Wall clock time and date at job start Sun Mar 7 2021 14:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33814 * 122.44569 * 2 1 4 4 C 1.50704 * 124.52350 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47042 * 114.85350 * 4 3 2 6 6 Si 1.86298 * 109.47255 * 234.85411 * 4 3 2 7 7 H 1.48496 * 109.47209 * 180.02562 * 6 4 3 8 8 H 1.48499 * 109.47198 * 299.99827 * 6 4 3 9 9 H 1.48501 * 109.47095 * 60.00022 * 6 4 3 10 10 S 1.70619 * 110.95494 * 180.02562 * 3 2 1 11 11 C 1.75828 * 91.56008 * 0.02562 * 10 3 2 12 12 C 1.46585 * 125.45723 * 179.97438 * 11 10 3 13 13 O 1.21701 * 120.00366 * 187.43098 * 12 11 10 14 14 N 1.34782 * 119.99816 * 7.43292 * 12 11 10 15 15 C 1.44763 * 121.25156 * 355.87965 * 14 12 11 16 16 C 1.51992 * 108.98538 * 283.03731 * 15 14 12 17 17 C 1.46874 * 115.18447 * 266.91397 * 16 15 14 18 18 C 1.54345 * 111.74948 * 66.47130 * 17 16 15 19 19 Si 1.85466 * 110.36051 * 289.11859 * 18 17 16 20 20 C 1.86295 * 109.20038 * 321.29862 * 19 18 17 21 21 C 1.86302 * 109.52107 * 201.82288 * 19 18 17 22 22 C 1.48283 * 121.25024 * 175.84902 * 14 12 11 23 23 C 1.36645 * 109.08438 * 0.26499 * 11 10 3 24 24 H 1.08996 * 109.47602 * 94.69805 * 1 2 3 25 25 H 1.09003 * 109.46489 * 214.69112 * 1 2 3 26 26 H 1.08999 * 109.46949 * 334.68905 * 1 2 3 27 27 H 1.08998 * 109.47152 * 354.85724 * 4 3 2 28 28 H 0.96699 * 114.00212 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.54947 * 42.88911 * 15 14 12 30 30 H 1.08995 * 109.54743 * 163.18630 * 15 14 12 31 31 H 1.09001 * 108.33878 * 28.39125 * 16 15 14 32 32 H 1.09001 * 108.33762 * 145.61344 * 16 15 14 33 33 H 1.09004 * 109.02376 * 187.05575 * 17 16 15 34 34 H 1.08997 * 109.02321 * 305.88408 * 17 16 15 35 35 H 1.09003 * 109.35529 * 49.33139 * 18 17 16 36 36 H 1.09000 * 109.35338 * 169.04100 * 18 17 16 37 37 H 1.09004 * 109.47346 * 183.99984 * 20 19 18 38 38 H 1.09001 * 109.47473 * 304.00995 * 20 19 18 39 39 H 1.09007 * 109.47068 * 64.00576 * 20 19 18 40 40 H 1.09001 * 109.47345 * 299.02696 * 21 19 18 41 41 H 1.09002 * 109.47041 * 59.02656 * 21 19 18 42 42 H 1.08999 * 109.47273 * 179.02382 * 21 19 18 43 43 H 1.08998 * 109.64527 * 262.09822 * 22 14 12 44 44 H 1.09001 * 109.64073 * 22.51499 * 22 14 12 45 45 H 1.08004 * 123.34720 * 179.73216 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 1.9706 3.1758 1.2231 6 14 2.3224 3.4836 -1.4357 7 1 1.7419 4.8504 -1.4348 8 1 3.7993 3.5736 -1.3106 9 1 1.9740 2.7982 -2.7061 10 16 3.8970 0.7894 -0.0007 11 6 3.5937 -0.9426 -0.0018 12 6 4.6232 -1.9861 -0.0033 13 8 4.3065 -3.1532 -0.1403 14 7 5.9205 -1.6530 0.1470 15 6 6.3365 -0.2685 0.2235 16 6 6.3233 0.3297 -1.1737 17 6 7.6030 0.2683 -1.8919 18 6 8.0059 -1.1852 -2.2194 19 14 8.4983 -2.0825 -0.6727 20 6 9.4559 -0.9247 0.4287 21 6 9.5751 -3.5376 -1.1131 22 6 6.9753 -2.6910 0.2408 23 6 2.2447 -1.1599 -0.0075 24 1 -0.3634 -0.0842 -1.0241 25 1 -0.3632 -0.8450 0.5849 26 1 -0.3633 0.9290 0.4394 27 1 0.5513 2.4501 -0.0912 28 1 1.6227 4.0753 1.2929 29 1 5.6486 0.2841 0.8635 30 1 7.3443 -0.2128 0.6348 31 1 5.5729 -0.1955 -1.7645 32 1 6.0262 1.3756 -1.0961 33 1 7.5161 0.8310 -2.8214 34 1 8.3788 0.7217 -1.2749 35 1 7.1620 -1.6990 -2.6798 36 1 8.8471 -1.1795 -2.9126 37 1 9.8084 -1.4665 1.3064 38 1 10.3095 -0.5251 -0.1188 39 1 8.8099 -0.1049 0.7432 40 1 9.0168 -4.2229 -1.7509 41 1 10.4603 -3.1871 -1.6438 42 1 9.8782 -4.0541 -0.2024 43 1 7.2225 -2.8687 1.2874 44 1 6.6206 -3.6159 -0.2139 45 1 1.8021 -2.1451 -0.0135 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946170_6739946.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:50:47 Heat of formation + Delta-G solvation = -60.546579 kcal Electronic energy + Delta-G solvation = -24913.684659 eV Core-core repulsion = 21567.812256 eV Total energy + Delta-G solvation = -3345.872403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.26894 -39.76792 -38.21261 -37.48013 -34.99073 -32.65083 -30.26515 -29.84360 -29.26912 -28.50368 -28.07321 -25.96463 -25.29524 -23.78974 -21.89002 -20.75025 -19.74004 -19.10457 -18.44851 -17.63566 -17.32318 -16.74235 -16.05353 -15.99713 -15.81919 -15.27930 -14.99856 -14.95436 -14.62936 -14.44749 -14.22427 -14.10143 -13.85184 -13.78561 -13.59402 -13.47604 -13.25243 -13.21029 -13.10312 -13.00154 -12.85194 -12.60740 -12.53409 -12.25162 -12.05387 -11.80492 -11.63760 -11.47778 -11.31781 -10.99735 -10.79355 -10.54460 -10.42446 -9.84047 -9.44508 -9.28196 -0.66678 0.36630 0.84971 1.01547 1.22150 1.39379 1.46354 1.53915 1.66574 1.87260 1.89951 2.00806 2.15137 2.55003 3.29878 3.42410 3.60392 3.85043 3.91845 3.98720 4.09899 4.27652 4.31717 4.41413 4.44299 4.44846 4.49806 4.72938 4.77186 4.77864 4.79981 4.81958 4.85927 4.86491 4.93133 4.93847 4.99123 5.00598 5.24704 5.31125 5.32716 5.36209 5.41430 5.50251 5.59077 5.73792 6.16011 6.75802 6.92481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.112 4.112 3 C -0.236 4.236 4 C -0.048 4.048 5 O -0.558 6.558 6 Si 0.937 3.063 7 H -0.228 1.228 8 H -0.240 1.240 9 H -0.262 1.262 10 S 0.279 5.721 11 C -0.294 4.294 12 C 0.580 3.420 13 O -0.579 6.579 14 N -0.583 5.583 15 C 0.058 3.942 16 C -0.157 4.157 17 C -0.105 4.105 18 C -0.422 4.422 19 Si 1.073 2.927 20 C -0.456 4.456 21 C -0.461 4.461 22 C -0.210 4.210 23 C -0.060 4.060 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.403 0.597 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 7.391 -0.341 7.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.124 4.124 3 C -0.354 4.354 4 C -0.160 4.160 5 O -0.368 6.368 6 Si 0.757 3.243 7 H -0.151 1.151 8 H -0.163 1.163 9 H -0.186 1.186 10 S 0.551 5.449 11 C -0.415 4.415 12 C 0.369 3.631 13 O -0.461 6.461 14 N -0.313 5.313 15 C -0.066 4.066 16 C -0.196 4.196 17 C -0.142 4.142 18 C -0.508 4.508 19 Si 1.263 2.737 20 C -0.564 4.564 21 C -0.569 4.569 22 C -0.373 4.373 23 C -0.094 4.094 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.254 0.746 29 H 0.105 0.895 30 H 0.159 0.841 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.521 7.622 -0.976 8.916 hybrid contribution -2.335 -1.341 0.271 2.706 sum 2.186 6.281 -0.705 6.688 Atomic orbital electron populations 1.20671 0.88040 1.03836 1.03369 1.18775 0.99040 0.90388 1.04212 1.24415 1.02661 0.99027 1.09317 1.24215 1.03518 0.91408 0.96827 1.86471 1.79556 1.33848 1.36897 0.85884 0.81908 0.80358 0.76191 1.15076 1.16345 1.18603 1.83426 0.99786 0.95321 1.66327 1.24635 0.97936 0.98522 1.20360 1.17330 0.82466 0.86914 0.76346 1.90775 1.81931 1.20677 1.52744 1.47554 1.04880 1.07997 1.70890 1.22212 1.04951 0.80804 0.98619 1.21068 1.00393 1.02702 0.95418 1.20260 0.96575 0.96357 1.01042 1.26433 1.05206 1.03074 1.16084 0.78637 0.62451 0.66744 0.65909 1.26459 1.09511 1.10260 1.10178 1.26226 1.10306 1.14555 1.05788 1.27730 1.04145 0.95852 1.09546 1.20706 0.91331 1.00190 0.97219 0.89972 0.90971 0.90017 0.87933 0.74625 0.89506 0.84143 0.92637 0.88861 0.91180 0.89118 0.92494 0.89220 0.90342 0.89344 0.89763 0.91911 0.89982 0.90708 0.90184 0.90732 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.02 9.75 71.24 0.69 0.71 16 2 C -0.11 -0.56 5.78 -21.05 -0.12 -0.68 16 3 C -0.24 -0.85 4.83 24.68 0.12 -0.73 16 4 C -0.05 0.09 2.77 71.24 0.20 0.28 16 5 O -0.56 1.17 12.86 -148.98 -1.92 -0.75 16 6 Si 0.94 -2.36 27.48 68.60 1.88 -0.47 16 7 H -0.23 0.99 7.11 99.48 0.71 1.69 16 8 H -0.24 0.40 7.11 99.48 0.71 1.11 16 9 H -0.26 -0.22 7.11 99.48 0.71 0.48 16 10 S 0.28 0.87 14.12 -56.49 -0.80 0.07 16 11 C -0.29 -2.73 6.00 24.08 0.14 -2.58 16 12 C 0.58 7.30 7.21 86.42 0.62 7.92 16 13 O -0.58 -11.89 16.46 -4.35 -0.07 -11.97 16 14 N -0.58 -3.08 2.61 -634.32 -1.65 -4.73 16 15 C 0.06 -0.08 4.80 86.37 0.41 0.34 16 16 C -0.16 0.35 3.43 28.36 0.10 0.45 16 17 C -0.11 0.50 5.29 29.15 0.15 0.66 16 18 C -0.42 1.44 4.74 72.44 0.34 1.79 16 19 Si 1.07 -5.93 10.36 68.60 0.71 -5.22 16 20 C -0.46 3.75 7.81 113.37 0.89 4.64 16 21 C -0.46 1.61 8.65 113.37 0.98 2.59 16 22 C -0.21 -0.50 5.36 127.42 0.68 0.18 16 23 C -0.06 -0.53 9.81 21.71 0.21 -0.32 16 24 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 25 H 0.07 -0.02 8.14 -2.39 -0.02 -0.04 16 26 H 0.08 -0.22 6.45 -2.39 -0.02 -0.24 16 27 H 0.10 -0.56 5.99 -2.39 -0.01 -0.58 16 28 H 0.40 -4.66 8.74 -74.06 -0.65 -5.30 16 29 H 0.09 -0.11 4.89 -19.28 -0.09 -0.21 16 30 H 0.14 -0.96 3.37 -2.39 -0.01 -0.97 16 31 H 0.05 0.11 6.75 -2.39 -0.02 0.10 16 32 H 0.09 -0.46 7.03 -2.39 -0.02 -0.48 16 33 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 34 H 0.09 -0.82 6.73 -2.39 -0.02 -0.84 16 35 H 0.06 0.05 7.91 -2.39 -0.02 0.03 16 36 H 0.09 -0.47 7.94 -2.39 -0.02 -0.49 16 37 H 0.08 -0.63 7.96 -2.38 -0.02 -0.65 16 38 H 0.09 -0.83 7.96 -2.39 -0.02 -0.85 16 39 H 0.08 -0.82 5.08 -2.38 -0.01 -0.83 16 40 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 41 H 0.08 -0.40 7.96 -2.39 -0.02 -0.41 16 42 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 43 H 0.08 0.04 7.98 -2.39 -0.02 0.02 16 44 H 0.07 0.53 7.16 -2.39 -0.02 0.52 16 45 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 Total: 0.00 -19.99 349.75 4.61 -15.37 By element: Atomic # 1 Polarization: -8.58 SS G_CDS: 1.03 Total: -7.55 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 5.43 Total: 15.24 kcal Atomic # 7 Polarization: -3.08 SS G_CDS: -1.65 Total: -4.73 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.99 Total: -12.71 kcal Atomic # 14 Polarization: -8.29 SS G_CDS: 2.60 Total: -5.69 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -0.80 Total: 0.07 kcal Total: -19.99 4.61 -15.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946170_6739946.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.173 kcal (2) G-P(sol) polarization free energy of solvation -19.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds