Wall clock time and date at job start Sun Mar 7 2021 12:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35451 * 125.56388 * 2 1 4 4 C 1.50700 * 126.06707 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47578 * 150.02855 * 4 3 2 6 6 Si 1.86298 * 109.47398 * 30.02170 * 4 3 2 7 7 C 1.39838 * 107.86856 * 179.75802 * 3 2 1 8 8 C 1.50695 * 126.46299 * 180.26151 * 7 3 2 9 9 C 1.37879 * 107.07990 * 0.41371 * 7 3 2 10 10 C 1.46680 * 126.23247 * 179.84605 * 9 7 3 11 11 O 1.21691 * 119.99871 * 359.71906 * 10 9 7 12 12 N 1.34768 * 119.99836 * 179.71791 * 10 9 7 13 13 C 1.46503 * 119.99981 * 180.02562 * 12 10 9 14 14 H 1.08997 * 112.90424 * 23.74558 * 13 12 10 15 15 C 1.53781 * 113.61566 * 154.99865 * 13 12 10 16 16 C 1.53781 * 87.07915 * 89.11789 * 15 13 12 17 17 H 1.08999 * 113.61516 * 270.79940 * 16 15 13 18 18 C 1.50704 * 113.61535 * 139.98020 * 16 15 13 19 19 N 1.30503 * 125.64771 * 94.97476 * 18 16 15 20 20 C 1.34124 * 109.25583 * 180.02562 * 19 18 16 21 21 C 1.34675 * 108.02139 * 359.97438 * 20 19 18 22 22 N 1.35041 * 125.65300 * 275.00112 * 18 16 15 23 23 C 1.53780 * 87.08373 * 25.43257 * 16 15 13 24 24 N 1.35531 * 125.56666 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47229 * 270.00494 * 1 2 3 26 26 H 1.08999 * 109.46902 * 30.00493 * 1 2 3 27 27 H 1.09002 * 109.46804 * 149.99991 * 1 2 3 28 28 H 1.09007 * 109.46939 * 270.02242 * 4 3 2 29 29 H 0.96700 * 113.99604 * 300.00218 * 5 4 3 30 30 H 1.48500 * 109.99597 * 58.68561 * 6 4 3 31 31 H 1.48503 * 109.99955 * 180.02562 * 6 4 3 32 32 H 1.09000 * 109.47233 * 270.21043 * 8 7 3 33 33 H 1.09004 * 109.47126 * 30.20923 * 8 7 3 34 34 H 1.09000 * 109.47299 * 150.20661 * 8 7 3 35 35 H 0.97006 * 120.00448 * 0.02562 * 12 10 9 36 36 H 1.08995 * 113.61277 * 334.57003 * 15 13 12 37 37 H 1.09000 * 113.61555 * 203.66525 * 15 13 12 38 38 H 1.07993 * 125.99299 * 180.02562 * 20 19 18 39 39 H 1.07999 * 126.59056 * 179.74167 * 21 20 19 40 40 H 0.96996 * 126.39568 * 0.02562 * 22 18 16 41 41 H 1.09001 * 113.61580 * 89.11577 * 23 16 15 42 42 H 1.09002 * 113.61369 * 220.02125 * 23 16 15 43 43 H 0.97002 * 125.67723 * 359.96438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8199 2.5321 0.0005 5 8 2.7776 3.3519 0.6735 6 14 0.1812 2.6420 0.8799 7 6 3.6270 0.6768 0.0056 8 6 4.8486 1.5592 0.0132 9 6 3.6123 -0.7019 -0.0006 10 6 4.7861 -1.5815 -0.0010 11 8 5.9049 -1.1030 -0.0008 12 7 4.6254 -2.9196 -0.0017 13 6 5.7977 -3.7981 -0.0016 14 1 6.6881 -3.3173 0.4033 15 6 5.5246 -5.1897 0.5932 16 6 5.1274 -5.6314 -0.8253 17 1 4.0716 -5.4803 -1.0501 18 6 5.6104 -7.0129 -1.1849 19 7 4.9194 -8.1140 -1.0702 20 6 5.6656 -9.1495 -1.4823 21 6 6.8645 -8.6719 -1.8676 22 7 6.8301 -7.3167 -1.6786 23 6 6.0372 -4.5060 -1.3456 24 7 2.2953 -1.1025 -0.0005 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.7047 2.8770 -1.0271 29 1 2.9311 3.1018 1.5949 30 1 0.3179 2.1447 2.2725 31 1 -0.2982 4.0475 0.8868 32 1 5.1459 1.7770 -1.0126 33 1 4.6206 2.4909 0.5309 34 1 5.6629 1.0481 0.5268 35 1 3.7335 -3.3010 -0.0023 36 1 4.6979 -5.2065 1.3032 37 1 6.4184 -5.6862 0.9708 38 1 5.3587 -10.1847 -1.5026 39 1 7.6951 -9.2481 -2.2477 40 1 7.5479 -6.6913 -1.8643 41 1 7.0711 -4.8156 -1.4980 42 1 5.6241 -3.9708 -2.2007 43 1 1.9834 -2.0210 -0.0004 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:27:18 Heat of formation + Delta-G solvation = 59.690873 kcal Electronic energy + Delta-G solvation = -26171.157233 eV Core-core repulsion = 22413.285560 eV Total energy + Delta-G solvation = -3757.871673 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.12827 -42.66506 -40.94467 -39.14745 -37.90931 -34.78310 -33.64353 -33.46734 -32.91958 -30.63364 -29.29410 -27.70025 -26.86591 -26.57181 -25.71873 -22.97182 -22.43768 -21.80678 -20.82523 -20.68519 -20.22610 -19.43712 -18.90965 -17.61999 -17.13393 -16.71057 -16.60842 -16.22187 -16.02373 -15.80841 -15.56201 -15.33605 -15.03905 -14.80196 -14.57198 -14.48609 -14.28940 -14.00961 -13.88524 -13.70528 -13.62304 -13.45814 -13.26201 -13.10076 -12.58570 -12.50287 -12.32089 -11.93070 -11.81615 -11.56456 -11.22185 -11.06697 -11.03398 -10.52453 -10.28819 -9.53738 -9.36831 -8.96552 -4.75847 0.34901 1.07517 1.23868 1.67984 1.70918 1.88159 2.07330 2.09755 2.11391 2.20935 2.24508 3.24606 3.33392 3.42823 3.55015 3.73313 3.81397 3.85174 3.98986 4.04058 4.21264 4.23129 4.50098 4.51798 4.53780 4.57013 4.62110 4.67705 4.68337 4.74276 4.80375 4.83169 4.84807 4.90564 4.91510 4.97906 5.12143 5.14250 5.25330 5.33954 5.43771 5.70863 5.77386 5.83986 6.35964 6.46139 6.51336 6.60013 7.06424 7.10851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.087 3.913 3 C -0.233 4.233 4 C -0.051 4.051 5 O -0.549 6.549 6 Si 0.758 3.242 7 C -0.069 4.069 8 C -0.093 4.093 9 C -0.082 4.082 10 C 0.593 3.407 11 O -0.564 6.564 12 N -0.700 5.700 13 C 0.124 3.876 14 H 0.096 0.904 15 C -0.121 4.121 16 C -0.021 4.021 17 H 0.123 0.877 18 C 0.209 3.791 19 N -0.529 5.529 20 C -0.063 4.063 21 C -0.045 4.045 22 N -0.558 5.558 23 C -0.141 4.141 24 N -0.517 5.517 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.381 0.619 30 H -0.291 1.291 31 H -0.305 1.305 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.208 0.792 40 H 0.431 0.569 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 -4.461 -1.499 6.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.033 4.033 3 C -0.239 4.239 4 C -0.159 4.159 5 O -0.356 6.356 6 Si 0.664 3.336 7 C -0.078 4.078 8 C -0.150 4.150 9 C -0.194 4.194 10 C 0.382 3.618 11 O -0.443 6.443 12 N -0.352 5.352 13 C 0.018 3.982 14 H 0.114 0.886 15 C -0.160 4.160 16 C -0.041 4.041 17 H 0.141 0.859 18 C -0.056 4.056 19 N -0.250 5.250 20 C -0.210 4.210 21 C -0.179 4.179 22 N -0.163 5.163 23 C -0.180 4.180 24 N -0.116 5.116 25 H 0.120 0.880 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.131 0.869 29 H 0.230 0.770 30 H -0.218 1.218 31 H -0.234 1.234 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.247 0.753 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.195 0.805 39 H 0.225 0.775 40 H 0.272 0.728 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.707 -3.838 -1.127 6.177 hybrid contribution 2.091 -0.223 0.264 2.119 sum -2.617 -4.061 -0.863 4.908 Atomic orbital electron populations 1.20714 0.84542 1.05698 1.05675 1.20691 0.95051 0.84864 1.02709 1.19646 0.92559 0.95722 1.15986 1.24621 1.01915 0.86618 1.02790 1.86515 1.61830 1.57709 1.29555 0.94455 0.79212 0.79903 0.80045 1.19928 0.95360 0.91453 1.01051 1.20421 0.94085 0.98847 1.01669 1.19888 0.83781 0.93635 1.22121 1.17152 0.87220 0.81937 0.75463 1.90821 1.25772 1.75744 1.51934 1.45372 1.10010 1.04561 1.75217 1.21749 0.89469 0.89911 0.97049 0.88558 1.23332 1.03640 0.93274 0.95767 1.21114 1.01173 0.84382 0.97387 0.85889 1.23266 0.83521 0.96776 1.01995 1.70171 1.33521 0.98758 1.22516 1.22747 0.92597 0.99431 1.06187 1.23289 1.02394 0.83643 1.08619 1.43285 1.14789 1.08813 1.49415 1.23499 1.00656 0.95631 0.98233 1.41700 1.04007 1.09302 1.56569 0.88032 0.86499 0.86468 0.86878 0.77014 1.21806 1.23436 0.92792 0.89811 0.92394 0.75294 0.89045 0.88310 0.80510 0.77538 0.72832 0.88161 0.90166 0.72524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.48 8.21 71.24 0.59 2.07 16 2 C 0.09 -0.42 6.84 41.34 0.28 -0.13 16 3 C -0.23 -0.36 5.38 -20.12 -0.11 -0.47 16 4 C -0.05 -0.05 3.03 71.24 0.22 0.17 16 5 O -0.55 -2.74 10.20 -148.98 -1.52 -4.26 16 6 Si 0.76 -1.89 26.77 68.60 1.84 -0.06 16 7 C -0.07 -0.45 6.15 -19.56 -0.12 -0.57 16 8 C -0.09 -0.84 9.51 71.23 0.68 -0.17 16 9 C -0.08 -0.25 7.06 40.35 0.28 0.04 16 10 C 0.59 2.82 7.79 86.45 0.67 3.50 16 11 O -0.56 -7.35 14.40 -4.32 -0.06 -7.41 16 12 N -0.70 2.29 5.26 -444.01 -2.33 -0.04 16 13 C 0.12 -0.41 4.32 45.52 0.20 -0.22 16 14 H 0.10 0.06 7.46 -2.39 -0.02 0.04 16 15 C -0.12 0.65 7.38 31.12 0.23 0.88 16 16 C -0.02 0.09 4.17 -11.01 -0.05 0.04 16 17 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 18 C 0.21 0.30 7.36 138.13 1.02 1.31 16 19 N -0.53 -3.99 11.25 -188.13 -2.12 -6.10 16 20 C -0.06 -0.25 11.87 83.53 0.99 0.74 16 21 C -0.05 0.06 12.04 83.09 1.00 1.06 16 22 N -0.56 1.45 5.94 -186.26 -1.11 0.35 16 23 C -0.14 0.75 7.35 31.12 0.23 0.98 16 24 N -0.52 2.76 5.99 -171.93 -1.03 1.73 16 25 H 0.10 -1.49 7.13 -2.39 -0.02 -1.50 16 26 H 0.12 -1.84 5.18 -2.39 -0.01 -1.85 16 27 H 0.12 -2.12 8.14 -2.39 -0.02 -2.14 16 28 H 0.11 0.00 7.96 -2.38 -0.02 -0.02 16 29 H 0.38 0.24 8.46 -74.06 -0.63 -0.39 16 30 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 31 H -0.31 -1.80 7.11 99.48 0.71 -1.10 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 0.63 5.46 -2.39 -0.01 0.62 16 34 H 0.06 0.70 6.49 -2.39 -0.02 0.69 16 35 H 0.41 -3.91 7.83 -92.70 -0.73 -4.63 16 36 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.10 -0.49 8.09 -2.39 -0.02 -0.51 16 38 H 0.18 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.21 -1.73 8.06 -2.91 -0.02 -1.76 16 40 H 0.43 -3.60 7.53 -92.71 -0.70 -4.30 16 41 H 0.10 -0.78 6.64 -2.39 -0.02 -0.80 16 42 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.43 -5.60 8.19 -92.71 -0.76 -6.35 16 Total: 0.00 -29.67 345.74 -1.90 -31.56 By element: Atomic # 1 Polarization: -23.35 SS G_CDS: -1.67 Total: -25.02 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 6.11 Total: 9.24 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -6.59 Total: -4.06 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.58 Total: -11.66 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 1.84 Total: -0.06 kcal Total: -29.67 -1.90 -31.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.253 kcal (2) G-P(sol) polarization free energy of solvation -29.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds