Wall clock time and date at job start Sun Mar 7 2021 14:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35656 * 116.99966 * 2 1 4 4 C 1.38399 * 120.12373 * 0.02562 * 3 2 1 5 5 C 1.38718 * 120.03393 * 180.02562 * 4 3 2 6 6 O 1.35719 * 119.86571 * 179.97438 * 5 4 3 7 7 C 1.42905 * 116.99732 * 0.02562 * 6 5 4 8 8 C 1.39145 * 120.27321 * 359.97438 * 5 4 3 9 9 C 1.50708 * 119.87795 * 180.02562 * 8 5 4 10 10 O 1.42897 * 109.47267 * 74.99705 * 9 8 5 11 11 Si 1.86301 * 109.46695 * 194.99876 * 9 8 5 12 12 C 1.37576 * 120.24203 * 359.74074 * 8 5 4 13 13 C 1.39822 * 119.96275 * 0.53321 * 12 8 5 14 14 C 1.47301 * 120.13800 * 179.74297 * 13 12 8 15 15 O 1.21618 * 120.00053 * 179.72589 * 14 13 12 16 16 N 1.34775 * 119.99550 * 359.72476 * 14 13 12 17 17 C 1.46505 * 119.99773 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47324 * 180.02562 * 17 16 14 19 19 H 1.09002 * 112.85044 * 43.80181 * 18 17 16 20 20 C 1.53776 * 113.61696 * 174.99812 * 18 17 16 21 21 C 1.53782 * 87.08534 * 139.98256 * 20 18 17 22 22 H 1.09000 * 113.61557 * 219.93781 * 21 20 18 23 23 N 1.46498 * 113.61545 * 89.11204 * 21 20 18 24 24 C 1.34941 * 126.04014 * 275.00912 * 23 21 20 25 25 C 1.35325 * 107.74555 * 179.97438 * 24 23 21 26 26 C 1.39868 * 107.91737 * 0.26206 * 25 24 23 27 27 N 1.30842 * 108.20327 * 359.55203 * 26 25 24 28 28 C 1.53774 * 113.61661 * 272.49706 * 18 17 16 29 29 H 1.08996 * 109.47228 * 59.99873 * 1 2 3 30 30 H 1.09002 * 109.47335 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46948 * 300.00025 * 1 2 3 32 32 H 1.08005 * 119.98083 * 359.97289 * 4 3 2 33 33 H 1.09000 * 109.47435 * 59.99316 * 7 6 5 34 34 H 1.09002 * 109.47012 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46531 * 299.99831 * 7 6 5 36 36 H 1.08998 * 109.46784 * 314.99905 * 9 8 5 37 37 H 0.96700 * 114.00373 * 179.97438 * 10 9 8 38 38 H 1.48497 * 109.99917 * 299.99707 * 11 9 8 39 39 H 1.48496 * 110.00146 * 61.31864 * 11 9 8 40 40 H 1.07999 * 120.02095 * 180.27978 * 12 8 5 41 41 H 0.96991 * 120.00345 * 0.02562 * 16 14 13 42 42 H 1.08996 * 109.47514 * 59.99761 * 17 16 14 43 43 H 1.09007 * 109.46944 * 299.99934 * 17 16 14 44 44 H 1.08997 * 113.61627 * 25.42845 * 20 18 17 45 45 H 1.09004 * 113.61784 * 254.53215 * 20 18 17 46 46 H 1.07997 * 126.13283 * 359.97438 * 24 23 21 47 47 H 1.08002 * 126.03725 * 179.97438 * 25 24 23 48 48 H 1.08007 * 125.89524 * 179.73435 * 26 25 24 49 49 H 1.09006 * 113.61840 * 105.46862 * 28 18 17 50 50 H 1.09005 * 113.61538 * 334.56672 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2936 2.3710 0.0005 5 6 1.9253 3.6060 0.0000 6 8 1.1852 4.7437 0.0000 7 6 -0.2359 4.5931 0.0011 8 6 3.3146 3.6833 -0.0005 9 6 3.9916 5.0298 -0.0005 10 8 3.8945 5.6118 1.3009 11 14 5.7862 4.8224 -0.4559 12 6 4.0724 2.5351 0.0048 13 6 3.4461 1.2850 -0.0004 14 6 4.2538 0.0532 -0.0004 15 8 3.7065 -1.0329 0.0001 16 7 5.5994 0.1297 -0.0009 17 6 6.4028 -1.0954 -0.0015 18 6 7.8887 -0.7309 -0.0014 19 1 8.1271 0.0737 0.6942 20 6 8.8214 -1.9474 0.1209 21 6 9.7293 -1.2561 -0.9100 22 1 10.1576 -1.9400 -1.6427 23 7 10.7271 -0.3668 -0.3103 24 6 10.5338 0.9220 0.0395 25 6 11.6945 1.3877 0.5564 26 6 12.6309 0.3495 0.5155 27 7 12.0503 -0.7046 0.0019 28 6 8.4723 -0.5240 -1.4089 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2149 2.3165 0.0005 33 1 -0.5425 4.0442 0.8915 34 1 -0.7055 5.5768 0.0015 35 1 -0.5436 4.0435 -0.8884 36 1 3.5053 5.6809 -0.7269 37 1 4.3103 6.4817 1.3748 38 1 6.4604 3.9366 0.5269 39 1 5.9008 4.2474 -1.8202 40 1 5.1505 2.5993 0.0090 41 1 6.0359 0.9959 -0.0010 42 1 6.1720 -1.6809 -0.8914 43 1 6.1727 -1.6812 0.8885 44 1 8.3782 -2.8755 -0.2403 45 1 9.2780 -2.0504 1.1053 46 1 9.6170 1.4817 -0.0728 47 1 11.8686 2.3861 0.9297 48 1 13.6553 0.4070 0.8528 49 1 8.6471 0.5223 -1.6597 50 1 7.9337 -1.0628 -2.1886 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:55:14 Heat of formation + Delta-G solvation = 11.916681 kcal Electronic energy + Delta-G solvation = -34515.694919 eV Core-core repulsion = 29900.049369 eV Total energy + Delta-G solvation = -4615.645550 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.172 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.46079 -42.16513 -40.76849 -40.10922 -39.59058 -38.38693 -37.07186 -35.76840 -32.70925 -32.42511 -31.83134 -31.03419 -29.10958 -28.96860 -28.00140 -26.94940 -26.08792 -25.11379 -24.18577 -22.74550 -22.35017 -21.80708 -21.46332 -20.36159 -20.09289 -18.76948 -18.41207 -18.32272 -17.89798 -17.44359 -17.17542 -16.83689 -16.65063 -16.55748 -16.45591 -16.21522 -15.82923 -15.73057 -15.55278 -15.33524 -15.26007 -14.76696 -14.54047 -14.33106 -14.18205 -13.92393 -13.89616 -13.78969 -13.60270 -13.48520 -13.31942 -13.00031 -12.76910 -12.60781 -12.57752 -12.20379 -12.14672 -11.92668 -11.82272 -11.74495 -11.66439 -11.55967 -11.05121 -10.40198 -10.28102 -10.20800 -10.03164 -9.54111 -9.29601 -4.89933 -0.39534 -0.04619 0.91759 1.31597 1.49597 1.58872 1.70935 1.91620 1.94420 1.96219 2.02173 2.08918 2.46733 3.11638 3.23960 3.27224 3.40351 3.49824 3.59337 3.63166 3.63838 3.87791 3.93788 3.96290 4.00680 4.08359 4.11084 4.15635 4.22230 4.22965 4.26899 4.30894 4.40320 4.43460 4.57664 4.59828 4.63543 4.64130 4.65515 4.66044 4.70737 4.79908 4.84351 4.85059 4.92819 4.95530 5.08625 5.14885 5.16663 5.30333 5.72675 5.94589 6.13352 6.18727 6.34617 6.74348 6.97030 7.07873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.303 6.303 3 C 0.218 3.782 4 C -0.309 4.309 5 C 0.217 3.783 6 O -0.307 6.307 7 C 0.011 3.989 8 C -0.169 4.169 9 C -0.071 4.071 10 O -0.563 6.563 11 Si 0.761 3.239 12 C -0.013 4.013 13 C -0.232 4.232 14 C 0.562 3.438 15 O -0.560 6.560 16 N -0.721 5.721 17 C 0.135 3.865 18 C -0.118 4.118 19 H 0.103 0.897 20 C -0.131 4.131 21 C 0.124 3.876 22 H 0.111 0.889 23 N -0.361 5.361 24 C 0.050 3.950 25 C -0.285 4.285 26 C 0.033 3.967 27 N -0.340 5.340 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.169 0.831 33 H 0.066 0.934 34 H 0.125 0.875 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.400 0.600 38 H -0.266 1.266 39 H -0.278 1.278 40 H 0.147 0.853 41 H 0.405 0.595 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.197 0.803 47 H 0.167 0.833 48 H 0.201 0.799 49 H 0.090 0.910 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 8.325 -1.881 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.214 6.214 3 C 0.168 3.832 4 C -0.328 4.328 5 C 0.168 3.832 6 O -0.218 6.218 7 C -0.083 4.083 8 C -0.170 4.170 9 C -0.180 4.180 10 O -0.373 6.373 11 Si 0.663 3.337 12 C -0.031 4.031 13 C -0.236 4.236 14 C 0.351 3.649 15 O -0.439 6.439 16 N -0.374 5.374 17 C 0.012 3.988 18 C -0.136 4.136 19 H 0.121 0.879 20 C -0.170 4.170 21 C 0.021 3.979 22 H 0.129 0.871 23 N -0.143 5.143 24 C -0.096 4.096 25 C -0.314 4.314 26 C -0.152 4.152 27 N -0.161 5.161 28 C -0.165 4.165 29 H 0.092 0.908 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.085 0.915 34 H 0.143 0.857 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.251 0.749 38 H -0.192 1.192 39 H -0.204 1.204 40 H 0.164 0.836 41 H 0.241 0.759 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.084 0.916 46 H 0.214 0.786 47 H 0.185 0.815 48 H 0.217 0.783 49 H 0.109 0.891 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.682 5.112 -2.387 6.247 hybrid contribution -0.982 0.763 0.435 1.318 sum -3.663 5.875 -1.953 7.194 Atomic orbital electron populations 1.23512 0.76275 1.05949 1.02772 1.86360 1.23430 1.25630 1.85971 1.18933 0.90864 0.84963 0.88399 1.21473 1.02220 0.90610 1.18520 1.18877 0.90728 0.85226 0.88356 1.86124 1.21165 1.28187 1.86326 1.23516 0.76047 1.06191 1.02583 1.18840 0.90764 0.95449 1.11987 1.24743 1.12105 0.92066 0.89097 1.86462 1.82729 1.39205 1.28908 0.94121 0.74695 0.87936 0.76962 1.20845 0.99400 0.89829 0.93021 1.19152 0.91240 0.93651 1.19557 1.18008 0.82527 0.88326 0.76042 1.90815 1.72294 1.30006 1.50821 1.45814 1.05216 1.10638 1.75751 1.21363 0.88790 0.86164 1.02479 1.22866 0.92422 0.99826 0.98533 0.87888 1.23362 0.95406 0.98576 0.99614 1.22225 0.86564 0.92740 0.96324 0.87079 1.48576 1.08583 1.09336 1.47841 1.22977 1.01530 0.86029 0.99014 1.21897 0.93316 1.02647 1.13545 1.24400 1.01593 0.90781 0.98391 1.77343 0.90943 1.25169 1.22656 1.23528 0.92987 1.02743 0.97236 0.90770 0.86664 0.91032 0.81380 0.91539 0.85700 0.91049 0.90206 0.74924 1.19227 1.20374 0.83588 0.75881 0.90729 0.92072 0.86315 0.91612 0.78603 0.81537 0.78258 0.89108 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.30 -3.00 8.56 -68.76 -0.59 -3.59 16 3 C 0.22 1.87 6.70 22.82 0.15 2.02 16 4 C -0.31 -1.13 8.01 22.42 0.18 -0.95 16 5 C 0.22 1.02 6.67 22.60 0.15 1.17 16 6 O -0.31 -0.73 9.80 -90.41 -0.89 -1.62 16 7 C 0.01 -0.06 9.80 113.37 1.11 1.06 16 8 C -0.17 -0.78 5.30 -19.80 -0.10 -0.89 16 9 C -0.07 0.05 2.36 71.24 0.17 0.22 16 10 O -0.56 0.08 12.86 -148.98 -1.92 -1.84 16 11 Si 0.76 -4.32 30.20 68.60 2.07 -2.25 16 12 C -0.01 -0.06 8.14 22.50 0.18 0.12 16 13 C -0.23 -2.03 5.89 -20.00 -0.12 -2.15 16 14 C 0.56 5.92 7.76 86.63 0.67 6.59 16 15 O -0.56 -10.16 15.15 16.88 0.26 -9.90 16 16 N -0.72 -1.96 5.50 -466.49 -2.57 -4.53 16 17 C 0.14 0.04 5.51 86.38 0.48 0.52 16 18 C -0.12 0.50 3.33 -10.27 -0.03 0.46 16 19 H 0.10 -0.48 6.98 -2.39 -0.02 -0.49 16 20 C -0.13 0.32 7.44 31.12 0.23 0.55 16 21 C 0.12 -0.15 5.18 45.52 0.24 0.09 16 22 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 23 N -0.36 -1.34 3.79 -324.99 -1.23 -2.57 16 24 C 0.05 0.01 9.62 83.54 0.80 0.82 16 25 C -0.28 -0.43 10.80 21.99 0.24 -0.19 16 26 C 0.03 0.16 12.03 85.23 1.02 1.18 16 27 N -0.34 -3.09 12.58 -57.02 -0.72 -3.80 16 28 C -0.13 0.75 6.88 31.12 0.21 0.97 16 29 H 0.07 -0.30 7.66 -2.39 -0.02 -0.32 16 30 H 0.12 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.07 -0.25 7.66 -2.38 -0.02 -0.27 16 32 H 0.17 -0.39 4.50 -2.91 -0.01 -0.40 16 33 H 0.07 -0.43 7.65 -2.39 -0.02 -0.45 16 34 H 0.12 -1.12 8.14 -2.39 -0.02 -1.14 16 35 H 0.07 -0.55 7.65 -2.39 -0.02 -0.57 16 36 H 0.08 -0.19 7.82 -2.39 -0.02 -0.21 16 37 H 0.40 -4.22 8.74 -74.06 -0.65 -4.86 16 38 H -0.27 0.76 6.74 99.48 0.67 1.43 16 39 H -0.28 0.32 7.11 99.48 0.71 1.03 16 40 H 0.15 0.03 3.21 -2.91 -0.01 0.02 16 41 H 0.40 -0.84 6.49 -92.72 -0.60 -1.44 16 42 H 0.07 0.07 7.84 -2.39 -0.02 0.05 16 43 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.12 -0.58 8.10 -2.39 -0.02 -0.60 16 45 H 0.07 0.09 8.14 -2.38 -0.02 0.07 16 46 H 0.20 -1.32 6.67 -2.91 -0.02 -1.34 16 47 H 0.17 -0.53 8.06 -2.91 -0.02 -0.55 16 48 H 0.20 -0.14 8.06 -2.91 -0.02 -0.17 16 49 H 0.09 -0.67 6.97 -2.38 -0.02 -0.69 16 50 H 0.12 -0.95 7.90 -2.38 -0.02 -0.97 16 Total: 0.00 -30.42 406.14 0.88 -29.55 By element: Atomic # 1 Polarization: -11.91 SS G_CDS: -0.24 Total: -12.15 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 6.70 Total: 12.70 kcal Atomic # 7 Polarization: -6.38 SS G_CDS: -4.52 Total: -10.90 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -3.13 Total: -16.95 kcal Atomic # 14 Polarization: -4.32 SS G_CDS: 2.07 Total: -2.25 kcal Total: -30.42 0.88 -29.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.464 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds