Wall clock time and date at job start Sun Mar 7 2021 12:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.35996 * 120.07268 * 0.02562 * 4 3 2 6 6 C 1.42898 * 117.00326 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47463 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99560 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00220 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.85348 * 23.80133 * 10 9 7 12 12 C 1.53782 * 113.61624 * 154.99893 * 10 9 7 13 13 C 1.53782 * 87.08033 * 89.11498 * 12 10 9 14 14 H 1.08996 * 113.61449 * 270.80120 * 13 12 10 15 15 C 1.50705 * 113.61094 * 139.98308 * 13 12 10 16 16 N 1.30497 * 125.65111 * 95.03106 * 15 13 12 17 17 C 1.34128 * 109.25626 * 179.97438 * 16 15 13 18 18 C 1.34664 * 108.02149 * 359.97438 * 17 16 15 19 19 N 1.35044 * 125.64604 * 274.71443 * 15 13 12 20 20 C 1.53784 * 87.08196 * 25.43558 * 13 12 10 21 21 C 1.38559 * 119.85488 * 179.69910 * 4 3 2 22 22 C 1.38247 * 120.00080 * 0.57732 * 21 4 3 23 23 N 1.48000 * 119.92825 * 179.74409 * 22 21 4 24 24 O 1.21793 * 120.00313 * 359.97438 * 23 22 21 25 25 O 1.21806 * 119.99643 * 179.97438 * 23 22 21 26 26 C 1.38252 * 120.14246 * 359.71520 * 22 21 4 27 27 C 1.50701 * 119.92592 * 179.97438 * 26 22 21 28 28 O 1.42898 * 109.46796 * 74.98438 * 27 26 22 29 29 Si 1.86299 * 109.47306 * 194.98296 * 27 26 22 30 30 C 1.38239 * 120.14671 * 359.97438 * 26 22 21 31 31 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 33 33 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 34 34 H 1.09001 * 109.46669 * 299.99736 * 6 5 4 35 35 H 1.08996 * 109.47326 * 59.99288 * 6 5 4 36 36 H 0.97002 * 119.99726 * 359.97438 * 9 7 6 37 37 H 1.09001 * 113.61546 * 203.66190 * 12 10 9 38 38 H 1.08995 * 113.61693 * 334.56699 * 12 10 9 39 39 H 1.08005 * 125.98730 * 179.97438 * 17 16 15 40 40 H 1.07999 * 126.59494 * 180.02562 * 18 17 16 41 41 H 0.96993 * 126.40124 * 0.02562 * 19 15 13 42 42 H 1.08992 * 113.61392 * 220.02183 * 20 13 12 43 43 H 1.08998 * 113.61224 * 89.11202 * 20 13 12 44 44 H 1.08000 * 120.00353 * 180.28897 * 21 4 3 45 45 H 1.09005 * 109.47251 * 314.98409 * 27 26 22 46 46 H 0.96697 * 114.00651 * 60.00217 * 28 27 26 47 47 H 1.48498 * 110.00157 * 58.68009 * 29 27 26 48 48 H 1.48499 * 110.00131 * 180.02562 * 29 27 26 49 49 H 1.08005 * 120.00155 * 179.97438 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1796 0.1476 0.0108 6 6 5.6003 0.3005 0.0171 7 6 6.2518 -1.0584 0.0227 8 8 5.5668 -2.0593 0.0219 9 7 7.5956 -1.1614 0.0286 10 6 8.2289 -2.4824 0.0335 11 1 7.5850 -3.2621 -0.3733 12 6 9.6493 -2.4868 -0.5560 13 6 10.1546 -2.1804 0.8637 14 1 10.2112 -1.1149 1.0866 15 6 11.4143 -2.9225 1.2294 16 7 12.6292 -2.4591 1.1192 17 6 13.4979 -3.3917 1.5371 18 6 12.7946 -4.4739 1.9214 19 7 11.4724 -4.1750 1.7309 20 6 8.8716 -2.8525 1.3807 21 6 4.0604 2.5232 -0.0006 22 6 3.3031 3.6798 -0.0005 23 7 3.9717 5.0001 -0.0016 24 8 5.1878 5.0670 -0.0020 25 8 3.3057 6.0200 -0.0020 26 6 1.9225 3.6057 -0.0001 27 6 1.1018 4.8696 0.0006 28 8 1.1347 5.4595 -1.3005 29 14 -0.6593 4.4663 0.4552 30 6 1.2934 2.3748 -0.0002 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5139 0.8900 34 1 5.9106 0.8489 -0.8724 35 1 5.9025 0.8516 0.9075 36 1 8.1434 -0.3609 0.0288 37 1 9.9636 -3.4610 -0.9305 38 1 9.8295 -1.6806 -1.2670 39 1 14.5731 -3.2921 1.5612 40 1 13.1962 -5.3984 2.3091 41 1 10.7182 -4.7552 1.9193 42 1 8.4240 -2.3414 2.2329 43 1 8.9734 -3.9266 1.5355 44 1 5.1387 2.5838 -0.0009 45 1 1.5135 5.5698 0.7276 46 1 0.7827 4.8912 -1.9992 47 1 -0.7040 3.8230 1.7929 48 1 -1.4792 5.7044 0.4588 49 1 0.2147 2.3196 0.0005 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_4549636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:30:49 Heat of formation + Delta-G solvation = -5.399999 kcal Electronic energy + Delta-G solvation = -37782.948166 eV Core-core repulsion = 32491.072892 eV Total energy + Delta-G solvation = -5291.875274 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.151 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.39867 -43.10505 -42.11610 -41.29569 -40.03816 -39.27625 -38.95009 -37.72835 -37.12584 -34.67643 -33.44810 -32.67404 -32.53691 -30.86121 -29.66855 -28.73629 -27.91091 -26.83514 -26.26321 -25.69024 -23.94181 -23.23091 -22.64675 -22.02005 -21.78127 -20.79625 -20.50238 -19.84839 -19.50894 -19.11100 -18.69331 -18.63724 -18.31643 -17.74637 -17.66487 -17.36950 -16.95636 -16.85189 -16.40395 -16.21084 -16.08410 -15.78099 -15.74232 -15.40001 -15.36814 -15.03960 -14.80142 -14.57374 -14.47202 -14.37925 -13.98338 -13.89118 -13.59168 -13.48369 -13.42323 -13.02087 -12.66768 -12.52880 -12.49317 -12.42778 -12.32525 -12.27165 -12.21263 -11.90432 -11.78099 -11.53502 -11.12221 -11.04560 -11.01865 -10.53240 -10.45566 -10.25057 -9.48652 -9.35550 -5.13513 -1.36481 -0.43042 0.16401 0.30993 1.08699 1.12979 1.21477 1.35699 1.57368 1.89807 1.90417 1.94041 2.11720 2.19074 2.32563 2.98298 3.17460 3.27419 3.27645 3.36319 3.44602 3.49582 3.56008 3.59436 3.76648 3.88833 3.94565 3.96697 4.06083 4.08604 4.11951 4.23015 4.23894 4.39929 4.42313 4.52330 4.53838 4.55445 4.60266 4.64270 4.73644 4.77157 4.82810 4.86151 4.95042 5.02108 5.13718 5.25205 5.42584 5.59217 5.78514 6.06314 6.35437 6.46474 6.48152 6.71862 7.04318 7.12770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.306 6.306 3 C 0.172 3.828 4 C 0.101 3.899 5 O -0.289 6.289 6 C 0.025 3.975 7 C 0.522 3.478 8 O -0.562 6.562 9 N -0.694 5.694 10 C 0.125 3.875 11 H 0.097 0.903 12 C -0.121 4.121 13 C -0.024 4.024 14 H 0.125 0.875 15 C 0.209 3.791 16 N -0.531 5.531 17 C -0.064 4.064 18 C -0.045 4.045 19 N -0.558 5.558 20 C -0.141 4.141 21 C -0.110 4.110 22 C -0.046 4.046 23 N 0.035 4.965 24 O -0.187 6.187 25 O -0.167 6.167 26 C -0.040 4.040 27 C -0.092 4.092 28 O -0.536 6.536 29 Si 0.787 3.213 30 C -0.163 4.163 31 H 0.121 0.879 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.422 0.578 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.176 0.824 40 H 0.208 0.792 41 H 0.431 0.569 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.183 0.817 45 H 0.114 0.886 46 H 0.393 0.607 47 H -0.271 1.271 48 H -0.291 1.291 49 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -7.105 -0.509 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.218 6.218 3 C 0.123 3.877 4 C 0.054 3.946 5 O -0.202 6.202 6 C -0.052 4.052 7 C 0.308 3.692 8 O -0.439 6.439 9 N -0.348 5.348 10 C 0.019 3.981 11 H 0.115 0.885 12 C -0.160 4.160 13 C -0.044 4.044 14 H 0.142 0.858 15 C -0.056 4.056 16 N -0.251 5.251 17 C -0.210 4.210 18 C -0.179 4.179 19 N -0.163 5.163 20 C -0.180 4.180 21 C -0.130 4.130 22 C -0.131 4.131 23 N 0.548 4.452 24 O -0.397 6.397 25 O -0.380 6.380 26 C -0.042 4.042 27 C -0.200 4.200 28 O -0.343 6.343 29 Si 0.689 3.311 30 C -0.182 4.182 31 H 0.140 0.860 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.260 0.740 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.194 0.806 40 H 0.225 0.775 41 H 0.272 0.728 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.200 0.800 45 H 0.131 0.869 46 H 0.242 0.758 47 H -0.197 1.197 48 H -0.218 1.218 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -5.129 -7.451 0.086 9.047 hybrid contribution 1.128 0.254 0.740 1.372 sum -4.002 -7.198 0.826 8.277 Atomic orbital electron populations 1.23817 0.74689 1.07094 1.04178 1.86331 1.24847 1.24455 1.86170 1.18665 0.89147 0.86384 0.93517 1.17945 0.88815 0.85079 1.02778 1.86295 1.18416 1.26738 1.88725 1.22917 0.78849 0.96097 1.07383 1.20250 0.82869 0.90397 0.75666 1.90787 1.63806 1.39674 1.49628 1.45355 1.05184 1.09705 1.74528 1.21744 0.93837 0.85520 0.96981 0.88511 1.23334 0.92571 1.04384 0.95759 1.21168 0.85834 0.99828 0.97533 0.85755 1.23329 0.95587 0.84852 1.01829 1.70177 1.00049 1.32300 1.22559 1.22739 1.00563 0.91482 1.06264 1.23276 0.82929 1.03112 1.08621 1.43280 1.09067 1.14691 1.49251 1.23504 0.94262 1.01965 0.98308 1.20910 1.03015 0.88169 1.00873 1.20565 0.92780 0.81902 1.17840 1.43733 1.00825 1.03469 0.97147 1.94503 0.96528 1.94134 1.54560 1.94579 1.64401 1.25459 1.53580 1.20224 0.91053 0.97678 0.95270 1.25774 1.10646 0.92777 0.90791 1.86669 1.87109 1.44592 1.15961 0.94395 0.71726 0.82162 0.82787 1.21083 1.01781 0.88088 1.07200 0.86035 0.88841 0.90211 0.85301 0.85456 0.74016 0.88403 0.88839 0.80639 0.77547 0.72804 0.89870 0.88245 0.79964 0.86861 0.75801 1.19732 1.21809 0.78958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.40 10.28 -79.59 -0.82 -0.42 16 3 C 0.17 -0.33 6.70 22.57 0.15 -0.18 16 4 C 0.10 -0.03 6.70 22.57 0.15 0.12 16 5 O -0.29 -0.56 9.45 -67.09 -0.63 -1.19 16 6 C 0.03 -0.14 5.22 71.24 0.37 0.23 16 7 C 0.52 -0.39 7.91 87.66 0.69 0.30 16 8 O -0.56 -5.61 16.10 15.99 0.26 -5.35 16 9 N -0.69 4.86 5.26 -440.04 -2.32 2.55 16 10 C 0.12 -0.69 4.32 45.52 0.20 -0.50 16 11 H 0.10 -0.16 7.46 -2.39 -0.02 -0.18 16 12 C -0.12 0.80 7.38 31.12 0.23 1.03 16 13 C -0.02 0.12 4.17 -11.01 -0.05 0.07 16 14 H 0.12 -0.74 8.14 -2.39 -0.02 -0.76 16 15 C 0.21 0.27 7.36 138.13 1.02 1.28 16 16 N -0.53 -4.15 11.25 -188.13 -2.12 -6.26 16 17 C -0.06 -0.28 11.87 83.52 0.99 0.71 16 18 C -0.05 0.06 12.04 83.08 1.00 1.06 16 19 N -0.56 1.62 5.94 -186.26 -1.11 0.52 16 20 C -0.14 0.98 7.35 31.12 0.23 1.20 16 21 C -0.11 0.13 8.54 22.35 0.19 0.32 16 22 C -0.05 -0.14 6.85 36.38 0.25 0.11 16 23 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 24 O -0.19 -1.99 18.44 18.89 0.35 -1.64 16 25 O -0.17 -2.15 14.62 25.10 0.37 -1.78 16 26 C -0.04 0.04 5.26 -19.86 -0.10 -0.07 16 27 C -0.09 0.01 1.74 71.24 0.12 0.13 16 28 O -0.54 -0.57 11.79 -129.60 -1.53 -2.10 16 29 Si 0.79 -4.38 29.91 68.60 2.05 -2.33 16 30 C -0.16 0.95 7.65 22.35 0.17 1.12 16 31 H 0.12 -1.50 8.14 -2.39 -0.02 -1.52 16 32 H 0.09 -1.48 7.66 -2.39 -0.02 -1.50 16 33 H 0.08 -1.09 7.66 -2.38 -0.02 -1.11 16 34 H 0.13 -1.47 7.65 -2.39 -0.02 -1.49 16 35 H 0.13 -1.44 7.68 -2.39 -0.02 -1.46 16 36 H 0.42 -5.55 8.70 -92.71 -0.81 -6.36 16 37 H 0.10 -0.58 8.09 -2.39 -0.02 -0.60 16 38 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H 0.18 0.22 8.06 -2.91 -0.02 0.19 16 40 H 0.21 -1.74 8.06 -2.91 -0.02 -1.76 16 41 H 0.43 -3.85 7.53 -92.71 -0.70 -4.55 16 42 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 43 H 0.10 -0.91 6.64 -2.39 -0.02 -0.93 16 44 H 0.18 -1.02 5.85 -2.91 -0.02 -1.04 16 45 H 0.11 0.55 6.07 -2.38 -0.01 0.53 16 46 H 0.39 -3.53 8.70 -74.06 -0.64 -4.17 16 47 H -0.27 0.62 7.11 99.48 0.71 1.33 16 48 H -0.29 -0.76 7.11 99.48 0.71 -0.05 16 49 H 0.19 -2.52 3.36 -2.91 -0.01 -2.53 16 Total: 0.00 -38.97 414.32 0.00 -38.97 By element: Atomic # 1 Polarization: -28.18 SS G_CDS: -1.03 Total: -29.20 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.73 Total: 8.11 kcal Atomic # 7 Polarization: 2.67 SS G_CDS: -5.75 Total: -3.07 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -2.01 Total: -12.48 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.33 kcal Total: -38.97 0.00 -38.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_4549636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.571 kcal (2) G-P(sol) polarization free energy of solvation -38.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds