Wall clock time and date at job start Sun Mar 7 2021 12:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.46981 * 2 1 4 4 C 1.50700 * 109.47494 * 239.99865 * 2 1 3 5 5 C 1.38244 * 119.94267 * 120.01830 * 4 2 1 6 6 C 1.38166 * 120.05634 * 179.72285 * 5 4 2 7 7 C 1.38721 * 119.94279 * 0.49345 * 6 5 4 8 8 O 1.35895 * 120.05627 * 179.79133 * 7 6 5 9 9 C 1.42897 * 116.99951 * 359.71767 * 8 7 6 10 10 C 1.50701 * 109.47110 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00120 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00073 * 179.97438 * 12 10 9 14 14 H 1.09004 * 112.84885 * 23.80358 * 13 12 10 15 15 C 1.53783 * 113.61455 * 154.99535 * 13 12 10 16 16 C 1.53780 * 87.07835 * 89.11921 * 15 13 12 17 17 H 1.09000 * 113.61268 * 270.80345 * 16 15 13 18 18 C 1.50696 * 113.61529 * 139.97976 * 16 15 13 19 19 N 1.30498 * 125.65003 * 96.50306 * 18 16 15 20 20 C 1.34129 * 109.25671 * 179.77584 * 19 18 16 21 21 C 1.34666 * 108.02165 * 0.40230 * 20 19 18 22 22 N 1.35047 * 125.65435 * 276.52753 * 18 16 15 23 23 C 1.53784 * 87.17253 * 25.38900 * 16 15 13 24 24 C 1.38750 * 119.88251 * 359.50851 * 7 6 5 25 25 N 1.48010 * 120.02308 * 180.27766 * 24 7 6 26 26 O 1.21801 * 119.99689 * 180.02562 * 25 24 7 27 27 O 1.21797 * 119.99929 * 0.02562 * 25 24 7 28 28 C 1.38118 * 119.95125 * 0.25825 * 24 7 6 29 29 H 0.96706 * 114.00007 * 60.00673 * 1 2 3 30 30 H 1.08999 * 109.47027 * 120.00070 * 2 1 3 31 31 H 1.48507 * 109.99751 * 59.99881 * 3 2 1 32 32 H 1.48497 * 110.00006 * 181.31572 * 3 2 1 33 33 H 1.08003 * 119.97363 * 359.97438 * 5 4 2 34 34 H 1.07997 * 120.03509 * 180.25655 * 6 5 4 35 35 H 1.08996 * 109.47257 * 60.00437 * 9 8 7 36 36 H 1.09000 * 109.47617 * 300.00274 * 9 8 7 37 37 H 0.97000 * 120.00034 * 359.97438 * 12 10 9 38 38 H 1.09001 * 113.61452 * 334.57145 * 15 13 12 39 39 H 1.08997 * 113.69050 * 203.67764 * 15 13 12 40 40 H 1.08003 * 125.99108 * 180.25065 * 20 19 18 41 41 H 1.08002 * 126.59556 * 179.87817 * 21 20 19 42 42 H 0.97001 * 126.39174 * 359.97438 * 22 18 16 43 43 H 1.08997 * 113.61112 * 89.16028 * 23 16 15 44 44 H 1.08999 * 113.61127 * 220.06129 * 23 16 15 45 45 H 1.08004 * 119.97853 * 179.97438 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 2.7265 -0.0375 -2.1394 6 6 3.1931 -0.6882 -3.2654 7 6 2.8548 -2.0149 -3.4885 8 8 3.3090 -2.6559 -4.5974 9 6 4.1257 -1.9008 -5.4944 10 6 4.5316 -2.7699 -6.6568 11 8 4.1577 -3.9223 -6.7118 12 7 5.3099 -2.2664 -7.6351 13 6 5.7049 -3.1115 -8.7648 14 1 5.0183 -3.9412 -8.9331 15 6 6.0378 -2.3191 -10.0401 16 6 7.4837 -2.2443 -9.5217 17 1 7.6765 -1.3778 -8.8892 18 6 8.5214 -2.4248 -10.5994 19 7 9.1387 -1.4632 -11.2295 20 6 9.9950 -1.9932 -12.1155 21 6 9.8985 -3.3341 -12.0374 22 7 8.9664 -3.6085 -11.0734 23 6 7.1861 -3.5296 -8.7315 24 6 2.0566 -2.6879 -2.5746 25 7 1.6988 -4.1053 -2.8066 26 8 0.9977 -4.6955 -2.0042 27 8 2.1054 -4.6813 -3.7997 28 6 1.5966 -2.0344 -1.4482 29 1 -0.3933 0.4416 -0.7651 30 1 1.7923 -0.5138 0.8900 31 1 1.5613 2.4679 1.2085 32 1 3.5345 1.7703 -0.0320 33 1 2.9864 0.9965 -1.9672 34 1 3.8176 -0.1635 -3.9731 35 1 5.0168 -1.5548 -4.9706 36 1 3.5640 -1.0421 -5.8620 37 1 5.6086 -1.3446 -7.5913 38 1 5.5424 -1.3496 -10.0935 39 1 5.9320 -2.8995 -10.9565 40 1 10.6459 -1.4412 -12.7774 41 1 10.4533 -4.0546 -12.6201 42 1 8.6790 -4.4888 -10.7845 43 1 7.3947 -4.4429 -9.2888 44 1 7.6165 -3.5360 -7.7301 45 1 0.9750 -2.5577 -0.7367 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16970406_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 12:30:55 Heat of formation + Delta-G solvation = 28.159410 kcal Electronic energy + Delta-G solvation = -32920.256406 eV Core-core repulsion = 28104.056188 eV Total energy + Delta-G solvation = -4816.200218 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.135 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.15882 -43.04533 -41.84077 -41.18199 -39.94884 -39.01766 -37.54866 -37.14721 -34.74922 -33.53384 -33.45101 -32.41299 -30.98070 -29.82694 -27.62165 -27.06867 -26.83335 -26.20065 -24.21021 -22.91386 -22.67616 -22.08882 -21.82107 -20.68955 -20.49331 -19.48340 -19.24242 -19.17188 -18.48618 -18.37077 -18.25629 -17.71596 -17.38784 -17.07679 -16.55302 -16.36729 -16.26502 -15.88390 -15.84240 -15.60060 -15.51423 -15.14377 -14.94521 -14.64170 -14.60423 -14.21219 -14.11171 -13.96948 -13.77767 -13.56513 -13.32956 -12.69488 -12.61144 -12.42891 -12.22265 -12.13577 -12.07936 -11.87578 -11.75879 -11.72705 -11.08607 -11.02405 -11.00247 -10.95923 -10.78479 -10.37069 -9.93328 -9.38899 -5.31784 -1.15619 -0.40756 0.35698 0.50669 0.96843 1.01615 1.03397 1.29997 1.34793 1.74247 1.91064 2.02844 2.11400 2.14579 2.96125 2.98258 3.08910 3.17661 3.19638 3.21825 3.30442 3.39531 3.49581 3.53300 3.54507 3.61175 3.68488 3.86713 4.06775 4.11842 4.13468 4.28288 4.33634 4.36584 4.40618 4.43351 4.51876 4.58524 4.65163 4.65902 4.75264 4.83149 4.90001 5.09364 5.24933 5.40542 5.67453 5.76062 6.13490 6.31194 6.32394 6.91334 6.92424 7.10353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.066 4.066 3 Si 0.693 3.307 4 C -0.157 4.157 5 C -0.025 4.025 6 C -0.209 4.209 7 C 0.200 3.800 8 O -0.254 6.254 9 C 0.031 3.969 10 C 0.517 3.483 11 O -0.492 6.492 12 N -0.711 5.711 13 C 0.126 3.874 14 H 0.113 0.887 15 C -0.131 4.131 16 C -0.025 4.025 17 H 0.119 0.881 18 C 0.215 3.785 19 N -0.487 5.487 20 C -0.027 4.027 21 C -0.054 4.054 22 N -0.565 5.565 23 C -0.149 4.149 24 C -0.075 4.075 25 N 0.028 4.972 26 O -0.177 6.177 27 O -0.118 6.118 28 C 0.009 3.991 29 H 0.381 0.619 30 H 0.121 0.879 31 H -0.248 1.248 32 H -0.254 1.254 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.404 0.596 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.171 0.829 41 H 0.179 0.821 42 H 0.418 0.582 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 7.627 -2.629 8.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.593 3.407 4 C -0.159 4.159 5 C -0.043 4.043 6 C -0.228 4.228 7 C 0.150 3.850 8 O -0.163 6.163 9 C -0.048 4.048 10 C 0.301 3.699 11 O -0.364 6.364 12 N -0.365 5.365 13 C 0.021 3.979 14 H 0.131 0.869 15 C -0.170 4.170 16 C -0.045 4.045 17 H 0.137 0.863 18 C -0.049 4.049 19 N -0.206 5.206 20 C -0.175 4.175 21 C -0.188 4.188 22 N -0.169 5.169 23 C -0.189 4.189 24 C -0.159 4.159 25 N 0.548 4.452 26 O -0.386 6.386 27 O -0.342 6.342 28 C -0.010 4.010 29 H 0.229 0.771 30 H 0.138 0.862 31 H -0.173 1.173 32 H -0.179 1.179 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.189 0.811 41 H 0.196 0.804 42 H 0.257 0.743 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.305 8.389 -1.487 9.139 hybrid contribution 0.542 -1.611 -0.094 1.702 sum 3.847 6.779 -1.581 7.953 Atomic orbital electron populations 1.86563 1.16574 1.81615 1.49336 1.25100 0.85702 1.10264 0.96566 0.94899 0.80696 0.76959 0.88107 1.20322 1.02212 0.93980 0.99355 1.21273 0.91849 0.99831 0.91316 1.21277 1.06997 0.92696 1.01839 1.18682 0.89953 0.90804 0.85582 1.86496 1.62809 1.37481 1.29520 1.22717 0.96468 0.94895 0.90700 1.19825 0.78933 0.88161 0.82980 1.90873 1.52254 1.17081 1.76191 1.45436 1.52648 1.15747 1.22696 1.21830 0.95979 0.94657 0.85431 0.86867 1.23403 0.94140 1.02061 0.97441 1.21078 0.90527 1.00077 0.92826 0.86287 1.22916 1.00697 0.80812 1.00431 1.70236 1.09710 1.31199 1.09486 1.22419 1.01897 0.91556 1.01668 1.22840 0.98868 0.98975 0.98125 1.43266 1.32880 1.09801 1.30928 1.23556 0.96729 0.97007 1.01589 1.20586 1.10566 0.84017 1.00780 1.43342 0.99185 1.02296 1.00335 1.94560 1.35207 1.66728 1.42056 1.94693 1.54651 1.67570 1.17290 1.20840 0.93496 0.93558 0.93081 0.77116 0.86158 1.17273 1.17912 0.83380 0.82549 0.87941 0.87792 0.76075 0.89491 0.88283 0.81149 0.80433 0.74347 0.89319 0.89694 0.81798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.99 12.77 -35.23 -0.45 0.54 16 2 C -0.07 0.18 2.82 36.01 0.10 0.29 16 3 Si 0.69 -2.77 29.78 -169.99 -5.06 -7.83 16 4 C -0.16 0.38 5.39 -104.60 -0.56 -0.18 16 5 C -0.03 0.11 8.66 -39.61 -0.34 -0.24 16 6 C -0.21 0.81 9.04 -39.43 -0.36 0.45 16 7 C 0.20 0.02 6.67 -39.21 -0.26 -0.24 16 8 O -0.25 -0.36 7.68 -49.76 -0.38 -0.74 16 9 C 0.03 -0.11 5.22 36.01 0.19 0.08 16 10 C 0.52 -0.34 7.91 -10.98 -0.09 -0.43 16 11 O -0.49 -2.43 16.10 -14.35 -0.23 -2.66 16 12 N -0.71 2.75 5.26 -52.93 -0.28 2.47 16 13 C 0.13 -0.38 4.33 -67.03 -0.29 -0.67 16 14 H 0.11 -0.13 7.46 -51.93 -0.39 -0.52 16 15 C -0.13 0.47 7.38 -25.92 -0.19 0.28 16 16 C -0.02 0.07 4.16 -90.96 -0.38 -0.31 16 17 H 0.12 -0.41 8.14 -51.93 -0.42 -0.83 16 18 C 0.22 0.06 7.36 -155.42 -1.14 -1.08 16 19 N -0.49 -1.51 11.25 -10.82 -0.12 -1.63 16 20 C -0.03 -0.04 11.87 -17.81 -0.21 -0.25 16 21 C -0.05 0.03 12.04 -16.56 -0.20 -0.16 16 22 N -0.56 0.77 5.94 -10.23 -0.06 0.70 16 23 C -0.15 0.51 7.37 -25.83 -0.19 0.32 16 24 C -0.08 -0.17 6.86 -79.81 -0.55 -0.72 16 25 N 0.03 0.17 4.45 34.03 0.15 0.33 16 26 O -0.18 -1.23 18.45 -29.46 -0.54 -1.78 16 27 O -0.12 -0.96 17.24 -36.49 -0.63 -1.59 16 28 C 0.01 0.00 9.11 -39.61 -0.36 -0.36 16 29 H 0.38 -2.23 8.70 45.56 0.40 -1.83 16 30 H 0.12 -0.28 7.96 -51.93 -0.41 -0.69 16 31 H -0.25 0.04 7.11 56.52 0.40 0.44 16 32 H -0.25 0.55 7.11 56.52 0.40 0.95 16 33 H 0.15 -1.03 4.87 -52.48 -0.26 -1.28 16 34 H 0.16 -1.18 6.30 -52.49 -0.33 -1.51 16 35 H 0.10 -0.68 7.65 -51.93 -0.40 -1.08 16 36 H 0.10 -0.71 7.67 -51.93 -0.40 -1.11 16 37 H 0.40 -2.86 8.70 -40.82 -0.36 -3.21 16 38 H 0.09 -0.35 8.14 -51.93 -0.42 -0.77 16 39 H 0.10 -0.31 8.09 -51.93 -0.42 -0.73 16 40 H 0.17 -0.06 8.06 -52.48 -0.42 -0.48 16 41 H 0.18 -0.64 8.06 -52.49 -0.42 -1.06 16 42 H 0.42 -1.69 7.54 -40.82 -0.31 -2.00 16 43 H 0.09 -0.37 6.64 -51.93 -0.34 -0.72 16 44 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 45 H 0.16 0.05 7.61 -52.48 -0.40 -0.35 16 LS Contribution 389.08 15.07 5.86 5.86 Total: 0.00 -15.50 389.08 -11.51 -27.00 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -4.93 Total: -17.44 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -4.84 Total: -3.23 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -0.31 Total: 1.87 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -2.24 Total: -6.23 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: -5.06 Total: -7.83 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -15.50 -11.51 -27.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.164 kcal (2) G-P(sol) polarization free energy of solvation -15.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds