77 36.01 0.10 0.12 16 5 O -0.54 0.20 12.86 -35.23 -0.45 -0.25 16 6 Si 0.92 -0.75 27.48 -169.99 -4.67 -5.42 16 7 H -0.24 0.29 7.11 56.52 0.40 0.69 16 8 H -0.23 0.08 7.11 56.52 0.40 0.49 16 9 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 10 S 0.24 0.31 14.12 -107.50 -1.52 -1.21 16 11 C -0.27 -0.92 6.00 -36.79 -0.22 -1.14 16 12 C 0.59 2.78 7.21 -12.89 -0.09 2.69 16 13 O -0.53 -4.26 16.46 5.19 0.09 -4.18 16 14 N -0.59 -1.01 2.61 -114.48 -0.30 -1.31 16 15 C 0.07 -0.05 4.80 -5.48 -0.03 -0.07 16 16 C -0.16 0.17 3.43 -30.18 -0.10 0.07 16 17 C -0.10 0.20 5.29 -28.96 -0.15 0.04 16 18 C -0.41 0.71 4.74 37.86 0.18 0.89 16 19 Si 1.01 -2.71 10.36 -169.99 -1.76 -4.47 16 20 C -0.46 1.35 7.81 101.05 0.79 2.14 16 21 C -0.45 0.82 8.65 101.05 0.87 1.70 16 22 C -0.18 -0.05 5.36 60.83 0.33 0.28 16 23 C -0.05 -0.15 9.81 -40.44 -0.40 -0.55 16 24 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 25 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.07 -0.07 6.45 -51.93 -0.33 -0.41 16 27 H 0.09 -0.17 5.99 -51.93 -0.31 -0.49 16 28 H 0.38 -1.87 8.74 45.56 0.40 -1.47 16 29 H 0.09 -0.05 4.89 -25.36 -0.12 -0.18 16 30 H 0.12 -0.32 3.37 -51.93 -0.17 -0.49 16 31 H 0.07 0.02 6.75 -51.93 -0.35 -0.33 16 32 H 0.08 -0.16 7.03 -51.93 -0.36 -0.53 16 33 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 34 H 0.07 -0.22 6.73 -51.93 -0.35 -0.57 16 35 H 0.08 -0.03 7.91 -51.93 -0.41 -0.44 16 36 H 0.08 -0.18 7.94 -51.93 -0.41 -0.59 16 37 H 0.07 -0.21 7.96 -51.93 -0.41 -0.63 16 38 H 0.08 -0.24 7.96 -51.93 -0.41 -0.65 16 39 H 0.08 -0.26 5.08 -51.92 -0.26 -0.52 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 41 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 42 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 43 H 0.07 -0.03 7.98 -51.93 -0.41 -0.45 16 44 H 0.10 0.17 7.16 -51.93 -0.37 -0.20 16 45 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 LS Contribution 349.75 15.07 5.27 5.27 Total: 0.00 -7.45 349.75 -8.55 -15.99 By element: Atomic # 1 Polarization: -3.55 SS G_CDS: -6.04 Total: -9.59 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 0.84 Total: 5.17 kcal Atomic # 7 Polarization: -1.01 SS G_CDS: -0.30 Total: -1.31 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.37 Total: -4.43 kcal Atomic # 14 Polarization: -3.46 SS G_CDS: -6.43 Total: -9.90 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -7.45 -8.55 -15.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.737 kcal (2) G-P(sol) polarization free energy of solvation -7.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds