Wall clock time and date at job start Sun Mar 7 2021 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35983 * 117.00445 * 2 1 4 4 C 1.38672 * 120.00071 * 179.97438 * 3 2 1 5 5 C 1.38161 * 119.99679 * 180.02562 * 4 3 2 6 6 C 1.50698 * 119.99649 * 180.02562 * 5 4 3 7 7 O 1.42897 * 109.47238 * 104.97559 * 6 5 4 8 8 Si 1.86309 * 109.47348 * 344.97520 * 6 5 4 9 9 C 1.38668 * 119.99942 * 359.97438 * 5 4 3 10 10 O 1.35984 * 119.99699 * 180.02562 * 9 5 4 11 11 C 1.42905 * 116.99835 * 180.02562 * 10 9 5 12 12 C 1.50707 * 109.47006 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99651 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99920 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00071 * 180.02562 * 14 12 11 16 16 H 1.08999 * 112.84640 * 336.19080 * 15 14 12 17 17 C 1.53778 * 113.69512 * 107.46146 * 15 14 12 18 18 C 1.53784 * 87.08081 * 89.12825 * 17 15 14 19 19 H 1.09004 * 113.61451 * 270.88641 * 18 17 15 20 20 C 1.50692 * 113.61665 * 139.98095 * 18 17 15 21 21 N 1.30499 * 125.65598 * 167.52392 * 20 18 17 22 22 C 1.34124 * 109.26185 * 179.97438 * 21 20 18 23 23 C 1.34671 * 108.01932 * 0.02562 * 22 21 20 24 24 N 1.35047 * 125.64653 * 347.22426 * 20 18 17 25 25 C 1.53778 * 113.61391 * 205.00280 * 15 14 12 26 26 C 1.38721 * 120.00249 * 0.27864 * 9 5 4 27 27 C 1.38104 * 119.99549 * 359.44768 * 26 9 5 28 28 H 1.09000 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47437 * 300.00315 * 1 2 3 30 30 H 1.09007 * 109.46791 * 59.99713 * 1 2 3 31 31 H 1.07995 * 120.00430 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.47412 * 224.97496 * 6 5 4 33 33 H 0.96696 * 114.00226 * 59.99802 * 7 6 5 34 34 H 1.48499 * 109.99768 * 178.68456 * 8 6 5 35 35 H 1.48496 * 109.99533 * 300.00189 * 8 6 5 36 36 H 1.08995 * 109.47480 * 60.00041 * 11 10 9 37 37 H 1.09000 * 109.46845 * 299.99855 * 11 10 9 38 38 H 0.97005 * 119.99999 * 359.97438 * 14 12 11 39 39 H 1.08993 * 113.61229 * 334.58149 * 17 15 14 40 40 H 1.09000 * 113.61263 * 203.67798 * 17 15 14 41 41 H 1.08000 * 125.99023 * 180.02562 * 22 21 20 42 42 H 1.07998 * 126.59142 * 179.97438 * 23 22 21 43 43 H 0.97001 * 126.40215 * 359.97438 * 24 20 18 44 44 H 1.08998 * 113.61879 * 156.24852 * 25 15 14 45 45 H 1.08999 * 113.61887 * 25.33959 * 25 15 14 46 46 H 1.08002 * 119.99956 * 179.70065 * 26 9 5 47 47 H 1.08007 * 119.99609 * 180.30050 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2841 0.0005 5 6 4.0585 2.5151 0.0011 6 6 5.5634 2.5938 0.0011 7 8 6.0209 2.9670 -1.3002 8 14 6.2724 0.9320 0.4557 9 6 3.3033 3.6780 0.0005 10 8 3.9207 4.8896 0.0005 11 6 3.0807 6.0458 0.0005 12 6 3.9350 7.2873 -0.0001 13 8 5.1441 7.1914 0.0000 14 7 3.3555 8.5041 -0.0007 15 6 4.1859 9.7110 -0.0019 16 1 5.1830 9.5390 0.4033 17 6 4.1875 10.4587 -1.3457 18 6 2.9663 11.2352 -0.8255 19 1 2.0145 10.7543 -1.0512 20 6 2.9838 12.6986 -1.1845 21 7 1.9779 13.5221 -1.0700 22 6 2.3552 14.7415 -1.4816 23 6 3.6438 14.6711 -1.8665 24 7 4.0448 13.3766 -1.6729 25 6 3.4833 10.9427 0.5930 26 6 1.9180 3.6055 0.0053 27 6 1.2910 2.3750 -0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0194 0.3783 0.0014 32 1 5.8883 3.3385 0.7277 33 1 5.6903 3.8239 -1.6027 34 1 7.7560 0.9880 0.4283 35 1 5.8040 0.5326 1.8071 36 1 2.4515 6.0378 0.8905 37 1 2.4515 6.0377 -0.8895 38 1 2.3884 8.5807 -0.0012 39 1 3.9669 9.8200 -2.2009 40 1 5.0689 11.0817 -1.4976 41 1 1.7344 15.6251 -1.5011 42 1 4.2463 15.4811 -2.2500 43 1 4.9259 13.0138 -1.8542 44 1 4.1720 11.6982 0.9711 45 1 2.6941 10.6949 1.3028 46 1 1.3298 4.5113 0.0098 47 1 0.2124 2.3185 -0.0021 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_4974302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:21:52 Heat of formation + Delta-G solvation = -18.859569 kcal Electronic energy + Delta-G solvation = -31160.511902 eV Core-core repulsion = 26699.069413 eV Total energy + Delta-G solvation = -4461.442489 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.156 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.11422 -41.84845 -41.19064 -40.09306 -39.20392 -38.06995 -36.92379 -34.66480 -33.45493 -32.81078 -31.21943 -30.61279 -29.31571 -27.95702 -26.84890 -26.59144 -26.13141 -23.85788 -22.63210 -22.41033 -21.90639 -21.78322 -20.53290 -19.55523 -19.08886 -18.76020 -18.42623 -18.02978 -17.48867 -17.43937 -17.02237 -16.60655 -16.23813 -16.10729 -15.85781 -15.70525 -15.47358 -15.42663 -15.35506 -15.10849 -14.60217 -14.57604 -14.39033 -14.19217 -14.08524 -13.67993 -13.53013 -13.49830 -13.36386 -13.03529 -12.54290 -12.50624 -12.30444 -12.02991 -11.91339 -11.54788 -11.44079 -11.31009 -11.23857 -11.06243 -11.03102 -11.02701 -10.24414 -10.09286 -9.36429 -8.81861 -4.93429 0.06921 0.33781 1.07841 1.33609 1.39024 1.40483 1.58184 1.91202 2.10570 2.19468 2.35272 2.53764 2.56179 3.26564 3.35116 3.44366 3.53598 3.58383 3.73692 3.76213 3.86065 3.95381 4.06499 4.08630 4.09951 4.13996 4.21583 4.22737 4.28212 4.45205 4.46108 4.51508 4.52881 4.58635 4.63237 4.70507 4.76244 4.80240 4.85227 4.93396 4.97774 5.01316 5.12658 5.13274 5.21406 5.40878 5.44887 5.77675 6.12467 6.38550 6.45647 6.46702 6.52806 7.07562 7.11435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.333 6.333 3 C 0.090 3.910 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.080 4.080 7 O -0.545 6.545 8 Si 0.809 3.191 9 C 0.090 3.910 10 O -0.316 6.316 11 C 0.036 3.964 12 C 0.518 3.482 13 O -0.567 6.567 14 N -0.693 5.693 15 C 0.124 3.876 16 H 0.092 0.908 17 C -0.141 4.141 18 C -0.021 4.021 19 H 0.127 0.873 20 C 0.209 3.791 21 N -0.530 5.530 22 C -0.063 4.063 23 C -0.046 4.046 24 N -0.559 5.559 25 C -0.122 4.122 26 C -0.159 4.159 27 C -0.162 4.162 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.152 0.848 32 H 0.063 0.937 33 H 0.372 0.628 34 H -0.294 1.294 35 H -0.265 1.265 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.422 0.578 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.177 0.823 42 H 0.207 0.793 43 H 0.431 0.569 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.168 0.832 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 1.549 -1.228 6.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.045 3.955 4 C -0.137 4.137 5 C -0.120 4.120 6 C -0.188 4.188 7 O -0.351 6.351 8 Si 0.711 3.289 9 C 0.045 3.955 10 O -0.229 6.229 11 C -0.041 4.041 12 C 0.305 3.695 13 O -0.445 6.445 14 N -0.347 5.347 15 C 0.018 3.982 16 H 0.110 0.890 17 C -0.181 4.181 18 C -0.041 4.041 19 H 0.145 0.855 20 C -0.056 4.056 21 N -0.250 5.250 22 C -0.210 4.210 23 C -0.180 4.180 24 N -0.164 5.164 25 C -0.161 4.161 26 C -0.178 4.178 27 C -0.180 4.180 28 H 0.132 0.868 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.169 0.831 32 H 0.080 0.920 33 H 0.220 0.780 34 H -0.222 1.222 35 H -0.190 1.190 36 H 0.141 0.859 37 H 0.145 0.855 38 H 0.260 0.740 39 H 0.102 0.898 40 H 0.115 0.885 41 H 0.194 0.806 42 H 0.224 0.776 43 H 0.272 0.728 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.185 0.815 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.395 0.175 -0.337 5.409 hybrid contribution 0.192 2.410 -0.058 2.419 sum -5.204 2.585 -0.396 5.824 Atomic orbital electron populations 1.23354 0.76392 1.05608 1.02355 1.86086 1.23380 1.26352 1.88936 1.18983 0.91950 0.85357 0.99203 1.20184 0.92417 0.96810 1.04283 1.19448 0.96008 0.90996 1.05512 1.25487 0.92814 1.12421 0.88029 1.86661 1.74196 1.42261 1.31984 0.92221 0.76245 0.79140 0.81331 1.18776 0.91691 0.84237 1.00754 1.86080 1.35502 1.11899 1.89459 1.22726 0.92628 0.81830 1.06960 1.20490 0.88309 0.85301 0.75426 1.90778 1.16611 1.87270 1.49796 1.45335 1.11178 1.03573 1.74629 1.21718 0.95762 0.83689 0.97018 0.88981 1.23497 0.97666 0.98559 0.98331 1.21153 1.00946 0.84662 0.97372 0.85515 1.23327 0.83549 0.96718 1.01984 1.70172 1.29843 1.02499 1.22496 1.22743 0.95514 0.96551 1.06172 1.23282 0.98139 0.87966 1.08628 1.43295 1.14153 1.09325 1.49590 1.23331 1.00847 0.96036 0.95859 1.21377 0.92075 1.00017 1.04289 1.21422 1.01592 0.90962 1.04056 0.86754 0.91565 0.91408 0.83114 0.91982 0.77961 1.22189 1.19047 0.85899 0.85489 0.73987 0.89779 0.88463 0.80563 0.77597 0.72847 0.88618 0.88772 0.81472 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.10 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.65 10.50 -93.35 -0.98 -1.63 16 3 C 0.09 0.21 6.69 22.49 0.15 0.36 16 4 C -0.12 -0.48 8.59 22.36 0.19 -0.29 16 5 C -0.12 -0.64 5.27 -19.78 -0.10 -0.75 16 6 C -0.08 -0.60 2.33 71.24 0.17 -0.44 16 7 O -0.54 -5.01 12.65 -148.98 -1.89 -6.89 16 8 Si 0.81 4.08 30.17 68.60 2.07 6.15 16 9 C 0.09 0.24 6.62 22.49 0.15 0.38 16 10 O -0.32 -1.03 8.56 -74.33 -0.64 -1.67 16 11 C 0.04 -0.21 5.22 71.24 0.37 0.16 16 12 C 0.52 -0.22 7.91 87.66 0.69 0.47 16 13 O -0.57 -6.18 16.10 15.99 0.26 -5.92 16 14 N -0.69 4.94 5.27 -440.04 -2.32 2.63 16 15 C 0.12 -0.64 4.32 45.52 0.20 -0.44 16 16 H 0.09 -0.04 7.46 -2.39 -0.02 -0.06 16 17 C -0.14 0.95 7.36 31.12 0.23 1.18 16 18 C -0.02 0.11 4.17 -11.01 -0.05 0.07 16 19 H 0.13 -0.87 8.14 -2.39 -0.02 -0.89 16 20 C 0.21 0.21 7.36 138.12 1.02 1.22 16 21 N -0.53 -3.88 11.25 -188.14 -2.12 -5.99 16 22 C -0.06 -0.25 11.87 83.52 0.99 0.74 16 23 C -0.05 0.07 12.04 83.09 1.00 1.07 16 24 N -0.56 1.60 5.94 -186.27 -1.11 0.49 16 25 C -0.12 0.80 7.38 31.12 0.23 1.03 16 26 C -0.16 0.48 9.03 22.35 0.20 0.69 16 27 C -0.16 0.37 9.03 22.35 0.20 0.57 16 28 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 29 H 0.07 -0.54 7.66 -2.39 -0.02 -0.56 16 30 H 0.07 -0.56 7.66 -2.38 -0.02 -0.58 16 31 H 0.15 0.20 5.13 -2.91 -0.01 0.19 16 32 H 0.06 0.62 7.82 -2.39 -0.02 0.60 16 33 H 0.37 2.42 8.59 -74.06 -0.64 1.78 16 34 H -0.29 -3.34 7.11 99.48 0.71 -2.64 16 35 H -0.26 -1.87 7.11 99.48 0.71 -1.17 16 36 H 0.12 -1.41 7.65 -2.39 -0.02 -1.43 16 37 H 0.13 -1.54 7.67 -2.39 -0.02 -1.56 16 38 H 0.42 -5.88 8.70 -92.70 -0.81 -6.69 16 39 H 0.08 -0.51 8.14 -2.39 -0.02 -0.52 16 40 H 0.10 -0.83 6.64 -2.39 -0.02 -0.85 16 41 H 0.18 0.14 8.06 -2.91 -0.02 0.11 16 42 H 0.21 -1.73 8.06 -2.91 -0.02 -1.75 16 43 H 0.43 -3.72 7.53 -92.71 -0.70 -4.42 16 44 H 0.10 -0.53 8.09 -2.39 -0.02 -0.55 16 45 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.17 -1.80 6.29 -2.91 -0.02 -1.82 16 47 H 0.16 -1.27 6.29 -2.91 -0.02 -1.29 16 Total: 0.00 -30.63 391.53 -1.01 -31.64 By element: Atomic # 1 Polarization: -24.78 SS G_CDS: -1.05 Total: -25.83 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.75 Total: 7.03 kcal Atomic # 7 Polarization: 2.66 SS G_CDS: -5.54 Total: -2.88 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -3.24 Total: -16.11 kcal Atomic # 14 Polarization: 4.08 SS G_CDS: 2.07 Total: 6.15 kcal Total: -30.63 -1.01 -31.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_4974302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.780 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds