Wall clock time and date at job start Sun Mar 7 2021 12:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86304 * 109.47033 * 2 1 4 4 C 1.50704 * 109.47064 * 240.00168 * 2 1 3 5 5 C 1.34196 * 126.53990 * 105.03882 * 4 2 1 6 6 N 1.36858 * 109.96829 * 179.97438 * 5 4 2 7 7 C 1.37411 * 109.97856 * 0.02562 * 6 5 4 8 8 C 1.39330 * 133.24743 * 180.02562 * 7 6 5 9 9 C 1.36355 * 120.23330 * 179.97438 * 8 7 6 10 10 C 1.40158 * 120.66983 * 0.02562 * 9 8 7 11 11 C 1.47656 * 119.97500 * 179.97438 * 10 9 8 12 12 O 1.21575 * 120.00345 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99707 * 359.97438 * 11 10 9 14 14 C 1.46500 * 120.00115 * 180.02562 * 13 11 10 15 15 H 1.09000 * 112.84674 * 23.80336 * 14 13 11 16 16 C 1.53777 * 113.61631 * 155.00237 * 14 13 11 17 17 C 1.53778 * 87.08486 * 89.11425 * 16 14 13 18 18 H 1.08994 * 113.61952 * 270.80565 * 17 16 14 19 19 C 1.50700 * 113.61424 * 139.97539 * 17 16 14 20 20 N 1.30502 * 125.64425 * 95.28103 * 19 17 16 21 21 C 1.34127 * 109.25683 * 180.14781 * 20 19 17 22 22 C 1.34672 * 108.01948 * 359.61488 * 21 20 19 23 23 N 1.35041 * 125.65474 * 275.00229 * 19 17 16 24 24 C 1.53783 * 113.61372 * 252.49940 * 14 13 11 25 25 C 1.39190 * 120.05391 * 0.24946 * 10 9 8 26 26 C 1.39230 * 119.39579 * 359.48457 * 25 10 9 27 27 H 0.96703 * 114.00197 * 299.99691 * 1 2 3 28 28 H 1.08992 * 109.47142 * 120.00229 * 2 1 3 29 29 H 1.48502 * 109.99844 * 178.68403 * 3 2 1 30 30 H 1.48495 * 110.00078 * 300.00263 * 3 2 1 31 31 H 1.07996 * 125.01369 * 359.97438 * 5 4 2 32 32 H 0.96990 * 125.01455 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.88014 * 359.97438 * 8 7 6 34 34 H 1.08005 * 119.66051 * 179.97438 * 9 8 7 35 35 H 0.96998 * 120.00244 * 0.02562 * 13 11 10 36 36 H 1.09000 * 113.61791 * 334.56744 * 16 14 13 37 37 H 1.09000 * 113.69290 * 203.67808 * 16 14 13 38 38 H 1.08002 * 125.99481 * 179.88589 * 21 20 19 39 39 H 1.07997 * 126.59503 * 180.24939 * 22 21 20 40 40 H 0.96995 * 126.39762 * 0.02562 * 23 19 17 41 41 H 1.09005 * 113.61363 * 156.33285 * 24 14 13 42 42 H 1.09001 * 113.61356 * 25.43196 * 24 14 13 43 43 H 1.08005 * 120.29978 * 179.72539 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4614 -0.1386 -2.3227 6 7 2.8037 -1.1003 -3.2343 7 6 2.4952 -2.3454 -2.7415 8 6 2.6341 -3.6349 -3.2505 9 6 2.2295 -4.7102 -2.5162 10 6 1.6691 -4.5367 -1.2433 11 6 1.2355 -5.7119 -0.4617 12 8 0.7489 -5.5620 0.6423 13 7 1.3783 -6.9509 -0.9725 14 6 0.9476 -8.1170 -0.1973 15 1 0.1859 -7.8747 0.5438 16 6 0.5976 -9.3380 -1.0641 17 6 2.0768 -9.7431 -0.9521 18 1 2.7057 -9.3212 -1.7360 19 6 2.2848 -11.2244 -0.7686 20 7 2.5319 -12.0814 -1.7213 21 6 2.6555 -13.3076 -1.1920 22 6 2.4868 -13.2053 0.1402 23 7 2.2516 -11.8839 0.4093 24 6 2.1133 -8.9483 0.3639 25 6 1.5156 -3.2569 -0.7178 26 6 1.9332 -2.1575 -1.4631 27 1 -0.3934 0.4417 0.7651 28 1 1.7923 -0.5138 0.8899 29 1 3.5346 1.7703 0.0320 30 1 1.5614 2.4679 -1.2084 31 1 2.5978 0.9236 -2.4618 32 1 3.2048 -0.9285 -4.1005 33 1 3.0639 -3.7832 -4.2301 34 1 2.3411 -5.7057 -2.9200 35 1 1.7661 -7.0706 -1.8535 36 1 0.2910 -9.0803 -2.0779 37 1 -0.0845 -10.0373 -0.5806 38 1 2.8595 -14.2169 -1.7379 39 1 2.5293 -14.0108 0.8583 40 1 2.0908 -11.4942 1.2828 41 1 1.8458 -9.5404 1.2392 42 1 3.0305 -8.3760 0.5031 43 1 1.0802 -3.1184 0.2608 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_13287722.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:29:01 Heat of formation + Delta-G solvation = 85.414459 kcal Electronic energy + Delta-G solvation = -27735.539735 eV Core-core repulsion = 23749.642718 eV Total energy + Delta-G solvation = -3985.897017 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.137 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.09696 -42.56378 -41.24531 -39.43526 -37.86774 -37.45244 -34.60866 -33.45770 -33.42668 -31.17343 -30.75015 -30.19406 -26.82145 -26.52155 -26.42262 -24.74119 -23.57252 -22.59877 -21.80575 -21.76321 -20.68804 -20.47538 -19.20881 -19.01107 -18.43996 -18.31845 -17.45092 -17.15805 -16.36895 -16.19302 -15.86269 -15.69808 -15.63188 -15.39226 -15.21534 -15.07179 -14.89697 -14.83358 -14.56236 -14.51531 -14.17252 -13.85332 -13.62032 -13.57234 -13.43235 -12.75661 -12.64343 -12.49889 -12.07982 -11.92323 -11.87923 -11.50953 -11.13912 -11.04212 -11.00836 -10.89772 -10.20936 -10.19872 -9.43968 -9.34336 -8.92751 -4.92913 -0.22702 0.10709 1.09869 1.33314 1.34630 1.71013 1.78204 1.93943 1.96827 2.00273 2.12622 2.23208 2.81435 3.28803 3.37812 3.48057 3.57702 3.61394 3.66441 3.72188 3.79147 3.98901 4.07113 4.10247 4.19681 4.24687 4.33441 4.44397 4.48881 4.53327 4.56598 4.61012 4.65594 4.72331 4.80921 4.88259 4.93917 4.96227 5.04073 5.15466 5.19026 5.26546 5.37872 5.46993 5.51040 5.79619 5.87684 6.41907 6.46090 6.48742 6.95628 7.13530 7.14078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.569 6.569 2 C -0.058 4.058 3 Si 0.789 3.211 4 C -0.179 4.179 5 C 0.056 3.944 6 N -0.574 5.574 7 C 0.110 3.890 8 C -0.127 4.127 9 C -0.062 4.062 10 C -0.177 4.177 11 C 0.568 3.432 12 O -0.580 6.580 13 N -0.695 5.695 14 C 0.121 3.879 15 H 0.095 0.905 16 C -0.121 4.121 17 C -0.022 4.022 18 H 0.123 0.877 19 C 0.210 3.790 20 N -0.530 5.530 21 C -0.063 4.063 22 C -0.045 4.045 23 N -0.558 5.558 24 C -0.141 4.141 25 C -0.013 4.013 26 C -0.130 4.130 27 H 0.399 0.601 28 H 0.072 0.928 29 H -0.287 1.287 30 H -0.282 1.282 31 H 0.187 0.813 32 H 0.437 0.563 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.415 0.585 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.177 0.823 39 H 0.208 0.792 40 H 0.431 0.569 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.112 1.977 0.316 2.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.379 6.379 2 C -0.167 4.167 3 Si 0.692 3.308 4 C -0.186 4.186 5 C -0.071 4.071 6 N -0.177 5.177 7 C 0.001 3.999 8 C -0.148 4.148 9 C -0.082 4.082 10 C -0.181 4.181 11 C 0.358 3.642 12 O -0.461 6.461 13 N -0.347 5.347 14 C 0.016 3.984 15 H 0.113 0.887 16 C -0.161 4.161 17 C -0.042 4.042 18 H 0.141 0.859 19 C -0.055 4.055 20 N -0.250 5.250 21 C -0.210 4.210 22 C -0.179 4.179 23 N -0.163 5.163 24 C -0.180 4.180 25 C -0.033 4.033 26 C -0.135 4.135 27 H 0.249 0.751 28 H 0.090 0.910 29 H -0.214 1.214 30 H -0.209 1.209 31 H 0.204 0.796 32 H 0.278 0.722 33 H 0.179 0.821 34 H 0.182 0.818 35 H 0.254 0.746 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.195 0.805 39 H 0.225 0.775 40 H 0.272 0.728 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.478 2.533 -0.868 3.648 hybrid contribution 0.241 -0.761 0.384 0.886 sum 2.719 1.772 -0.485 3.282 Atomic orbital electron populations 1.86478 1.17964 1.82531 1.50896 1.24397 0.85260 1.11435 0.95606 0.93785 0.77281 0.74064 0.85686 1.20107 1.09166 0.91566 0.97777 1.21875 1.01066 0.94962 0.89189 1.41694 1.54135 1.03391 1.18519 1.18731 0.99754 0.87691 0.93762 1.20073 1.04679 0.87748 1.02273 1.20936 0.95392 1.00159 0.91665 1.19577 1.08829 0.92284 0.97434 1.18325 0.77094 0.83710 0.85114 1.90763 1.46480 1.86669 1.22200 1.45418 1.63564 1.04242 1.21495 1.21765 0.97300 0.84467 0.94889 0.88678 1.23333 0.95212 0.95576 1.01930 1.21126 0.98886 0.84040 1.00139 0.85863 1.23270 1.04391 0.96508 0.81312 1.70175 1.20486 1.01539 1.32839 1.22748 1.08802 0.96398 0.93070 1.23285 1.08807 0.86889 0.98957 1.43285 1.54318 1.08010 1.10663 1.23501 0.99947 0.97824 0.96713 1.20619 0.93810 0.90282 0.98571 1.19174 1.05488 0.93217 0.95604 0.75055 0.91039 1.21398 1.20866 0.79641 0.72178 0.82113 0.81817 0.74595 0.89017 0.88264 0.80535 0.77500 0.72812 0.88110 0.90090 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.21 12.86 -148.98 -1.92 -4.13 16 2 C -0.06 -0.16 3.05 71.24 0.22 0.06 16 3 Si 0.79 -2.06 30.80 68.60 2.11 0.05 16 4 C -0.18 -1.24 5.61 -18.61 -0.10 -1.34 16 5 C 0.06 0.15 10.43 82.99 0.87 1.01 16 6 N -0.57 0.16 6.05 -187.48 -1.13 -0.98 16 7 C 0.11 0.40 7.27 39.19 0.28 0.69 16 8 C -0.13 0.15 10.00 22.09 0.22 0.37 16 9 C -0.06 0.07 9.46 22.30 0.21 0.28 16 10 C -0.18 -1.02 5.87 -20.09 -0.12 -1.14 16 11 C 0.57 4.04 7.76 86.73 0.67 4.71 16 12 O -0.58 -8.99 15.93 -3.95 -0.06 -9.05 16 13 N -0.70 0.56 5.21 -443.09 -2.31 -1.74 16 14 C 0.12 -0.18 4.32 45.52 0.20 0.01 16 15 H 0.10 0.23 7.46 -2.39 -0.02 0.21 16 16 C -0.12 0.46 7.38 31.12 0.23 0.69 16 17 C -0.02 0.06 4.17 -11.01 -0.05 0.01 16 18 H 0.12 -0.45 8.14 -2.39 -0.02 -0.47 16 19 C 0.21 0.56 7.36 138.13 1.02 1.58 16 20 N -0.53 -4.63 11.25 -188.13 -2.12 -6.75 16 21 C -0.06 -0.32 11.87 83.52 0.99 0.67 16 22 C -0.05 0.03 12.04 83.09 1.00 1.03 16 23 N -0.56 0.93 5.94 -186.27 -1.11 -0.18 16 24 C -0.14 0.55 7.35 31.12 0.23 0.78 16 25 C -0.01 -0.13 9.64 22.74 0.22 0.09 16 26 C -0.13 -1.14 6.34 -20.21 -0.13 -1.27 16 27 H 0.40 -2.71 8.74 -74.06 -0.65 -3.36 16 28 H 0.07 0.11 7.96 -2.39 -0.02 0.10 16 29 H -0.29 -0.70 7.11 99.48 0.71 0.00 16 30 H -0.28 -0.57 7.04 99.48 0.70 0.13 16 31 H 0.19 -0.34 6.30 -2.91 -0.02 -0.36 16 32 H 0.44 -3.29 8.96 -92.72 -0.83 -4.12 16 33 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 34 H 0.16 -1.45 6.36 -2.91 -0.02 -1.47 16 35 H 0.42 -2.79 6.70 -92.71 -0.62 -3.41 16 36 H 0.09 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.10 -0.36 8.09 -2.39 -0.02 -0.38 16 38 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 39 H 0.21 -1.60 8.06 -2.91 -0.02 -1.62 16 40 H 0.43 -3.25 7.53 -92.71 -0.70 -3.95 16 41 H 0.10 -0.68 6.64 -2.38 -0.02 -0.70 16 42 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 43 H 0.12 1.51 7.64 -2.91 -0.02 1.49 16 Total: 0.00 -31.93 363.12 -2.22 -34.15 By element: Atomic # 1 Polarization: -17.95 SS G_CDS: -1.65 Total: -19.60 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 5.96 Total: 8.22 kcal Atomic # 7 Polarization: -2.98 SS G_CDS: -6.67 Total: -9.65 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -1.98 Total: -13.18 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: 2.11 Total: 0.05 kcal Total: -31.93 -2.22 -34.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_13287722.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.564 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds