Wall clock time and date at job start Sun Mar 7 2021 14:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86297 * 109.47322 * 2 1 4 4 C 1.50709 * 109.47195 * 239.99922 * 2 1 3 5 5 C 1.34842 * 125.89016 * 119.95583 * 4 2 1 6 6 C 1.40892 * 107.41810 * 179.80349 * 5 4 2 7 7 C 1.34853 * 107.41373 * 0.38707 * 6 5 4 8 8 C 1.50700 * 125.89110 * 179.88592 * 7 6 5 9 9 C 1.50704 * 109.47149 * 274.68498 * 8 7 6 10 10 O 1.21280 * 119.99679 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00152 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99727 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46743 * 179.97438 * 12 11 9 14 14 H 1.08994 * 112.85621 * 316.19927 * 13 12 11 15 15 C 1.54053 * 113.61639 * 87.50997 * 13 12 11 16 16 C 1.53781 * 86.98601 * 139.97520 * 15 13 12 17 17 H 1.08999 * 113.61373 * 219.97573 * 16 15 13 18 18 N 1.46502 * 113.61397 * 89.16131 * 16 15 13 19 19 C 1.34953 * 126.03718 * 345.86354 * 18 16 15 20 20 C 1.35312 * 107.74266 * 180.24977 * 19 18 16 21 21 C 1.39863 * 107.92527 * 359.64076 * 20 19 18 22 22 N 1.30837 * 108.19940 * 0.36269 * 21 20 19 23 23 C 1.53776 * 87.17473 * 334.56990 * 16 15 13 24 24 N 1.36336 * 108.21790 * 359.61456 * 7 6 5 25 25 H 0.96710 * 114.00106 * 60.00021 * 1 2 3 26 26 H 1.09005 * 109.47197 * 120.00198 * 2 1 3 27 27 H 1.48497 * 110.00050 * 59.99583 * 3 2 1 28 28 H 1.48503 * 110.00308 * 181.32139 * 3 2 1 29 29 H 1.08007 * 126.29247 * 0.06157 * 5 4 2 30 30 H 1.07994 * 126.29563 * 180.23666 * 6 5 4 31 31 H 1.08995 * 109.47582 * 154.68368 * 8 7 6 32 32 H 1.09007 * 109.47139 * 34.68205 * 8 7 6 33 33 H 0.97003 * 119.99948 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.46812 * 60.00457 * 12 11 9 35 35 H 1.08994 * 109.47225 * 300.00181 * 12 11 9 36 36 H 1.09001 * 113.61657 * 25.46737 * 15 13 12 37 37 H 1.09000 * 113.69409 * 254.49272 * 15 13 12 38 38 H 1.08002 * 126.12372 * 359.97438 * 19 18 16 39 39 H 1.08008 * 126.03698 * 179.76435 * 20 19 18 40 40 H 1.08001 * 125.90034 * 180.14354 * 21 20 19 41 41 H 1.09000 * 113.61686 * 140.02016 * 23 16 15 42 42 H 1.09002 * 113.61197 * 270.84760 * 23 16 15 43 43 H 0.97000 * 125.63822 * 180.27099 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7091 -0.1725 -2.1917 6 6 2.9482 -1.1759 -3.1515 7 6 2.3002 -2.2863 -2.7444 8 6 2.2748 -3.6090 -3.4662 9 6 1.1814 -3.5945 -4.5032 10 8 0.4905 -2.6075 -4.6420 11 7 0.9713 -4.6784 -5.2762 12 6 -0.0920 -4.6644 -6.2838 13 6 -0.1169 -6.0068 -7.0175 14 1 0.8785 -6.3620 -7.2842 15 6 -0.9895 -7.0718 -6.3264 16 6 -1.4549 -7.4858 -7.7324 17 1 -2.5170 -7.7241 -7.7882 18 7 -0.6091 -8.5085 -8.3531 19 6 0.6182 -8.8839 -7.9361 20 6 1.0629 -9.8464 -8.7769 21 6 0.0701 -10.0727 -9.7357 22 7 -0.9314 -9.2691 -9.4844 23 6 -1.1203 -6.0538 -8.1820 24 7 1.6770 -2.0077 -1.5643 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5614 2.4679 1.2084 28 1 3.5346 1.7703 -0.0322 29 1 3.0838 0.8401 -2.2187 30 1 3.5394 -1.0738 -4.0494 31 1 2.0867 -4.4097 -2.7510 32 1 3.2356 -3.7755 -3.9535 33 1 1.5237 -5.4680 -5.1648 34 1 0.0956 -3.8634 -6.9989 35 1 -1.0525 -4.4986 -5.7961 36 1 -1.7840 -6.6521 -5.7094 37 1 -0.4151 -7.8422 -5.8121 38 1 1.1520 -8.4842 -7.0865 39 1 2.0153 -10.3521 -8.7168 40 1 0.1226 -10.7849 -10.5458 41 1 -0.6513 -6.0030 -9.1647 42 1 -1.9509 -5.3566 -8.0727 43 1 1.1415 -2.6297 -1.0473 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_14644196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:57:37 Heat of formation + Delta-G solvation = 86.477307 kcal Electronic energy + Delta-G solvation = -25306.622033 eV Core-core repulsion = 21549.911907 eV Total energy + Delta-G solvation = -3756.710126 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.41867 -42.30174 -40.65811 -39.61878 -37.70163 -35.61935 -33.24790 -32.30682 -31.91226 -31.01884 -29.84857 -28.29246 -26.88517 -25.30930 -24.32149 -22.31836 -21.89093 -21.68403 -21.34345 -20.97873 -20.28252 -18.96645 -18.15993 -17.82459 -17.42391 -16.69171 -16.66447 -16.30355 -16.13883 -15.72405 -15.53823 -15.22905 -15.05862 -14.70928 -14.61022 -14.44397 -14.13231 -14.08339 -13.91900 -13.82879 -13.65005 -13.37422 -13.27132 -12.98830 -12.67466 -12.10845 -12.06336 -11.99090 -11.77305 -11.58497 -11.51629 -10.93381 -10.64604 -10.37344 -10.07661 -9.78914 -9.51531 -8.94684 -4.93315 0.95238 1.11304 1.30210 1.53251 1.66238 1.67824 1.89692 1.91964 1.93430 2.32311 2.52359 3.19356 3.32455 3.50153 3.56845 3.69218 3.71239 3.81267 3.92131 4.04106 4.09366 4.19935 4.23289 4.38416 4.39058 4.47813 4.50298 4.64081 4.65054 4.70539 4.72744 4.78120 4.80586 4.88196 4.91664 4.98608 5.13515 5.21605 5.26399 5.29855 5.46831 5.73958 6.00545 6.14229 6.18187 6.55361 6.64529 6.69101 6.76815 7.29671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.053 4.053 3 Si 0.799 3.201 4 C -0.021 4.021 5 C -0.203 4.203 6 C -0.202 4.202 7 C 0.033 3.967 8 C -0.067 4.067 9 C 0.510 3.490 10 O -0.577 6.577 11 N -0.716 5.716 12 C 0.135 3.865 13 C -0.109 4.109 14 H 0.110 0.890 15 C -0.122 4.122 16 C 0.119 3.881 17 H 0.105 0.895 18 N -0.360 5.360 19 C 0.056 3.944 20 C -0.290 4.290 21 C 0.031 3.969 22 N -0.344 5.344 23 C -0.136 4.136 24 N -0.536 5.536 25 H 0.395 0.605 26 H 0.108 0.892 27 H -0.293 1.293 28 H -0.284 1.284 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.418 0.582 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.206 0.794 39 H 0.165 0.835 40 H 0.197 0.803 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 -3.178 0.773 4.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.162 4.162 3 Si 0.703 3.297 4 C -0.135 4.135 5 C -0.228 4.228 6 C -0.226 4.226 7 C -0.081 4.081 8 C -0.107 4.107 9 C 0.296 3.704 10 O -0.455 6.455 11 N -0.369 5.369 12 C 0.011 3.989 13 C -0.128 4.128 14 H 0.128 0.872 15 C -0.161 4.161 16 C 0.017 3.983 17 H 0.123 0.877 18 N -0.143 5.143 19 C -0.090 4.090 20 C -0.319 4.319 21 C -0.154 4.154 22 N -0.166 5.166 23 C -0.175 4.175 24 N -0.132 5.132 25 H 0.245 0.755 26 H 0.125 0.875 27 H -0.221 1.221 28 H -0.211 1.211 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.223 0.777 39 H 0.183 0.817 40 H 0.214 0.786 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 1.689 -1.831 1.411 2.863 hybrid contribution 0.736 -1.522 0.306 1.718 sum 2.425 -3.353 1.717 4.480 Atomic orbital electron populations 1.86427 1.17601 1.82233 1.50549 1.24951 0.84866 1.11291 0.95134 0.92922 0.77823 0.74608 0.84372 1.20968 1.06211 0.85870 1.00425 1.20910 1.05025 1.00591 0.96299 1.20852 1.06854 0.93168 1.01757 1.19946 1.01160 0.97608 0.89372 1.20253 1.00062 0.93915 0.96518 1.20973 0.84812 0.82410 0.82162 1.90761 1.49819 1.34668 1.70295 1.45839 1.36688 1.17278 1.37141 1.21236 0.90911 0.96818 0.89953 1.22864 0.99840 0.94314 0.95759 0.87220 1.23537 1.00726 0.98356 0.93434 1.22270 0.94811 0.85972 0.95275 0.87734 1.48587 1.13934 1.29959 1.21780 1.23061 0.87037 0.97709 1.01177 1.21899 1.03732 1.06183 1.00063 1.24372 0.91765 0.98524 1.00715 1.77343 1.25469 1.10117 1.03654 1.23382 1.00421 0.95190 0.98543 1.41873 1.40930 1.11012 1.19364 0.75518 0.87493 1.22080 1.21097 0.83230 0.84193 0.85353 0.83991 0.74467 0.92672 0.91640 0.86327 0.88668 0.77698 0.81741 0.78581 0.91865 0.86800 0.74378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.15 12.88 -148.98 -1.92 -3.07 16 2 C -0.05 -0.06 3.08 71.24 0.22 0.16 16 3 Si 0.80 -0.41 30.58 68.60 2.10 1.69 16 4 C -0.02 -0.07 6.51 41.08 0.27 0.20 16 5 C -0.20 -0.84 9.37 22.14 0.21 -0.63 16 6 C -0.20 -0.88 10.77 22.14 0.24 -0.64 16 7 C 0.03 0.05 5.66 41.08 0.23 0.28 16 8 C -0.07 0.44 6.24 29.10 0.18 0.62 16 9 C 0.51 -0.61 7.82 87.66 0.69 0.08 16 10 O -0.58 -5.67 16.03 -3.03 -0.05 -5.71 16 11 N -0.72 5.59 5.56 -463.07 -2.57 3.02 16 12 C 0.13 -0.78 5.51 86.38 0.48 -0.31 16 13 C -0.11 1.02 3.32 -10.17 -0.03 0.99 16 14 H 0.11 -1.19 6.87 -2.39 -0.02 -1.20 16 15 C -0.12 1.24 6.90 31.21 0.22 1.46 16 16 C 0.12 -0.43 5.18 45.52 0.24 -0.20 16 17 H 0.10 -0.25 8.14 -2.39 -0.02 -0.27 16 18 N -0.36 -0.53 3.80 -324.99 -1.23 -1.76 16 19 C 0.06 -0.15 9.61 83.54 0.80 0.65 16 20 C -0.29 0.06 10.80 21.99 0.24 0.30 16 21 C 0.03 0.12 12.03 85.23 1.02 1.14 16 22 N -0.34 -2.71 12.58 -57.03 -0.72 -3.43 16 23 C -0.14 0.71 7.44 31.12 0.23 0.94 16 24 N -0.54 -0.90 6.07 -171.12 -1.04 -1.94 16 25 H 0.39 -1.63 8.70 -74.05 -0.64 -2.27 16 26 H 0.11 0.13 7.96 -2.38 -0.02 0.11 16 27 H -0.29 -1.67 7.11 99.48 0.71 -0.97 16 28 H -0.28 -1.24 7.11 99.48 0.71 -0.54 16 29 H 0.15 0.13 6.22 -2.91 -0.02 0.11 16 30 H 0.14 0.32 8.06 -2.91 -0.02 0.30 16 31 H 0.13 -1.58 8.14 -2.39 -0.02 -1.60 16 32 H 0.14 -1.63 8.14 -2.38 -0.02 -1.65 16 33 H 0.42 -6.20 8.47 -92.71 -0.79 -6.98 16 34 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.07 -0.25 7.85 -2.39 -0.02 -0.27 16 36 H 0.12 -1.35 7.90 -2.39 -0.02 -1.37 16 37 H 0.09 -1.15 7.05 -2.39 -0.02 -1.17 16 38 H 0.21 -2.32 6.62 -2.91 -0.02 -2.34 16 39 H 0.17 -0.75 8.06 -2.91 -0.02 -0.78 16 40 H 0.20 -0.25 8.06 -2.91 -0.02 -0.28 16 41 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 -0.79 8.10 -2.39 -0.02 -0.81 16 43 H 0.42 -0.75 8.96 -92.71 -0.83 -1.58 16 Total: 0.00 -28.52 361.54 -1.37 -29.89 By element: Atomic # 1 Polarization: -22.57 SS G_CDS: -1.16 Total: -23.73 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 5.22 Total: 5.04 kcal Atomic # 7 Polarization: 1.46 SS G_CDS: -5.56 Total: -4.10 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: -1.97 Total: -8.79 kcal Atomic # 14 Polarization: -0.41 SS G_CDS: 2.10 Total: 1.69 kcal Total: -28.52 -1.37 -29.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_14644196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.367 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds