Wall clock time and date at job start Sun Mar 7 2021 12:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47377 * 2 1 4 4 C 1.50698 * 109.46997 * 240.00281 * 2 1 3 5 5 C 1.36459 * 120.29718 * 240.02513 * 4 2 1 6 6 C 1.40090 * 119.25660 * 180.02562 * 5 4 2 7 7 C 1.40852 * 132.86662 * 179.97438 * 6 5 4 8 8 C 1.46571 * 126.57871 * 0.02562 * 7 6 5 9 9 O 1.21723 * 119.99988 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99979 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27964 * 10 8 7 12 12 H 1.09002 * 112.85447 * 23.52517 * 11 10 8 13 13 C 1.53782 * 113.61542 * 154.72141 * 11 10 8 14 14 C 1.53779 * 87.08038 * 89.11161 * 13 11 10 15 15 H 1.09003 * 113.61747 * 270.88529 * 14 13 11 16 16 C 1.50707 * 113.61537 * 140.06402 * 14 13 11 17 17 N 1.30501 * 125.64574 * 95.02183 * 16 14 13 18 18 C 1.34129 * 109.24916 * 180.02562 * 17 16 14 19 19 C 1.34668 * 108.02703 * 0.02562 * 18 17 16 20 20 N 1.35037 * 125.65195 * 274.72655 * 16 14 13 21 21 C 1.53778 * 113.61220 * 252.21874 * 11 10 8 22 22 C 1.40548 * 106.84188 * 180.27674 * 7 6 5 23 23 N 1.30747 * 108.74433 * 359.58600 * 22 7 6 24 24 N 1.36575 * 120.23011 * 359.97438 * 6 5 4 25 25 C 1.36238 * 120.08062 * 0.02562 * 24 6 5 26 26 C 1.35191 * 120.70719 * 359.97438 * 25 24 6 27 27 H 0.96699 * 113.99635 * 299.99827 * 1 2 3 28 28 H 1.08997 * 109.47440 * 120.00551 * 2 1 3 29 29 H 1.48496 * 109.99973 * 178.67932 * 3 2 1 30 30 H 1.48503 * 110.00016 * 300.00521 * 3 2 1 31 31 H 1.08002 * 120.36784 * 359.97438 * 5 4 2 32 32 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 33 33 H 1.08999 * 113.61850 * 203.66149 * 13 11 10 34 34 H 1.08997 * 113.61469 * 334.56635 * 13 11 10 35 35 H 1.08009 * 125.98432 * 180.02562 * 18 17 16 36 36 H 1.07995 * 126.59280 * 180.02562 * 19 18 17 37 37 H 0.97006 * 126.39443 * 359.97438 * 20 16 14 38 38 H 1.08998 * 113.61637 * 25.42993 * 21 11 10 39 39 H 1.08999 * 113.61924 * 156.33648 * 21 11 10 40 40 H 1.08003 * 125.62802 * 179.75524 * 22 7 6 41 41 H 1.08006 * 119.64566 * 179.97438 * 25 24 6 42 42 H 1.08005 * 119.83729 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 2.7157 -1.8207 -1.1124 6 6 3.1711 -2.4636 -2.2708 7 6 3.9752 -3.6005 -2.4825 8 6 4.5751 -4.4506 -1.4502 9 8 4.3946 -4.1980 -0.2732 10 7 5.3266 -5.5119 -1.8041 11 6 5.9211 -6.3652 -0.7723 12 1 5.3882 -6.3151 0.1773 13 6 6.2013 -7.8010 -1.2463 14 6 7.5815 -7.2977 -1.7009 15 1 7.5930 -6.9178 -2.7226 16 6 8.6995 -8.2701 -1.4255 17 7 9.1735 -9.1434 -2.2715 18 6 10.1599 -9.8373 -1.6845 19 6 10.3021 -9.3770 -0.4270 20 7 9.3804 -8.3782 -0.2644 21 6 7.4436 -6.1969 -0.6359 22 6 4.0967 -3.7600 -3.8736 23 7 3.4196 -2.8112 -4.4660 24 7 2.8314 -1.9823 -3.5030 25 6 2.0478 -0.8731 -3.6106 26 6 1.5970 -0.2366 -2.5064 27 1 -0.3933 0.4417 0.7651 28 1 1.7924 -0.5139 0.8899 29 1 3.5346 1.7702 0.0322 30 1 1.5615 2.4679 -1.2084 31 1 2.9832 -2.1990 -0.1368 32 1 5.4701 -5.7134 -2.7420 33 1 6.2470 -8.5276 -0.4352 34 1 5.5613 -8.1222 -2.0681 35 1 10.7387 -10.6270 -2.1406 36 1 11.0111 -9.7250 0.3096 37 1 9.2404 -7.8489 0.5364 38 1 7.8065 -5.2232 -0.9649 39 1 7.8289 -6.4850 0.3422 40 1 4.6548 -4.5394 -4.3712 41 1 1.7838 -0.4984 -4.5886 42 1 0.9762 0.6414 -2.6081 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_11618758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:27:14 Heat of formation + Delta-G solvation = 130.419786 kcal Electronic energy + Delta-G solvation = -28020.057110 eV Core-core repulsion = 23970.685759 eV Total energy + Delta-G solvation = -4049.371351 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.42076 -43.08838 -41.02103 -39.38501 -38.96639 -37.27725 -34.59324 -34.22439 -33.43391 -32.27329 -30.90410 -30.08889 -27.44648 -26.80453 -26.26420 -25.00895 -23.87082 -23.07481 -22.50930 -21.75805 -21.40881 -20.45485 -19.38829 -18.92042 -18.38233 -17.98172 -17.59684 -17.09671 -17.02377 -16.72005 -16.21689 -15.96115 -15.81126 -15.57703 -15.54457 -15.34874 -14.98787 -14.60010 -14.55156 -14.40745 -14.30002 -13.94691 -13.58631 -13.41841 -13.40890 -13.10053 -12.60348 -12.48059 -12.18615 -11.98594 -11.87470 -11.71860 -11.49842 -11.06034 -11.03619 -11.01216 -10.84854 -10.24006 -10.15144 -9.34449 -8.91101 -5.01530 -0.68919 -0.24651 0.90647 0.93722 1.09945 1.22600 1.63943 1.90833 1.96981 2.08193 2.12385 2.24045 2.38676 2.95138 3.10010 3.30164 3.39200 3.41060 3.59991 3.62472 3.70035 3.78774 3.81419 3.90418 4.09081 4.13078 4.24710 4.26580 4.31912 4.47965 4.53192 4.57666 4.61973 4.65048 4.66404 4.84031 4.89562 4.97415 5.00204 5.03503 5.08016 5.16093 5.17980 5.52812 5.55269 5.79422 6.18788 6.48872 6.53008 6.86022 7.13642 7.22243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.082 4.082 3 Si 0.803 3.197 4 C -0.032 4.032 5 C -0.119 4.119 6 C 0.148 3.852 7 C -0.337 4.337 8 C 0.605 3.395 9 O -0.586 6.586 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.097 0.903 13 C -0.122 4.122 14 C -0.023 4.023 15 H 0.122 0.878 16 C 0.210 3.790 17 N -0.531 5.531 18 C -0.064 4.064 19 C -0.045 4.045 20 N -0.558 5.558 21 C -0.140 4.140 22 C 0.132 3.868 23 N -0.338 5.338 24 N -0.275 5.275 25 C 0.109 3.891 26 C -0.151 4.151 27 H 0.409 0.591 28 H 0.093 0.907 29 H -0.305 1.305 30 H -0.274 1.274 31 H 0.157 0.843 32 H 0.414 0.586 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.209 0.791 37 H 0.431 0.569 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.238 0.762 41 H 0.205 0.795 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 3.939 4.606 6.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.190 4.190 3 Si 0.705 3.295 4 C -0.038 4.038 5 C -0.138 4.138 6 C 0.027 3.973 7 C -0.351 4.351 8 C 0.395 3.605 9 O -0.467 6.467 10 N -0.348 5.348 11 C 0.021 3.979 12 H 0.115 0.885 13 C -0.161 4.161 14 C -0.043 4.043 15 H 0.140 0.860 16 C -0.054 4.054 17 N -0.252 5.252 18 C -0.211 4.211 19 C -0.179 4.179 20 N -0.163 5.163 21 C -0.180 4.180 22 C -0.049 4.049 23 N -0.159 5.159 24 N -0.039 5.039 25 C -0.016 4.016 26 C -0.172 4.172 27 H 0.261 0.739 28 H 0.111 0.889 29 H -0.233 1.233 30 H -0.200 1.200 31 H 0.175 0.825 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.194 0.806 36 H 0.225 0.775 37 H 0.272 0.728 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.254 0.746 41 H 0.222 0.778 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.230 4.628 2.387 5.350 hybrid contribution 0.927 -0.942 1.120 1.732 sum -0.302 3.685 3.507 5.096 Atomic orbital electron populations 1.86426 1.16030 1.82609 1.51681 1.24881 0.86814 1.11423 0.95915 0.94250 0.76989 0.72854 0.85371 1.19874 0.94838 0.93121 0.95960 1.20714 1.00049 0.95168 0.97894 1.19566 0.96180 0.94828 0.86697 1.19699 1.17000 1.04080 0.94351 1.16893 0.77044 0.79827 0.86752 1.90752 1.63192 1.72844 1.19930 1.45223 1.51456 1.27625 1.10518 1.21711 0.93479 0.90179 0.92536 0.88514 1.23337 0.94689 0.95494 1.02565 1.21133 0.89354 0.92298 1.01511 0.86010 1.23282 0.98818 1.00096 0.83233 1.70179 1.12973 1.09305 1.32698 1.22748 1.00305 1.04264 0.93750 1.23279 0.98928 0.94894 1.00825 1.43281 1.28337 1.29825 1.14810 1.23498 0.96243 0.98949 0.99280 1.24675 0.93303 0.95676 0.91228 1.77585 1.19363 1.07424 1.11478 1.46305 1.32502 1.19513 1.05568 1.22173 0.91476 0.84637 1.03361 1.21160 1.02871 1.03140 0.90051 0.73881 0.88873 1.23270 1.20021 0.82534 0.74888 0.88284 0.89123 0.80572 0.77476 0.72793 0.90239 0.88114 0.74610 0.77838 0.80068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.07 12.76 -148.98 -1.90 0.17 16 2 C -0.08 0.24 2.81 71.24 0.20 0.44 16 3 Si 0.80 -4.20 31.96 68.60 2.19 -2.01 16 4 C -0.03 -0.10 4.53 -19.82 -0.09 -0.19 16 5 C -0.12 -0.86 9.35 22.30 0.21 -0.65 16 6 C 0.15 1.34 6.76 39.49 0.27 1.60 16 7 C -0.34 -2.29 6.17 -19.90 -0.12 -2.42 16 8 C 0.60 4.18 7.78 86.42 0.67 4.85 16 9 O -0.59 -8.01 15.30 -4.42 -0.07 -8.08 16 10 N -0.70 0.58 5.25 -444.08 -2.33 -1.75 16 11 C 0.13 -0.23 4.33 45.52 0.20 -0.03 16 12 H 0.10 0.16 7.46 -2.39 -0.02 0.14 16 13 C -0.12 0.45 7.38 31.12 0.23 0.68 16 14 C -0.02 0.05 4.16 -11.01 -0.05 0.01 16 15 H 0.12 -0.38 8.14 -2.39 -0.02 -0.40 16 16 C 0.21 0.62 7.37 138.13 1.02 1.63 16 17 N -0.53 -4.87 11.25 -188.12 -2.12 -6.98 16 18 C -0.06 -0.34 11.87 83.52 0.99 0.65 16 19 C -0.04 0.02 12.04 83.09 1.00 1.02 16 20 N -0.56 0.87 5.94 -186.27 -1.11 -0.24 16 21 C -0.14 0.56 7.35 31.12 0.23 0.79 16 22 C 0.13 0.32 11.44 85.42 0.98 1.30 16 23 N -0.34 -2.41 12.57 -56.62 -0.71 -3.12 16 24 N -0.27 -2.00 3.86 -187.28 -0.72 -2.72 16 25 C 0.11 0.20 11.17 83.31 0.93 1.13 16 26 C -0.15 -0.13 8.67 22.03 0.19 0.06 16 27 H 0.41 -5.81 8.74 -74.06 -0.65 -6.45 16 28 H 0.09 -0.48 7.71 -2.39 -0.02 -0.50 16 29 H -0.30 -0.92 7.11 99.48 0.71 -0.21 16 30 H -0.27 0.27 7.07 99.48 0.70 0.98 16 31 H 0.16 1.22 7.01 -2.91 -0.02 1.20 16 32 H 0.41 -2.68 7.62 -92.71 -0.71 -3.39 16 33 H 0.10 -0.36 8.09 -2.39 -0.02 -0.38 16 34 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.18 0.36 8.06 -2.91 -0.02 0.33 16 36 H 0.21 -1.58 8.06 -2.91 -0.02 -1.60 16 37 H 0.43 -3.26 7.54 -92.70 -0.70 -3.96 16 38 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 39 H 0.10 -0.70 6.65 -2.39 -0.02 -0.72 16 40 H 0.24 -1.80 7.46 -2.91 -0.02 -1.82 16 41 H 0.20 -0.96 8.06 -2.91 -0.02 -0.99 16 42 H 0.18 -0.68 7.52 -2.91 -0.02 -0.70 16 Total: 0.00 -32.14 360.65 -0.82 -32.96 By element: Atomic # 1 Polarization: -18.19 SS G_CDS: -0.91 Total: -19.09 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 6.85 Total: 10.87 kcal Atomic # 7 Polarization: -7.84 SS G_CDS: -6.99 Total: -14.83 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -1.97 Total: -7.91 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.19 Total: -2.01 kcal Total: -32.14 -0.82 -32.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_11618758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.381 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds