Wall clock time and date at job start Sun Mar 7 2021 14:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47302 * 2 1 4 4 C 1.50705 * 109.47128 * 240.00095 * 2 1 3 5 5 C 1.38709 * 120.02687 * 285.02154 * 4 2 1 6 6 O 1.35895 * 120.05826 * 0.02562 * 5 4 2 7 7 C 1.42904 * 117.00129 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47033 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00105 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99611 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99563 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47119 * 179.97438 * 11 10 8 13 13 H 1.09005 * 112.84396 * 43.80977 * 12 11 10 14 14 C 1.53773 * 113.61713 * 175.00118 * 12 11 10 15 15 C 1.53777 * 87.08553 * 139.98570 * 14 12 11 16 16 H 1.08996 * 113.61895 * 220.02049 * 15 14 12 17 17 N 1.46503 * 113.61485 * 89.19638 * 15 14 12 18 18 C 1.34942 * 126.04037 * 275.00745 * 17 15 14 19 19 C 1.35314 * 107.74591 * 179.97438 * 18 17 15 20 20 C 1.39870 * 107.92325 * 359.97438 * 19 18 17 21 21 N 1.30844 * 108.19940 * 359.74115 * 20 19 18 22 22 C 1.53775 * 113.61958 * 272.50340 * 12 11 10 23 23 C 1.38759 * 119.88822 * 179.97438 * 5 4 2 24 24 C 1.38126 * 119.94094 * 0.02562 * 23 5 4 25 25 C 1.38290 * 120.05768 * 359.97408 * 24 23 5 26 26 C 1.38164 * 120.02624 * 104.99828 * 4 2 1 27 27 H 0.96705 * 113.99836 * 60.00232 * 1 2 3 28 28 H 1.08997 * 109.47395 * 120.00391 * 2 1 3 29 29 H 1.48502 * 109.99868 * 60.00019 * 3 2 1 30 30 H 1.48499 * 110.00235 * 181.31812 * 3 2 1 31 31 H 1.09001 * 109.47177 * 299.99686 * 7 6 5 32 32 H 1.09002 * 109.46778 * 59.99753 * 7 6 5 33 33 H 0.97003 * 120.00302 * 0.02562 * 10 8 7 34 34 H 1.09001 * 109.47382 * 300.00216 * 11 10 8 35 35 H 1.09002 * 109.47089 * 60.00599 * 11 10 8 36 36 H 1.09005 * 113.61827 * 254.53665 * 14 12 11 37 37 H 1.09007 * 113.61438 * 25.35150 * 14 12 11 38 38 H 1.08003 * 126.12803 * 359.97438 * 18 17 15 39 39 H 1.08003 * 126.03910 * 180.02562 * 19 18 17 40 40 H 1.07999 * 125.90053 * 180.02562 * 20 19 18 41 41 H 1.08998 * 113.61112 * 334.56896 * 22 12 11 42 42 H 1.09000 * 113.61800 * 105.46505 * 22 12 11 43 43 H 1.07998 * 120.02777 * 179.97438 * 23 5 4 44 44 H 1.08005 * 119.97091 * 180.02562 * 24 23 5 45 45 H 1.07995 * 119.94278 * 180.27458 * 25 24 23 46 46 H 1.07997 * 119.97398 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.8693 -2.0940 -1.3072 6 8 1.3550 -2.8106 -0.2734 7 6 1.3220 -4.2315 -0.4219 8 6 0.7243 -4.8521 0.8146 9 8 0.3627 -4.1470 1.7327 10 7 0.5916 -6.1905 0.8999 11 6 0.0111 -6.7938 2.1022 12 6 -0.0256 -8.3150 1.9426 13 1 0.8963 -8.7190 1.5241 14 6 -0.5066 -9.0551 3.2018 15 6 -1.2836 -9.9900 2.2600 16 1 -2.2731 -10.2585 2.6299 17 7 -0.5085 -11.1507 1.8145 18 6 0.3423 -11.1828 0.7675 19 6 0.8547 -12.4328 0.6907 20 6 0.2984 -13.1905 1.7265 21 7 -0.5145 -12.4213 2.4044 22 6 -1.2973 -8.8313 1.2490 23 6 2.3321 -2.7451 -2.4417 24 6 2.8538 -2.0144 -3.4914 25 6 2.9146 -0.6351 -3.4125 26 6 2.4537 0.0160 -2.2834 27 1 -0.3933 0.4417 -0.7651 28 1 1.7924 -0.5139 0.8899 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7703 -0.0321 31 1 0.7154 -4.4922 -1.2892 32 1 2.3361 -4.6058 -0.5620 33 1 0.8812 -6.7545 0.1657 34 1 0.6186 -6.5335 2.9689 35 1 -1.0028 -6.4192 2.2433 36 1 0.2944 -9.5531 3.7483 37 1 -1.1464 -8.4514 3.8455 38 1 0.5729 -10.3585 0.1089 39 1 1.5679 -12.7833 -0.0406 40 1 0.5075 -14.2295 1.9340 41 1 -2.1544 -8.1668 1.3580 42 1 -1.1348 -9.1485 0.2190 43 1 2.2852 -3.8223 -2.5037 44 1 3.2139 -2.5207 -4.3749 45 1 3.3188 -0.0653 -4.2361 46 1 2.5023 1.0932 -2.2241 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_2989392.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:57:50 Heat of formation + Delta-G solvation = 40.998447 kcal Electronic energy + Delta-G solvation = -28836.432773 eV Core-core repulsion = 24696.268114 eV Total energy + Delta-G solvation = -4140.164659 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.157 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.43050 -41.60672 -40.72563 -39.74528 -38.48346 -37.47456 -35.80220 -32.78058 -32.50870 -31.33629 -31.02386 -30.11349 -28.03114 -26.91285 -26.66853 -24.66356 -23.40017 -22.60311 -22.35384 -21.81720 -21.52952 -20.31112 -19.46970 -18.51925 -18.01223 -17.85471 -17.54192 -17.20317 -16.86090 -16.59504 -16.35262 -16.16641 -15.78453 -15.54237 -15.47845 -15.34207 -14.99108 -14.91184 -14.65576 -14.43757 -14.20768 -13.86788 -13.79231 -13.65143 -13.42063 -13.29116 -13.01690 -12.97282 -12.35976 -12.19134 -12.14592 -12.07310 -11.82107 -11.74929 -11.63762 -11.53451 -11.02637 -10.38962 -10.37919 -10.25593 -9.94455 -9.52770 -9.20286 -5.05749 0.25927 0.43425 0.94061 1.28641 1.40397 1.47818 1.51509 1.61869 1.92331 1.95285 2.57785 2.72980 3.15115 3.27745 3.48226 3.55512 3.58726 3.65510 3.76784 3.90885 3.91043 3.98413 4.02367 4.04715 4.13587 4.15283 4.32533 4.34669 4.37916 4.43306 4.54109 4.62584 4.66137 4.66720 4.69180 4.73296 4.84888 4.87909 4.95169 4.99348 5.10691 5.16534 5.29715 5.30771 5.40049 5.55137 5.72698 5.78377 6.16760 6.27085 6.44442 6.75540 6.81790 7.08649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.073 4.073 3 Si 0.794 3.206 4 C -0.172 4.172 5 C 0.125 3.875 6 O -0.316 6.316 7 C 0.037 3.963 8 C 0.510 3.490 9 O -0.574 6.574 10 N -0.706 5.706 11 C 0.134 3.866 12 C -0.109 4.109 13 H 0.112 0.888 14 C -0.137 4.137 15 C 0.120 3.880 16 H 0.106 0.894 17 N -0.361 5.361 18 C 0.056 3.944 19 C -0.289 4.289 20 C 0.031 3.969 21 N -0.344 5.344 22 C -0.122 4.122 23 C -0.213 4.213 24 C -0.076 4.076 25 C -0.154 4.154 26 C -0.079 4.079 27 H 0.391 0.609 28 H 0.079 0.921 29 H -0.304 1.304 30 H -0.282 1.282 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.422 0.578 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.207 0.793 39 H 0.165 0.835 40 H 0.197 0.803 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -0.939 -10.669 10.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.181 4.181 3 Si 0.699 3.301 4 C -0.173 4.173 5 C 0.080 3.920 6 O -0.229 6.229 7 C -0.041 4.041 8 C 0.296 3.704 9 O -0.452 6.452 10 N -0.361 5.361 11 C 0.010 3.990 12 C -0.128 4.128 13 H 0.130 0.870 14 C -0.176 4.176 15 C 0.018 3.982 16 H 0.124 0.876 17 N -0.143 5.143 18 C -0.090 4.090 19 C -0.318 4.318 20 C -0.154 4.154 21 N -0.166 5.166 22 C -0.160 4.160 23 C -0.231 4.231 24 C -0.094 4.094 25 C -0.172 4.172 26 C -0.096 4.096 27 H 0.240 0.760 28 H 0.096 0.904 29 H -0.233 1.233 30 H -0.209 1.209 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.224 0.776 39 H 0.183 0.817 40 H 0.214 0.786 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.172 0.828 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.654 0.056 -7.819 7.992 hybrid contribution 0.744 -1.414 -0.146 1.604 sum 2.397 -1.358 -7.965 8.428 Atomic orbital electron populations 1.86542 1.17699 1.82182 1.50009 1.25171 0.85143 1.11119 0.96693 0.94050 0.77568 0.73878 0.84588 1.19847 1.07033 0.91590 0.98836 1.19111 0.94316 0.91191 0.87421 1.86189 1.78035 1.18794 1.39875 1.22714 1.04391 0.79895 0.97135 1.20556 0.78450 0.83071 0.88286 1.90787 1.50323 1.62673 1.41436 1.45620 1.63747 1.05403 1.21312 1.21325 0.98796 0.91794 0.87037 1.22822 0.99641 0.92638 0.97700 0.87018 1.23385 1.00487 0.96972 0.96730 1.22245 0.94956 0.82325 0.98674 0.87629 1.48580 1.34284 1.08396 1.23030 1.23067 0.92938 1.00487 0.92513 1.21899 1.10322 0.94122 1.05487 1.24380 0.95322 1.01038 0.94636 1.77352 1.25032 0.90890 1.23307 1.23496 0.99039 0.94418 0.99071 1.21590 1.05692 1.01825 0.94033 1.21419 0.95473 0.94331 0.98181 1.21454 1.01883 0.95059 0.98808 1.21109 0.96205 1.00148 0.92175 0.76000 0.90383 1.23278 1.20881 0.85804 0.86111 0.74050 0.92542 0.91306 0.91823 0.86830 0.77634 0.81703 0.78581 0.86244 0.88379 0.82803 0.82849 0.82825 0.82633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.50 12.88 -148.98 -1.92 -6.42 16 2 C -0.07 -0.48 2.38 71.24 0.17 -0.31 16 3 Si 0.79 1.08 29.92 68.60 2.05 3.13 16 4 C -0.17 -0.67 5.27 -19.77 -0.10 -0.78 16 5 C 0.12 0.54 6.66 22.51 0.15 0.69 16 6 O -0.32 -2.52 9.00 -73.34 -0.66 -3.18 16 7 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 8 C 0.51 1.58 7.91 87.66 0.69 2.27 16 9 O -0.57 -9.18 16.50 16.01 0.26 -8.91 16 10 N -0.71 4.08 5.56 -463.05 -2.57 1.51 16 11 C 0.13 -0.56 5.51 86.38 0.48 -0.09 16 12 C -0.11 0.95 3.33 -10.27 -0.03 0.91 16 13 H 0.11 -1.17 6.98 -2.38 -0.02 -1.18 16 14 C -0.14 0.62 7.44 31.12 0.23 0.85 16 15 C 0.12 -0.40 5.18 45.52 0.24 -0.16 16 16 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 17 N -0.36 -0.58 3.79 -324.99 -1.23 -1.82 16 18 C 0.06 -0.15 9.63 83.54 0.80 0.65 16 19 C -0.29 0.06 10.80 21.99 0.24 0.30 16 20 C 0.03 0.12 12.03 85.24 1.03 1.14 16 21 N -0.34 -2.77 12.58 -57.02 -0.72 -3.49 16 22 C -0.12 1.19 6.88 31.12 0.21 1.40 16 23 C -0.21 0.50 9.04 22.37 0.20 0.70 16 24 C -0.08 0.35 10.04 22.26 0.22 0.57 16 25 C -0.15 0.65 10.04 22.28 0.22 0.87 16 26 C -0.08 0.14 8.66 22.25 0.19 0.34 16 27 H 0.39 -0.77 8.70 -74.05 -0.64 -1.41 16 28 H 0.08 0.99 7.83 -2.39 -0.02 0.97 16 29 H -0.30 -2.87 7.11 99.48 0.71 -2.17 16 30 H -0.28 -1.48 7.11 99.48 0.71 -0.78 16 31 H 0.12 -1.09 7.66 -2.39 -0.02 -1.11 16 32 H 0.12 -1.03 7.66 -2.39 -0.02 -1.05 16 33 H 0.42 -5.90 8.47 -92.71 -0.79 -6.68 16 34 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 35 H 0.07 -0.14 7.84 -2.39 -0.02 -0.16 16 36 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 37 H 0.11 -0.69 8.10 -2.38 -0.02 -0.71 16 38 H 0.21 -2.36 6.67 -2.91 -0.02 -2.38 16 39 H 0.17 -0.77 8.06 -2.91 -0.02 -0.79 16 40 H 0.20 -0.23 8.06 -2.91 -0.02 -0.26 16 41 H 0.12 -1.29 7.89 -2.39 -0.02 -1.31 16 42 H 0.10 -1.20 6.98 -2.39 -0.02 -1.22 16 43 H 0.15 -1.34 6.30 -2.91 -0.02 -1.35 16 44 H 0.15 -1.51 8.06 -2.91 -0.02 -1.54 16 45 H 0.15 -1.42 8.06 -2.91 -0.02 -1.45 16 46 H 0.16 -1.13 5.13 -2.91 -0.01 -1.14 16 Total: 0.00 -35.68 383.34 0.16 -35.52 By element: Atomic # 1 Polarization: -25.64 SS G_CDS: -0.37 Total: -26.01 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.31 Total: 9.67 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -4.52 Total: -3.80 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -2.31 Total: -18.51 kcal Atomic # 14 Polarization: 1.08 SS G_CDS: 2.05 Total: 3.13 kcal Total: -35.68 0.16 -35.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_2989392.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.522 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds