Wall clock time and date at job start Sun Mar 7 2021 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.47318 * 2 1 4 4 C 1.50700 * 109.47306 * 239.99822 * 2 1 3 5 5 C 1.38247 * 119.96827 * 119.97957 * 4 2 1 6 6 C 1.38295 * 120.10668 * 180.02562 * 5 4 2 7 7 C 1.38125 * 120.05606 * 359.67887 * 6 5 4 8 8 C 1.38750 * 119.94134 * 0.59838 * 7 6 5 9 9 O 1.35907 * 120.05483 * 179.70193 * 8 7 6 10 10 C 1.42899 * 116.99903 * 359.72243 * 9 8 7 11 11 C 1.50697 * 109.47043 * 180.02562 * 10 9 8 12 12 O 1.21279 * 120.00099 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99727 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99958 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.84690 * 336.19882 * 14 13 11 16 16 C 1.53776 * 113.69020 * 107.46295 * 14 13 11 17 17 C 1.53777 * 87.08220 * 89.13221 * 16 14 13 18 18 H 1.09013 * 113.68907 * 270.87274 * 17 16 14 19 19 C 1.50698 * 113.61797 * 139.98180 * 17 16 14 20 20 N 1.30500 * 125.65161 * 167.47410 * 19 17 16 21 21 C 1.34127 * 109.25894 * 180.02562 * 20 19 17 22 22 C 1.34665 * 108.01668 * 0.26753 * 21 20 19 23 23 N 1.35045 * 125.65255 * 347.50447 * 19 17 16 24 24 C 1.53777 * 87.08115 * 25.43184 * 17 16 14 25 25 C 1.38164 * 119.97213 * 300.00403 * 4 2 1 26 26 H 0.96701 * 113.99896 * 59.99763 * 1 2 3 27 27 H 1.09007 * 109.46941 * 119.99681 * 2 1 3 28 28 H 1.48507 * 109.99970 * 59.99852 * 3 2 1 29 29 H 1.48498 * 110.00201 * 181.31591 * 3 2 1 30 30 H 1.07993 * 119.94736 * 0.02562 * 5 4 2 31 31 H 1.07997 * 119.96726 * 179.97438 * 6 5 4 32 32 H 1.07992 * 120.02779 * 180.32184 * 7 6 5 33 33 H 1.08999 * 109.47250 * 60.00125 * 10 9 8 34 34 H 1.09004 * 109.46827 * 300.00282 * 10 9 8 35 35 H 0.96999 * 120.00429 * 359.97438 * 13 11 10 36 36 H 1.09005 * 113.61551 * 334.58160 * 16 14 13 37 37 H 1.09007 * 113.61553 * 203.67882 * 16 14 13 38 38 H 1.08002 * 125.98809 * 179.97438 * 21 20 19 39 39 H 1.08002 * 126.58770 * 179.69323 * 22 21 20 40 40 H 0.97005 * 126.39044 * 0.02562 * 23 19 17 41 41 H 1.08994 * 113.61350 * 89.12035 * 24 17 16 42 42 H 1.08997 * 113.61376 * 220.02212 * 24 17 16 43 43 H 1.07998 * 120.02487 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7258 -0.0378 -2.1402 6 6 3.1879 -0.6869 -3.2706 7 6 2.8621 -2.0111 -3.4898 8 6 2.0602 -2.6866 -2.5811 9 8 1.7332 -3.9878 -2.7976 10 6 2.2450 -4.5964 -3.9849 11 6 1.7815 -6.0286 -4.0552 12 8 1.0821 -6.4835 -3.1750 13 7 2.1450 -6.8042 -5.0957 14 6 1.6949 -8.1967 -5.1638 15 1 1.4465 -8.6095 -4.1860 16 6 0.6149 -8.4455 -6.2298 17 6 1.7628 -8.7128 -7.2175 18 1 2.1165 -7.8183 -7.7305 19 6 1.4954 -9.8595 -8.1580 20 7 2.1887 -10.1447 -9.2262 21 6 1.6643 -11.2283 -9.8177 22 6 0.6023 -11.6263 -9.0916 23 7 0.4982 -10.7620 -8.0354 24 6 2.6160 -9.1019 -5.9987 25 6 1.5972 -2.0332 -1.4485 26 1 -0.3933 0.4417 -0.7650 27 1 1.7923 -0.5138 0.8901 28 1 1.5615 2.4679 1.2085 29 1 3.5346 1.7703 -0.0320 30 1 2.9859 0.9960 -1.9679 31 1 3.8080 -0.1591 -3.9800 32 1 3.2276 -2.5190 -4.3700 33 1 3.3345 -4.5672 -3.9676 34 1 1.8809 -4.0538 -4.8573 35 1 2.7047 -6.4405 -5.7995 36 1 0.0280 -7.5594 -6.4719 37 1 -0.0022 -9.3216 -6.0301 38 1 2.0271 -11.6964 -10.7208 39 1 -0.0422 -12.4672 -9.3012 40 1 -0.1700 -10.7894 -7.3327 41 1 2.5461 -10.1573 -5.7358 42 1 3.6446 -8.7456 -6.0542 43 1 0.9765 -2.5581 -0.7374 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_4860298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:21:49 Heat of formation + Delta-G solvation = 17.490968 kcal Electronic energy + Delta-G solvation = -26422.098589 eV Core-core repulsion = 22436.452188 eV Total energy + Delta-G solvation = -3985.646401 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.10444 -41.63905 -40.95597 -39.55224 -38.73211 -37.22105 -34.67059 -33.44413 -32.45650 -31.72130 -30.70463 -29.19479 -26.85969 -26.83579 -26.04336 -23.66217 -23.03918 -22.46426 -21.79750 -21.64503 -20.51390 -19.38512 -19.01937 -18.43741 -17.66857 -17.46236 -17.32323 -17.02487 -16.69224 -16.21303 -16.14826 -15.73620 -15.63097 -15.39786 -15.25252 -14.95203 -14.70959 -14.56876 -14.45033 -14.19292 -14.01520 -13.71367 -13.50250 -13.33741 -12.92678 -12.62036 -12.51995 -12.11501 -11.99696 -11.90660 -11.67365 -11.53911 -11.07124 -11.04756 -11.01576 -10.50834 -10.24707 -9.91325 -9.35336 -9.28104 -4.98630 0.21235 0.39488 1.08940 1.27861 1.38274 1.45094 1.65358 1.97310 2.11757 2.20594 2.55824 2.68161 3.27443 3.35959 3.46040 3.52740 3.59252 3.67719 3.76590 3.85119 4.01341 4.07326 4.09376 4.13662 4.23690 4.25323 4.36048 4.49822 4.52489 4.53876 4.59548 4.63374 4.64563 4.76856 4.85979 4.94433 4.98658 5.02111 5.14265 5.24958 5.37602 5.43857 5.45702 5.69874 5.78808 6.25994 6.43287 6.47697 6.74822 7.07592 7.12544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.795 3.205 4 C -0.085 4.085 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.037 3.963 11 C 0.517 3.483 12 O -0.570 6.570 13 N -0.692 5.692 14 C 0.122 3.878 15 H 0.092 0.908 16 C -0.142 4.142 17 C -0.021 4.021 18 H 0.127 0.873 19 C 0.208 3.792 20 N -0.529 5.529 21 C -0.063 4.063 22 C -0.046 4.046 23 N -0.559 5.559 24 C -0.121 4.121 25 C -0.150 4.150 26 H 0.395 0.605 27 H 0.101 0.899 28 H -0.302 1.302 29 H -0.280 1.280 30 H 0.149 0.851 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.423 0.577 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.177 0.823 39 H 0.207 0.793 40 H 0.431 0.569 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 2.102 -6.448 6.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.085 4.085 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.069 3.931 9 O -0.237 6.237 10 C -0.041 4.041 11 C 0.304 3.696 12 O -0.448 6.448 13 N -0.346 5.346 14 C 0.017 3.983 15 H 0.110 0.890 16 C -0.181 4.181 17 C -0.041 4.041 18 H 0.145 0.855 19 C -0.056 4.056 20 N -0.249 5.249 21 C -0.210 4.210 22 C -0.180 4.180 23 N -0.163 5.163 24 C -0.160 4.160 25 C -0.169 4.169 26 H 0.245 0.755 27 H 0.118 0.882 28 H -0.230 1.230 29 H -0.207 1.207 30 H 0.166 0.834 31 H 0.180 0.820 32 H 0.179 0.821 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.261 0.739 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.194 0.806 39 H 0.224 0.776 40 H 0.271 0.729 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.044 2.318 -5.074 5.941 hybrid contribution -0.795 -1.483 0.462 1.745 sum 1.248 0.835 -4.612 4.850 Atomic orbital electron populations 1.86475 1.17392 1.82299 1.50455 1.25421 0.85306 1.11835 0.96902 0.93513 0.77723 0.74170 0.84553 1.20204 0.97913 0.93328 0.97073 1.21220 1.00163 1.00794 0.95366 1.21343 0.97219 0.93531 0.96702 1.21640 1.02288 0.96885 1.01237 1.19185 0.95738 0.82891 0.95277 1.86120 1.71376 1.23285 1.42878 1.22738 1.01995 0.90517 0.88836 1.20531 0.79611 0.88010 0.81461 1.90771 1.38760 1.75302 1.39988 1.45329 1.53395 1.11229 1.24660 1.21739 0.95766 0.81458 0.99382 0.89017 1.23501 0.96556 1.03390 0.94639 1.21150 0.98307 0.93631 0.91002 0.85480 1.23326 0.89377 0.95885 0.97038 1.70174 1.29719 1.16835 1.08208 1.22743 0.97748 0.97091 1.03391 1.23277 1.03544 1.00001 0.91191 1.43292 1.26259 1.23497 1.23299 1.23326 0.99690 1.00426 0.92558 1.20280 1.04073 0.94922 0.97611 0.75455 0.88183 1.23017 1.20671 0.83406 0.81955 0.82095 0.85656 0.85423 0.73906 0.89820 0.88405 0.80559 0.77597 0.72851 0.88557 0.88715 0.87097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.73 12.77 -148.98 -1.90 -3.63 16 2 C -0.09 -0.15 2.82 71.24 0.20 0.05 16 3 Si 0.80 -1.72 29.79 68.60 2.04 0.33 16 4 C -0.08 -0.17 5.39 -19.88 -0.11 -0.28 16 5 C -0.16 0.39 8.67 22.29 0.19 0.58 16 6 C -0.07 0.33 10.04 22.26 0.22 0.55 16 7 C -0.20 0.65 9.04 22.37 0.20 0.85 16 8 C 0.11 0.43 6.69 22.51 0.15 0.58 16 9 O -0.32 -2.01 9.67 -73.47 -0.71 -2.72 16 10 C 0.04 -0.15 5.22 71.23 0.37 0.23 16 11 C 0.52 0.67 7.91 87.66 0.69 1.36 16 12 O -0.57 -7.52 16.10 16.01 0.26 -7.26 16 13 N -0.69 4.23 5.27 -440.05 -2.32 1.91 16 14 C 0.12 -0.54 4.32 45.51 0.20 -0.35 16 15 H 0.09 0.03 7.46 -2.39 -0.02 0.01 16 16 C -0.14 0.88 7.36 31.12 0.23 1.11 16 17 C -0.02 0.10 4.17 -11.02 -0.05 0.06 16 18 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 19 C 0.21 0.24 7.36 138.13 1.02 1.26 16 20 N -0.53 -3.91 11.25 -188.13 -2.12 -6.03 16 21 C -0.06 -0.25 11.87 83.52 0.99 0.74 16 22 C -0.05 0.06 12.04 83.09 1.00 1.06 16 23 N -0.56 1.53 5.94 -186.28 -1.11 0.42 16 24 C -0.12 0.75 7.38 31.12 0.23 0.98 16 25 C -0.15 -0.95 9.55 22.37 0.21 -0.74 16 26 H 0.40 -2.19 8.70 -74.06 -0.64 -2.84 16 27 H 0.10 0.39 7.96 -2.38 -0.02 0.37 16 28 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 29 H -0.28 -0.42 7.11 99.48 0.71 0.28 16 30 H 0.15 -1.02 4.87 -2.91 -0.01 -1.04 16 31 H 0.16 -1.77 8.06 -2.91 -0.02 -1.80 16 32 H 0.16 -1.66 6.30 -2.91 -0.02 -1.68 16 33 H 0.13 -1.29 7.65 -2.39 -0.02 -1.30 16 34 H 0.13 -1.36 7.67 -2.38 -0.02 -1.38 16 35 H 0.42 -5.58 8.70 -92.71 -0.81 -6.39 16 36 H 0.08 -0.45 8.14 -2.38 -0.02 -0.47 16 37 H 0.10 -0.80 6.64 -2.38 -0.02 -0.82 16 38 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 39 H 0.21 -1.72 8.06 -2.91 -0.02 -1.74 16 40 H 0.43 -3.65 7.53 -92.70 -0.70 -4.35 16 41 H 0.10 -0.51 8.09 -2.39 -0.02 -0.53 16 42 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 43 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 Total: 0.00 -32.85 363.05 -1.12 -33.98 By element: Atomic # 1 Polarization: -24.02 SS G_CDS: -1.03 Total: -25.05 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 5.76 Total: 8.05 kcal Atomic # 7 Polarization: 1.85 SS G_CDS: -5.54 Total: -3.69 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -2.35 Total: -13.61 kcal Atomic # 14 Polarization: -1.72 SS G_CDS: 2.04 Total: 0.33 kcal Total: -32.85 -1.12 -33.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_4860298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.467 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds