Wall clock time and date at job start Sun Mar 7 2021 12:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47349 * 2 1 4 4 C 1.50703 * 109.47055 * 240.00160 * 2 1 3 5 5 C 1.38395 * 119.82716 * 119.72466 * 4 2 1 6 6 C 1.37898 * 120.17110 * 179.76727 * 5 4 2 7 7 C 1.39830 * 119.82260 * 0.50745 * 6 5 4 8 8 C 1.47210 * 120.17072 * 179.77004 * 7 6 5 9 9 C 1.34815 * 119.99490 * 359.97438 * 8 7 6 10 10 C 1.46434 * 119.99613 * 179.97438 * 9 8 7 11 11 O 1.21690 * 119.99890 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99461 * 179.97438 * 10 9 8 13 13 C 1.46512 * 119.99735 * 180.02562 * 12 10 9 14 14 H 1.09001 * 112.84656 * 23.80711 * 13 12 10 15 15 C 1.53777 * 113.61460 * 155.00055 * 13 12 10 16 16 C 1.53786 * 87.07951 * 89.11891 * 15 13 12 17 17 H 1.09002 * 113.61162 * 270.80002 * 16 15 13 18 18 C 1.50698 * 113.61441 * 139.98275 * 16 15 13 19 19 N 1.30499 * 125.65313 * 95.02654 * 18 16 15 20 20 C 1.34128 * 109.25476 * 179.97438 * 19 18 16 21 21 C 1.34669 * 108.02300 * 359.97438 * 20 19 18 22 22 N 1.35050 * 125.64468 * 274.71438 * 18 16 15 23 23 C 1.53773 * 113.61277 * 252.50080 * 13 12 10 24 24 C 1.39833 * 119.66335 * 359.74931 * 7 6 5 25 25 C 1.37891 * 119.82296 * 359.97438 * 24 7 6 26 26 H 0.96708 * 114.00101 * 59.99198 * 1 2 3 27 27 H 1.09002 * 109.46984 * 120.00249 * 2 1 3 28 28 H 1.48501 * 109.99652 * 59.99990 * 3 2 1 29 29 H 1.48494 * 110.00064 * 181.31859 * 3 2 1 30 30 H 1.08004 * 119.91845 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.08697 * 180.23247 * 6 5 4 32 32 H 1.07997 * 120.00388 * 179.97438 * 8 7 6 33 33 H 1.07997 * 120.00121 * 0.02562 * 9 8 7 34 34 H 0.97000 * 120.00646 * 0.02562 * 12 10 9 35 35 H 1.08994 * 113.61559 * 203.66501 * 15 13 12 36 36 H 1.09002 * 113.61425 * 334.49015 * 15 13 12 37 37 H 1.08004 * 125.98579 * 179.97438 * 20 19 18 38 38 H 1.07993 * 126.58815 * 179.97438 * 21 20 19 39 39 H 0.96996 * 126.39742 * 0.02562 * 22 18 16 40 40 H 1.09003 * 113.61693 * 25.43459 * 23 13 12 41 41 H 1.09004 * 113.61114 * 156.33521 * 23 13 12 42 42 H 1.07996 * 120.08803 * 180.02562 * 24 7 6 43 43 H 1.08008 * 119.91304 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7220 -0.0327 -2.1420 6 6 3.1895 -0.6772 -3.2679 7 6 2.8538 -2.0158 -3.4927 8 6 3.3444 -2.7098 -4.6947 9 6 4.1191 -2.0544 -5.5823 10 6 4.6076 -2.7449 -6.7777 11 8 4.3140 -3.9101 -6.9700 12 7 5.3816 -2.0895 -7.6653 13 6 5.8700 -2.7801 -8.8616 14 1 5.2472 -3.6290 -9.1441 15 6 6.1899 -1.8345 -10.0313 16 6 7.6096 -1.7240 -9.4506 17 1 7.7223 -0.9205 -8.7226 18 6 8.6921 -1.7198 -10.4990 19 7 9.2440 -0.6573 -11.0182 20 6 10.1666 -1.0323 -11.9166 21 6 10.1876 -2.3783 -11.9553 22 7 9.2558 -2.8150 -11.0527 23 6 7.3724 -3.1043 -8.8154 24 6 2.0500 -2.6922 -2.5698 25 6 1.5951 -2.0355 -1.4458 26 1 -0.3934 0.4418 -0.7650 27 1 1.7923 -0.5139 0.8900 28 1 1.5615 2.4678 1.2085 29 1 3.5346 1.7702 -0.0321 30 1 2.9764 1.0027 -1.9694 31 1 3.8095 -0.1481 -3.9765 32 1 3.0839 -3.7439 -4.8654 33 1 4.3800 -1.0205 -5.4114 34 1 5.6154 -1.1607 -7.5122 35 1 6.1538 -2.3191 -11.0069 36 1 5.6308 -0.8993 -10.0021 37 1 10.7844 -0.3707 -12.5058 38 1 10.8203 -2.9946 -12.5767 39 1 9.0394 -3.7385 -10.8500 40 1 7.7691 -3.1936 -7.8041 41 1 7.6596 -3.9360 -9.4588 42 1 1.7869 -3.7262 -2.7364 43 1 0.9745 -2.5566 -0.7318 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_12360594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:28:08 Heat of formation + Delta-G solvation = 65.542908 kcal Electronic energy + Delta-G solvation = -25263.149111 eV Core-core repulsion = 21470.042451 eV Total energy + Delta-G solvation = -3793.106661 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.09495 -41.22616 -40.57179 -39.30282 -37.75584 -35.05138 -34.47696 -33.43614 -32.20263 -31.31609 -30.49197 -27.40263 -26.81611 -26.12864 -24.22694 -23.84905 -22.58470 -22.08471 -21.76551 -20.64472 -20.24884 -19.14120 -18.71973 -18.05917 -17.27979 -16.87572 -16.52823 -16.29818 -16.17399 -15.95101 -15.74701 -15.49105 -15.36883 -15.07278 -14.89369 -14.56076 -14.54589 -14.42512 -14.15765 -13.81339 -13.58905 -13.41380 -13.26279 -13.01623 -12.49156 -12.25756 -12.02929 -11.87929 -11.69942 -11.50943 -11.34455 -11.10035 -11.04165 -11.01340 -10.43458 -10.15576 -9.97637 -9.34705 -9.23126 -4.99681 -0.54375 0.40335 0.89076 1.09633 1.31513 1.63664 1.97480 2.08222 2.11910 2.21994 2.25002 2.82670 3.29506 3.38584 3.47990 3.56978 3.62708 3.69765 3.79329 3.83026 3.95751 4.09409 4.17604 4.23004 4.24773 4.36760 4.44983 4.51995 4.53301 4.57554 4.61094 4.65660 4.80201 4.85274 4.87662 4.96642 4.98552 5.05669 5.11018 5.15460 5.18008 5.39153 5.48681 5.53991 5.61217 5.79351 5.91024 6.48369 6.52781 6.75851 7.13246 7.20427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.112 4.112 5 C -0.123 4.123 6 C -0.094 4.094 7 C -0.081 4.081 8 C -0.020 4.020 9 C -0.208 4.208 10 C 0.547 3.453 11 O -0.589 6.589 12 N -0.695 5.695 13 C 0.122 3.878 14 H 0.093 0.907 15 C -0.121 4.121 16 C -0.022 4.022 17 H 0.124 0.876 18 C 0.209 3.791 19 N -0.530 5.530 20 C -0.063 4.063 21 C -0.046 4.046 22 N -0.558 5.558 23 C -0.141 4.141 24 C -0.103 4.103 25 C -0.108 4.108 26 H 0.396 0.604 27 H 0.105 0.895 28 H -0.304 1.304 29 H -0.282 1.282 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.123 0.877 33 H 0.165 0.835 34 H 0.419 0.581 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.177 0.823 38 H 0.208 0.792 39 H 0.431 0.569 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 1.750 -2.216 2.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.189 4.189 3 Si 0.687 3.313 4 C -0.113 4.113 5 C -0.140 4.140 6 C -0.112 4.112 7 C -0.081 4.081 8 C -0.040 4.040 9 C -0.229 4.229 10 C 0.337 3.663 11 O -0.471 6.471 12 N -0.346 5.346 13 C 0.016 3.984 14 H 0.111 0.889 15 C -0.161 4.161 16 C -0.042 4.042 17 H 0.142 0.858 18 C -0.056 4.056 19 N -0.250 5.250 20 C -0.210 4.210 21 C -0.180 4.180 22 N -0.163 5.163 23 C -0.181 4.181 24 C -0.121 4.121 25 C -0.126 4.126 26 H 0.246 0.754 27 H 0.123 0.877 28 H -0.232 1.232 29 H -0.209 1.209 30 H 0.167 0.833 31 H 0.176 0.824 32 H 0.141 0.859 33 H 0.182 0.818 34 H 0.257 0.743 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.195 0.805 38 H 0.225 0.775 39 H 0.272 0.728 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.928 2.070 -1.244 2.587 hybrid contribution 0.480 -1.651 0.111 1.723 sum 1.408 0.418 -1.133 1.855 Atomic orbital electron populations 1.86475 1.17240 1.82187 1.50552 1.25258 0.85333 1.11080 0.97192 0.93687 0.77850 0.75001 0.84799 1.20611 0.98550 0.95134 0.96995 1.21186 0.98068 1.00435 0.94288 1.21671 0.98660 0.93288 0.97555 1.19121 0.99522 0.94620 0.94885 1.22364 0.91672 0.99203 0.90764 1.23006 1.02924 1.02373 0.94553 1.18717 0.77650 0.85943 0.83945 1.90818 1.59819 1.18771 1.77726 1.45453 1.51057 1.16137 1.21978 1.21727 0.94814 0.96461 0.85421 0.88854 1.23321 0.93988 1.00881 0.97865 1.21132 0.89590 0.99979 0.93476 0.85830 1.23313 0.99950 0.81852 1.00439 1.70177 1.11788 1.30241 1.12835 1.22750 1.01717 0.94442 1.02100 1.23282 0.98582 0.96832 0.99290 1.43289 1.30527 1.10501 1.31996 1.23493 0.96109 0.96170 1.02287 1.21610 0.96317 1.00568 0.93579 1.21060 0.99557 0.94315 0.97677 0.75430 0.87727 1.23199 1.20881 0.83335 0.82391 0.85943 0.81796 0.74313 0.88529 0.88946 0.80538 0.77527 0.72834 0.90100 0.88355 0.84609 0.85446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.25 12.76 -148.98 -1.90 -1.65 16 2 C -0.08 0.12 2.82 71.24 0.20 0.32 16 3 Si 0.78 -2.86 29.77 68.60 2.04 -0.82 16 4 C -0.11 0.16 5.40 -19.79 -0.11 0.05 16 5 C -0.12 0.51 8.65 22.23 0.19 0.70 16 6 C -0.09 0.42 9.41 22.57 0.21 0.63 16 7 C -0.08 0.10 5.87 -20.15 -0.12 -0.02 16 8 C -0.02 0.01 9.46 23.84 0.23 0.23 16 9 C -0.21 0.63 9.41 23.62 0.22 0.85 16 10 C 0.55 1.02 7.74 86.38 0.67 1.69 16 11 O -0.59 -6.57 15.83 -4.32 -0.07 -6.64 16 12 N -0.70 2.92 5.26 -444.26 -2.34 0.59 16 13 C 0.12 -0.42 4.32 45.51 0.20 -0.22 16 14 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 15 C -0.12 0.62 7.38 31.12 0.23 0.85 16 16 C -0.02 0.08 4.17 -11.01 -0.05 0.03 16 17 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 18 C 0.21 0.41 7.36 138.13 1.02 1.43 16 19 N -0.53 -4.33 11.25 -188.13 -2.12 -6.45 16 20 C -0.06 -0.29 11.87 83.52 0.99 0.70 16 21 C -0.05 0.05 12.04 83.09 1.00 1.05 16 22 N -0.56 1.25 5.94 -186.27 -1.11 0.14 16 23 C -0.14 0.74 7.35 31.12 0.23 0.96 16 24 C -0.10 0.02 9.80 22.57 0.22 0.24 16 25 C -0.11 -0.02 9.59 22.22 0.21 0.19 16 26 H 0.40 -3.40 8.70 -74.05 -0.64 -4.04 16 27 H 0.11 0.01 7.96 -2.39 -0.02 -0.01 16 28 H -0.30 -1.39 7.11 99.48 0.71 -0.69 16 29 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 30 H 0.15 -1.27 4.85 -2.91 -0.01 -1.28 16 31 H 0.16 -1.65 6.17 -2.91 -0.02 -1.66 16 32 H 0.12 0.29 7.52 -2.91 -0.02 0.27 16 33 H 0.16 -1.70 6.07 -2.91 -0.02 -1.72 16 34 H 0.42 -4.26 8.68 -92.71 -0.80 -5.07 16 35 H 0.10 -0.44 8.09 -2.39 -0.02 -0.46 16 36 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 37 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 38 H 0.21 -1.68 8.06 -2.91 -0.02 -1.70 16 39 H 0.43 -3.49 7.53 -92.71 -0.70 -4.19 16 40 H 0.08 -0.33 8.14 -2.39 -0.02 -0.34 16 41 H 0.10 -0.75 6.64 -2.38 -0.02 -0.77 16 42 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 43 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 Total: 0.00 -26.53 363.99 -0.97 -27.49 By element: Atomic # 1 Polarization: -21.34 SS G_CDS: -1.03 Total: -22.37 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 5.55 Total: 9.70 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -5.56 Total: -5.72 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -1.97 Total: -8.29 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.04 Total: -0.82 kcal Total: -26.53 -0.97 -27.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_12360594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.037 kcal (2) G-P(sol) polarization free energy of solvation -26.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds