Wall clock time and date at job start Sun Mar 7 2021 14:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47165 * 2 1 4 4 C 1.50699 * 109.47033 * 120.00208 * 2 1 3 5 5 C 1.38250 * 119.97119 * 245.02274 * 4 2 1 6 6 C 1.38287 * 120.11178 * 179.97438 * 5 4 2 7 7 C 1.38128 * 120.05496 * 359.67816 * 6 5 4 8 8 C 1.38754 * 119.94249 * 0.59717 * 7 6 5 9 9 O 1.35898 * 120.05521 * 179.70167 * 8 7 6 10 10 C 1.42901 * 117.00033 * 359.72285 * 9 8 7 11 11 C 1.52996 * 109.47396 * 180.02562 * 10 9 8 12 12 C 1.52992 * 109.47231 * 179.97438 * 11 10 9 13 13 C 1.50706 * 109.47274 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99699 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47237 * 179.72043 * 16 15 13 18 18 H 1.08998 * 112.84967 * 316.19646 * 17 16 15 19 19 C 1.53789 * 113.61152 * 87.50111 * 17 16 15 20 20 C 1.53780 * 87.07735 * 139.98241 * 19 17 16 21 21 H 1.09004 * 113.61395 * 220.01775 * 20 19 17 22 22 N 1.46497 * 113.69220 * 89.12741 * 20 19 17 23 23 C 1.34951 * 126.03983 * 347.17778 * 22 20 19 24 24 C 1.35311 * 107.74447 * 179.83984 * 23 22 20 25 25 C 1.39861 * 107.92469 * 0.42250 * 24 23 22 26 26 N 1.30841 * 108.20215 * 359.73710 * 25 24 23 27 27 C 1.53781 * 87.08381 * 334.56357 * 20 19 17 28 28 C 1.38164 * 119.97699 * 64.99668 * 4 2 1 29 29 H 0.96702 * 113.99807 * 59.99931 * 1 2 3 30 30 H 1.08997 * 109.46947 * 239.99817 * 2 1 3 31 31 H 1.48502 * 110.00355 * 298.67825 * 3 2 1 32 32 H 1.48499 * 110.00453 * 59.99968 * 3 2 1 33 33 H 1.07995 * 119.94368 * 359.97419 * 5 4 2 34 34 H 1.08000 * 119.97151 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.02498 * 180.31644 * 7 6 5 36 36 H 1.08999 * 109.47180 * 59.99655 * 10 9 8 37 37 H 1.09010 * 109.47088 * 300.00579 * 10 9 8 38 38 H 1.09004 * 109.46699 * 59.99914 * 11 10 9 39 39 H 1.08993 * 109.47124 * 300.00065 * 11 10 9 40 40 H 1.09004 * 109.47116 * 60.00455 * 12 11 10 41 41 H 1.08998 * 109.47794 * 300.00366 * 12 11 10 42 42 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 43 43 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 44 44 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 45 45 H 1.09001 * 113.60999 * 254.52627 * 19 17 16 46 46 H 1.09003 * 113.61481 * 25.43474 * 19 17 16 47 47 H 1.07998 * 126.12030 * 0.02562 * 23 22 20 48 48 H 1.08003 * 126.03529 * 180.15875 * 24 23 22 49 49 H 1.08004 * 125.89957 * 179.71450 * 25 24 23 50 50 H 1.08997 * 113.61636 * 270.88696 * 27 20 19 51 51 H 1.08997 * 113.61300 * 139.97975 * 27 20 19 52 52 H 1.08002 * 120.02251 * 0.04413 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6383 -0.0116 2.1912 6 6 3.1002 -0.6605 3.3217 7 6 2.8502 -2.0077 3.4967 8 6 2.1459 -2.7126 2.5312 9 8 1.9039 -4.0394 2.6982 10 6 2.4093 -4.6461 3.8892 11 6 2.0422 -6.1313 3.9004 12 6 2.5838 -6.7810 5.1752 13 6 2.2227 -8.2441 5.1860 14 8 1.5944 -8.7203 4.2644 15 7 2.5979 -9.0233 6.2196 16 6 2.2473 -10.4457 6.2298 17 6 2.7944 -11.0968 7.5017 18 1 3.8144 -10.7879 7.7302 19 6 1.8371 -11.0041 8.7018 20 6 2.2530 -12.4444 9.0443 21 1 1.4263 -13.0687 9.3834 22 7 3.4244 -12.5264 9.9203 23 6 4.2631 -11.5130 10.2214 24 6 5.2089 -11.9958 11.0601 25 6 4.9447 -13.3529 11.2713 26 7 3.8751 -13.6721 10.5885 27 6 2.5855 -12.6195 7.5531 28 6 1.6845 -2.0595 1.3977 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5139 -0.8900 31 1 1.5880 2.4585 -1.2243 32 1 1.5615 2.4679 1.2084 33 1 2.8303 1.0428 2.0587 34 1 3.6526 -0.1125 4.0706 35 1 3.2067 -2.5129 4.3822 36 1 1.9725 -4.1568 4.7598 37 1 3.4939 -4.5400 3.9190 38 1 2.4795 -6.6202 3.0298 39 1 0.9578 -6.2377 3.8704 40 1 2.1469 -6.2922 6.0461 41 1 3.6682 -6.6746 5.2049 42 1 3.1040 -8.6432 6.9548 43 1 1.1629 -10.5527 6.2042 44 1 2.6811 -10.9331 5.3566 45 1 2.1433 -10.2719 9.4489 46 1 0.7891 -10.9080 8.4180 47 1 4.1904 -10.4978 9.8603 48 1 6.0262 -11.4335 11.4872 49 1 5.5237 -14.0219 11.8907 50 1 1.7421 -12.9649 6.9553 51 1 3.4958 -13.1913 7.3729 52 1 1.1324 -2.6051 0.6467 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:58:04 Heat of formation + Delta-G solvation = 26.807465 kcal Electronic energy + Delta-G solvation = -31330.018010 eV Core-core repulsion = 26878.162746 eV Total energy + Delta-G solvation = -4451.855264 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.188 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.41139 -41.27112 -40.85835 -39.73418 -39.10844 -37.47859 -35.70592 -34.88412 -32.58521 -32.44078 -31.27453 -31.01193 -29.47728 -27.71912 -26.90040 -26.74098 -24.64261 -23.66934 -23.22584 -22.32279 -21.75747 -21.72020 -21.27608 -20.27305 -18.93865 -18.59330 -18.18886 -17.84847 -17.46700 -17.31691 -17.14672 -16.98059 -16.62211 -16.19953 -15.85420 -15.74179 -15.62125 -15.52248 -15.07519 -14.93792 -14.53098 -14.48324 -14.34874 -14.20272 -13.88976 -13.83230 -13.61940 -13.51472 -13.31372 -13.25948 -13.18063 -12.92758 -12.67088 -12.38594 -12.20503 -12.10259 -11.92110 -11.78293 -11.65054 -11.60440 -11.57305 -11.52043 -10.92726 -10.54816 -10.37489 -10.10969 -9.90421 -9.51445 -9.23396 -4.91862 0.22099 0.41916 0.95346 1.28117 1.52888 1.61320 1.63558 1.91725 1.93659 1.98018 2.39217 2.64808 3.17959 3.31280 3.38753 3.54388 3.65726 3.70523 3.78058 3.86646 3.90269 3.92361 4.00915 4.04805 4.13014 4.16712 4.20321 4.27628 4.34529 4.36440 4.39579 4.43398 4.47656 4.53302 4.64242 4.66485 4.69465 4.69969 4.72463 4.77332 4.87648 4.91323 4.97520 4.99313 5.03249 5.13360 5.17411 5.21032 5.28898 5.39163 5.45332 5.48097 5.74060 5.74824 6.18105 6.44258 6.54841 6.55840 6.76840 7.26781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.096 4.096 3 Si 0.779 3.221 4 C -0.048 4.048 5 C -0.164 4.164 6 C -0.072 4.072 7 C -0.205 4.205 8 C 0.117 3.883 9 O -0.339 6.339 10 C 0.057 3.943 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.507 3.493 14 O -0.593 6.593 15 N -0.716 5.716 16 C 0.132 3.868 17 C -0.109 4.109 18 H 0.110 0.890 19 C -0.122 4.122 20 C 0.119 3.881 21 H 0.105 0.895 22 N -0.360 5.360 23 C 0.056 3.944 24 C -0.289 4.289 25 C 0.032 3.968 26 N -0.345 5.345 27 C -0.137 4.137 28 C -0.153 4.153 29 H 0.395 0.605 30 H 0.090 0.910 31 H -0.286 1.286 32 H -0.294 1.294 33 H 0.143 0.857 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.419 0.581 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.207 0.793 48 H 0.166 0.834 49 H 0.197 0.803 50 H 0.113 0.887 51 H 0.062 0.938 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 5.156 4.266 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.203 4.203 3 Si 0.683 3.317 4 C -0.048 4.048 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.071 3.929 9 O -0.253 6.253 10 C -0.017 4.017 11 C -0.141 4.141 12 C -0.166 4.166 13 C 0.295 3.705 14 O -0.473 6.473 15 N -0.369 5.369 16 C 0.008 3.992 17 C -0.128 4.128 18 H 0.128 0.872 19 C -0.160 4.160 20 C 0.017 3.983 21 H 0.123 0.877 22 N -0.143 5.143 23 C -0.090 4.090 24 C -0.318 4.318 25 C -0.153 4.153 26 N -0.167 5.167 27 C -0.176 4.176 28 C -0.172 4.172 29 H 0.245 0.755 30 H 0.108 0.892 31 H -0.213 1.213 32 H -0.221 1.221 33 H 0.161 0.839 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.101 0.899 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.257 0.743 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.137 0.863 47 H 0.223 0.777 48 H 0.183 0.817 49 H 0.214 0.786 50 H 0.131 0.869 51 H 0.081 0.919 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 4.609 4.226 3.658 7.244 hybrid contribution -0.585 -0.008 -0.131 0.599 sum 4.024 4.217 3.527 6.813 Atomic orbital electron populations 1.86556 1.18627 1.80859 1.50977 1.25209 0.84083 1.12741 0.98310 0.93935 0.90141 0.71146 0.76462 1.19264 0.97223 0.92635 0.95688 1.21180 1.01526 1.00521 0.94919 1.21296 0.97031 0.93682 0.97007 1.21613 1.03876 0.96221 1.00624 1.19167 0.95668 0.83108 0.94909 1.86049 1.74952 1.20283 1.44042 1.23018 1.00085 0.92934 0.85711 1.21157 1.01855 0.92574 0.98486 1.21532 1.05357 0.89946 0.99794 1.21187 0.78109 0.89978 0.81255 1.90747 1.42124 1.76689 1.37744 1.45870 1.57634 1.09648 1.23716 1.21261 1.00031 0.80558 0.97361 1.22814 1.00615 0.95287 0.94081 0.87197 1.23487 1.01739 0.93303 0.97460 1.22260 0.85382 1.01356 0.89302 0.87721 1.48575 1.22457 1.06547 1.36679 1.23068 0.91361 0.96049 0.98530 1.21896 1.05779 0.95509 1.08630 1.24372 0.94896 0.97309 0.98749 1.77348 1.16264 1.08938 1.14113 1.23386 1.03405 0.96268 0.94541 1.20339 1.04205 0.94586 0.98067 0.75488 0.89164 1.21340 1.22129 0.83928 0.82158 0.82551 0.89939 0.89559 0.92211 0.92362 0.85310 0.85315 0.74338 0.91612 0.92784 0.88527 0.86316 0.77662 0.81688 0.78583 0.86871 0.91891 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.83 12.81 -148.98 -1.91 -4.74 16 2 C -0.10 -0.18 2.79 71.24 0.20 0.02 16 3 Si 0.78 -1.18 29.85 68.60 2.05 0.87 16 4 C -0.05 -0.24 5.38 -19.88 -0.11 -0.34 16 5 C -0.16 -0.22 8.67 22.28 0.19 -0.03 16 6 C -0.07 0.09 10.04 22.26 0.22 0.31 16 7 C -0.20 -0.01 9.04 22.37 0.20 0.19 16 8 C 0.12 0.67 6.69 22.51 0.15 0.83 16 9 O -0.34 -2.13 10.14 -92.40 -0.94 -3.07 16 10 C 0.06 -0.16 4.74 71.98 0.34 0.18 16 11 C -0.10 0.07 4.87 30.59 0.15 0.22 16 12 C -0.13 1.04 5.70 29.85 0.17 1.21 16 13 C 0.51 -0.38 7.83 87.66 0.69 0.30 16 14 O -0.59 -6.48 15.98 -3.03 -0.05 -6.53 16 15 N -0.72 5.17 5.56 -463.05 -2.57 2.60 16 16 C 0.13 -0.67 5.51 86.38 0.48 -0.19 16 17 C -0.11 0.98 3.33 -10.26 -0.03 0.94 16 18 H 0.11 -1.15 6.96 -2.39 -0.02 -1.17 16 19 C -0.12 1.20 6.88 31.12 0.21 1.42 16 20 C 0.12 -0.40 5.18 45.52 0.24 -0.17 16 21 H 0.10 -0.23 8.14 -2.38 -0.02 -0.24 16 22 N -0.36 -0.55 3.79 -325.00 -1.23 -1.79 16 23 C 0.06 -0.15 9.62 83.54 0.80 0.65 16 24 C -0.29 0.10 10.80 21.99 0.24 0.34 16 25 C 0.03 0.12 12.03 85.23 1.02 1.14 16 26 N -0.35 -2.74 12.58 -57.02 -0.72 -3.46 16 27 C -0.14 0.65 7.44 31.12 0.23 0.88 16 28 C -0.15 -1.21 9.62 22.36 0.22 -0.99 16 29 H 0.39 -1.37 8.74 -74.06 -0.65 -2.01 16 30 H 0.09 -0.13 7.96 -2.39 -0.02 -0.14 16 31 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 32 H -0.29 -1.44 7.05 99.48 0.70 -0.74 16 33 H 0.14 -0.36 4.86 -2.91 -0.01 -0.37 16 34 H 0.16 -1.22 8.06 -2.91 -0.02 -1.25 16 35 H 0.16 -0.97 6.30 -2.91 -0.02 -0.99 16 36 H 0.08 -0.54 7.65 -2.39 -0.02 -0.56 16 37 H 0.09 -0.62 7.67 -2.38 -0.02 -0.64 16 38 H 0.06 0.23 8.10 -2.39 -0.02 0.22 16 39 H 0.06 0.24 8.10 -2.39 -0.02 0.22 16 40 H 0.13 -1.78 8.14 -2.39 -0.02 -1.80 16 41 H 0.13 -1.78 8.14 -2.39 -0.02 -1.80 16 42 H 0.42 -6.12 8.47 -92.70 -0.79 -6.90 16 43 H 0.07 -0.19 7.84 -2.39 -0.02 -0.21 16 44 H 0.05 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.10 -1.17 7.00 -2.39 -0.02 -1.19 16 46 H 0.12 -1.30 7.90 -2.39 -0.02 -1.32 16 47 H 0.21 -2.35 6.66 -2.91 -0.02 -2.37 16 48 H 0.17 -0.80 8.06 -2.91 -0.02 -0.82 16 49 H 0.20 -0.27 8.06 -2.91 -0.02 -0.29 16 50 H 0.11 -0.72 8.10 -2.39 -0.02 -0.74 16 51 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 52 H 0.12 1.10 8.06 -2.91 -0.02 1.07 16 Total: 0.00 -33.13 426.29 -0.21 -33.34 By element: Atomic # 1 Polarization: -23.70 SS G_CDS: -0.45 Total: -24.15 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.61 Total: 6.91 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -4.52 Total: -2.65 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -2.89 Total: -14.33 kcal Atomic # 14 Polarization: -1.18 SS G_CDS: 2.05 Total: 0.87 kcal Total: -33.13 -0.21 -33.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.150 kcal (2) G-P(sol) polarization free energy of solvation -33.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds