Wall clock time and date at job start Sun Mar 7 2021 14:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86291 * 109.47342 * 2 1 4 4 C 1.50705 * 109.47145 * 239.99839 * 2 1 3 5 5 C 1.35447 * 125.56612 * 119.97993 * 4 2 1 6 6 C 1.39833 * 107.86968 * 179.76212 * 5 4 2 7 7 C 1.37875 * 107.07983 * 0.41174 * 6 5 4 8 8 C 1.46679 * 126.23037 * 179.84563 * 7 6 5 9 9 O 1.21689 * 120.00118 * 359.69258 * 8 7 6 10 10 N 1.34783 * 120.00013 * 179.69340 * 8 7 6 11 11 C 1.46498 * 120.00214 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47070 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.91116 * 43.74800 * 12 11 10 14 14 C 1.53787 * 113.61251 * 175.00109 * 12 11 10 15 15 C 1.53779 * 87.07963 * 139.97890 * 14 12 11 16 16 H 1.09007 * 113.61383 * 220.01369 * 15 14 12 17 17 N 1.46506 * 113.61276 * 89.20243 * 15 14 12 18 18 C 1.34952 * 126.03298 * 274.70962 * 17 15 14 19 19 C 1.35311 * 107.74382 * 179.84320 * 18 17 15 20 20 C 1.39873 * 107.91934 * 0.42554 * 19 18 17 21 21 N 1.30835 * 108.20206 * 359.73758 * 20 19 18 22 22 C 1.53779 * 87.08402 * 334.56577 * 15 14 12 23 23 N 1.35539 * 125.56334 * 299.99880 * 4 2 1 24 24 H 0.96702 * 114.00082 * 60.00037 * 1 2 3 25 25 H 1.09000 * 109.47213 * 120.00421 * 2 1 3 26 26 H 1.48499 * 110.00260 * 59.99812 * 3 2 1 27 27 H 1.48504 * 110.00182 * 181.32113 * 3 2 1 28 28 H 1.08003 * 126.06454 * 0.02562 * 5 4 2 29 29 H 1.07994 * 126.46278 * 180.26109 * 6 5 4 30 30 H 0.96997 * 119.99499 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.46965 * 59.99571 * 11 10 8 32 32 H 1.09003 * 109.46664 * 299.99726 * 11 10 8 33 33 H 1.08997 * 113.61028 * 254.52850 * 14 12 11 34 34 H 1.08998 * 113.61447 * 25.34385 * 14 12 11 35 35 H 1.07997 * 126.12492 * 0.02562 * 18 17 15 36 36 H 1.08000 * 126.04363 * 180.16185 * 19 18 17 37 37 H 1.08003 * 125.89293 * 179.72132 * 20 19 18 38 38 H 1.09002 * 113.61557 * 270.88569 * 22 15 14 39 39 H 1.09004 * 113.61501 * 139.97990 * 22 15 14 40 40 H 0.97000 * 125.67721 * 0.02562 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9313 -0.7105 -1.2305 5 6 2.7130 -0.1636 -2.1920 6 6 2.9613 -1.1475 -3.1541 7 6 2.3018 -2.2877 -2.7469 8 6 2.2783 -3.5740 -3.4515 9 8 2.8764 -3.7026 -4.5034 10 7 1.5941 -4.6135 -2.9338 11 6 1.5710 -5.8983 -3.6372 12 6 0.7311 -6.9000 -2.8421 13 1 -0.1975 -6.4709 -2.4659 14 6 0.5416 -8.2488 -3.5561 15 6 0.7289 -8.9132 -2.1820 16 1 1.3254 -9.8250 -2.2155 17 7 -0.5204 -9.0779 -1.4347 18 6 -1.1003 -8.1511 -0.6435 19 6 -2.2354 -8.6897 -0.1412 20 6 -2.3482 -9.9936 -0.6347 21 7 -1.3206 -10.2274 -1.4102 22 6 1.5320 -7.6662 -1.7760 23 7 1.6744 -2.0009 -1.5558 24 1 -0.3933 0.4417 -0.7651 25 1 1.7923 -0.5139 0.8899 26 1 1.5615 2.4679 1.2084 27 1 3.5346 1.7702 -0.0322 28 1 3.0828 0.8510 -2.2100 29 1 3.5554 -1.0347 -4.0489 30 1 1.1170 -4.5108 -2.0955 31 1 2.5885 -6.2762 -3.7370 32 1 1.1350 -5.7628 -4.6270 33 1 -0.4555 -8.3849 -3.9747 34 1 1.3344 -8.4817 -4.2670 35 1 -0.7269 -7.1566 -0.4488 36 1 -2.9294 -8.2009 0.5266 37 1 -3.1456 -10.6876 -0.4136 38 1 2.5963 -7.7405 -1.9992 39 1 1.3343 -7.3320 -0.7575 40 1 1.1371 -2.6191 -1.0361 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16946172_6580494.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 14:59:10 Heat of formation + Delta-G solvation = 89.045493 kcal Electronic energy + Delta-G solvation = -23847.014938 eV Core-core repulsion = 20245.953796 eV Total energy + Delta-G solvation = -3601.061142 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.55439 -42.40203 -40.57149 -39.61754 -37.65772 -35.85777 -32.68685 -32.09765 -31.42999 -31.03932 -29.06296 -26.95120 -26.64892 -24.67954 -23.04226 -22.38407 -21.79727 -21.52022 -21.12394 -20.42187 -19.76653 -18.13808 -17.89821 -17.27605 -16.82778 -16.62167 -16.26189 -16.04329 -15.64950 -15.56145 -15.19012 -15.08944 -14.90408 -14.53020 -14.38898 -14.29766 -13.98785 -13.85625 -13.67906 -13.59401 -13.31576 -12.99731 -12.19734 -12.16485 -12.05850 -11.84822 -11.65722 -11.60474 -11.27846 -10.66081 -10.41007 -10.32399 -10.06616 -9.55233 -9.26321 -4.89523 0.29944 0.91367 1.24310 1.49365 1.54888 1.73741 1.89827 1.90649 1.99642 2.22533 2.27397 3.13314 3.26826 3.48019 3.50711 3.60192 3.61565 3.82737 3.87825 4.00480 4.11586 4.26531 4.30984 4.34953 4.42177 4.46823 4.61071 4.64937 4.67141 4.72394 4.83598 4.84909 4.93469 4.96628 5.08290 5.12134 5.14224 5.27189 5.58842 5.70600 5.79538 6.13855 6.27144 6.45197 6.68673 6.73216 7.01918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.052 4.052 3 Si 0.800 3.200 4 C 0.030 3.970 5 C -0.207 4.207 6 C -0.119 4.119 7 C -0.064 4.064 8 C 0.588 3.412 9 O -0.572 6.572 10 N -0.715 5.715 11 C 0.134 3.866 12 C -0.112 4.112 13 H 0.107 0.893 14 C -0.133 4.133 15 C 0.120 3.880 16 H 0.107 0.893 17 N -0.360 5.360 18 C 0.054 3.946 19 C -0.289 4.289 20 C 0.032 3.968 21 N -0.342 5.342 22 C -0.124 4.124 23 N -0.511 5.511 24 H 0.399 0.601 25 H 0.118 0.882 26 H -0.296 1.296 27 H -0.286 1.286 28 H 0.167 0.833 29 H 0.145 0.855 30 H 0.410 0.590 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.203 0.797 36 H 0.165 0.835 37 H 0.198 0.802 38 H 0.121 0.879 39 H 0.093 0.907 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 3.739 3.017 5.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.162 4.162 3 Si 0.705 3.295 4 C -0.089 4.089 5 C -0.230 4.230 6 C -0.146 4.146 7 C -0.178 4.178 8 C 0.376 3.624 9 O -0.451 6.451 10 N -0.366 5.366 11 C 0.010 3.990 12 C -0.131 4.131 13 H 0.125 0.875 14 C -0.172 4.172 15 C 0.018 3.982 16 H 0.125 0.875 17 N -0.143 5.143 18 C -0.092 4.092 19 C -0.318 4.318 20 C -0.153 4.153 21 N -0.163 5.163 22 C -0.163 4.163 23 N -0.108 5.108 24 H 0.249 0.751 25 H 0.135 0.865 26 H -0.224 1.224 27 H -0.213 1.213 28 H 0.184 0.816 29 H 0.162 0.838 30 H 0.246 0.754 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.220 0.780 36 H 0.182 0.818 37 H 0.215 0.785 38 H 0.139 0.861 39 H 0.111 0.889 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -0.281 2.883 2.459 3.800 hybrid contribution -0.823 -0.601 1.106 1.504 sum -1.104 2.281 3.565 4.375 Atomic orbital electron populations 1.86473 1.16776 1.82105 1.50828 1.25002 0.85409 1.11010 0.94796 0.92978 0.77859 0.74038 0.84637 1.21326 1.03006 0.85077 0.99498 1.20939 1.05280 1.01179 0.95650 1.21493 1.00818 0.91587 1.00680 1.20292 1.08950 0.96324 0.92199 1.17224 0.78515 0.82740 0.83910 1.90856 1.46351 1.83750 1.24142 1.45722 1.52662 1.11344 1.26877 1.21373 1.00575 0.81489 0.95524 1.22828 0.99356 0.93980 0.96898 0.87488 1.23372 1.03750 0.94206 0.95895 1.22256 0.81972 1.00974 0.93010 0.87490 1.48584 1.19381 1.09689 1.36597 1.23015 0.94765 0.97192 0.94205 1.21893 1.02202 0.96507 1.11186 1.24382 0.97239 0.98010 0.95679 1.77343 1.06500 1.07850 1.24648 1.23513 1.00489 0.91859 1.00402 1.41858 1.39733 1.11281 1.17947 0.75053 0.86490 1.22382 1.21284 0.81597 0.83756 0.75441 0.90814 0.91878 0.91720 0.86436 0.78001 0.81779 0.78478 0.86099 0.88893 0.73213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 3.35 12.88 -148.98 -1.92 1.44 16 2 C -0.05 0.32 3.08 71.24 0.22 0.54 16 3 Si 0.80 -4.88 30.54 68.60 2.10 -2.79 16 4 C 0.03 -0.12 6.47 41.34 0.27 0.15 16 5 C -0.21 0.37 9.32 22.01 0.21 0.58 16 6 C -0.12 -0.32 10.65 22.57 0.24 -0.08 16 7 C -0.06 -0.09 7.06 40.35 0.28 0.20 16 8 C 0.59 2.19 7.79 86.45 0.67 2.87 16 9 O -0.57 -7.32 16.88 -4.31 -0.07 -7.39 16 10 N -0.71 3.15 5.55 -467.08 -2.59 0.56 16 11 C 0.13 -0.61 5.51 86.38 0.48 -0.14 16 12 C -0.11 0.94 3.34 -10.27 -0.03 0.91 16 13 H 0.11 -1.02 7.00 -2.39 -0.02 -1.04 16 14 C -0.13 0.67 7.44 31.12 0.23 0.90 16 15 C 0.12 -0.40 5.18 45.52 0.24 -0.16 16 16 H 0.11 -0.25 8.14 -2.38 -0.02 -0.27 16 17 N -0.36 -0.67 3.79 -324.98 -1.23 -1.90 16 18 C 0.05 -0.11 9.63 83.54 0.80 0.70 16 19 C -0.29 -0.09 10.80 21.99 0.24 0.15 16 20 C 0.03 0.13 12.03 85.24 1.03 1.15 16 21 N -0.34 -2.76 12.58 -57.02 -0.72 -3.48 16 22 C -0.12 1.16 6.88 31.12 0.21 1.37 16 23 N -0.51 2.35 5.99 -171.93 -1.03 1.31 16 24 H 0.40 -5.18 8.70 -74.06 -0.64 -5.82 16 25 H 0.12 -0.73 7.96 -2.39 -0.02 -0.74 16 26 H -0.30 -0.36 7.11 99.48 0.71 0.35 16 27 H -0.29 0.11 7.11 99.48 0.71 0.82 16 28 H 0.17 -0.97 6.17 -2.91 -0.02 -0.98 16 29 H 0.14 0.52 8.06 -2.91 -0.02 0.50 16 30 H 0.41 -4.42 7.60 -92.71 -0.70 -5.12 16 31 H 0.07 -0.24 7.84 -2.39 -0.02 -0.26 16 32 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.12 -0.84 8.10 -2.39 -0.02 -0.86 16 35 H 0.20 -2.07 6.68 -2.91 -0.02 -2.09 16 36 H 0.16 -0.65 8.06 -2.91 -0.02 -0.68 16 37 H 0.20 -0.22 8.06 -2.91 -0.02 -0.25 16 38 H 0.12 -1.29 7.90 -2.39 -0.02 -1.31 16 39 H 0.09 -1.03 6.97 -2.39 -0.02 -1.05 16 40 H 0.43 -4.32 8.19 -92.71 -0.76 -5.08 16 Total: 0.00 -25.84 339.30 -1.36 -27.20 By element: Atomic # 1 Polarization: -23.10 SS G_CDS: -0.97 Total: -24.07 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 5.08 Total: 9.12 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -5.57 Total: -3.51 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -1.99 Total: -5.96 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.10 Total: -2.79 kcal Total: -25.84 -1.36 -27.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16946172_6580494.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.244 kcal (2) G-P(sol) polarization free energy of solvation -25.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds