Wall clock time and date at job start Sun Mar 7 2021 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47045 * 2 1 4 4 C 1.50695 * 109.47293 * 120.00291 * 2 1 3 5 5 C 1.35453 * 125.56434 * 244.97827 * 4 2 1 6 6 C 1.39828 * 107.86576 * 180.02562 * 5 4 2 7 7 C 1.37870 * 107.08722 * 359.75451 * 6 5 4 8 8 C 1.46684 * 126.23813 * 180.23386 * 7 6 5 9 9 O 1.21690 * 119.99554 * 0.18180 * 8 7 6 10 10 N 1.34767 * 120.00098 * 180.17546 * 8 7 6 11 11 C 1.46504 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84766 * 336.20264 * 11 10 8 13 13 C 1.53782 * 113.61361 * 107.50519 * 11 10 8 14 14 C 1.53778 * 87.08083 * 89.11931 * 13 11 10 15 15 H 1.09004 * 113.69255 * 270.87416 * 14 13 11 16 16 C 1.50700 * 113.61433 * 139.98307 * 14 13 11 17 17 N 1.30495 * 125.65018 * 167.19469 * 16 14 13 18 18 C 1.34123 * 109.26064 * 179.89165 * 17 16 14 19 19 C 1.34673 * 108.01516 * 0.37358 * 18 17 16 20 20 N 1.35035 * 125.64926 * 347.50157 * 16 14 13 21 21 C 1.53777 * 113.61796 * 205.00462 * 11 10 8 22 22 N 1.35537 * 125.56451 * 64.99901 * 4 2 1 23 23 H 0.96703 * 113.99967 * 59.99866 * 1 2 3 24 24 H 1.09008 * 109.46794 * 240.00092 * 2 1 3 25 25 H 1.48500 * 110.00017 * 59.99931 * 3 2 1 26 26 H 1.48500 * 109.99949 * 181.32029 * 3 2 1 27 27 H 1.08003 * 126.06719 * 359.97438 * 5 4 2 28 28 H 1.08007 * 126.45721 * 180.02562 * 6 5 4 29 29 H 0.97005 * 120.00219 * 0.02562 * 10 8 7 30 30 H 1.08997 * 113.61555 * 203.66891 * 13 11 10 31 31 H 1.09001 * 113.61393 * 334.56735 * 13 11 10 32 32 H 1.07996 * 125.99843 * 180.11600 * 18 17 16 33 33 H 1.08003 * 126.58840 * 179.81602 * 19 18 17 34 34 H 0.97004 * 126.40039 * 359.93860 * 20 16 14 35 35 H 1.09002 * 113.61227 * 25.42801 * 21 11 10 36 36 H 1.09001 * 113.61648 * 156.25479 * 21 11 10 37 37 H 0.97001 * 125.67560 * 359.95296 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6334 -0.1395 2.2383 6 6 2.9085 -1.1312 3.1849 7 6 2.3493 -2.3021 2.7191 8 6 2.3845 -3.6065 3.3892 9 8 2.9447 -3.7238 4.4631 10 7 1.7963 -4.6748 2.8157 11 6 1.8319 -5.9777 3.4848 12 1 2.6649 -6.0731 4.1813 13 6 0.4784 -6.4026 4.0782 14 6 0.1739 -7.0503 2.7171 15 1 -0.3061 -6.3754 2.0084 16 6 -0.5263 -8.3804 2.8246 17 7 -1.1012 -9.0189 1.8424 18 6 -1.6180 -10.1674 2.3037 19 6 -1.3604 -10.2396 3.6236 20 7 -0.6679 -9.1062 3.9545 21 6 1.6947 -7.1687 2.5218 22 7 1.7549 -2.0251 1.5089 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 -0.8901 25 1 1.5615 2.4679 1.2085 26 1 3.5346 1.7703 -0.0322 27 1 2.9290 0.8975 2.2995 28 1 3.4523 -1.0030 4.1092 29 1 1.3500 -4.5813 1.9595 30 1 0.5653 -7.1205 4.8937 31 1 -0.1754 -5.5643 4.3189 32 1 -2.1511 -10.9032 1.7200 33 1 -1.6450 -11.0385 4.2923 34 1 -0.3398 -8.8690 4.8360 35 1 2.0228 -6.9488 1.5058 36 1 2.1154 -8.0958 2.9112 37 1 1.2843 -2.6635 0.9503 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16970406_6580494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:22:13 Heat of formation + Delta-G solvation = 71.389567 kcal Electronic energy + Delta-G solvation = -22023.373216 eV Core-core repulsion = 18577.084074 eV Total energy + Delta-G solvation = -3446.289142 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.14230 -42.54582 -40.96415 -39.12249 -37.77799 -34.70426 -33.44056 -32.23172 -31.58669 -30.54866 -27.30642 -27.02984 -26.00050 -23.52487 -22.55048 -21.84853 -21.63857 -21.19143 -20.55650 -19.73435 -19.00509 -18.63906 -17.26361 -16.92059 -16.43832 -16.13994 -15.92408 -15.70128 -15.52017 -15.17801 -15.07889 -14.77783 -14.61533 -14.53114 -14.31110 -13.78604 -13.76020 -13.54281 -13.48363 -12.76756 -12.63183 -12.04785 -12.03587 -11.69135 -11.23534 -11.00240 -10.98341 -10.61111 -10.32954 -10.11753 -9.36926 -9.29533 -5.07606 0.30068 1.04833 1.07622 1.46455 1.64974 1.82494 1.94022 2.04051 2.10056 2.15698 2.31058 3.11732 3.17023 3.22755 3.42260 3.58690 3.69687 3.71635 3.89024 4.04915 4.08684 4.18616 4.35171 4.37007 4.40151 4.45328 4.55074 4.62550 4.69587 4.78562 4.85885 4.94807 5.01368 5.11628 5.31359 5.56460 5.76155 5.78003 6.14695 6.33114 6.34172 6.40187 7.03303 7.12542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.060 4.060 3 Si 0.717 3.283 4 C 0.071 3.929 5 C -0.206 4.206 6 C -0.094 4.094 7 C -0.052 4.052 8 C 0.596 3.404 9 O -0.521 6.521 10 N -0.715 5.715 11 C 0.126 3.874 12 H 0.114 0.886 13 C -0.150 4.150 14 C -0.025 4.025 15 H 0.117 0.883 16 C 0.217 3.783 17 N -0.487 5.487 18 C -0.027 4.027 19 C -0.055 4.055 20 N -0.565 5.565 21 C -0.132 4.132 22 N -0.521 5.521 23 H 0.387 0.613 24 H 0.076 0.924 25 H -0.247 1.247 26 H -0.252 1.252 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.397 0.603 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.418 0.582 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 0.862 -3.739 4.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.356 6.356 2 C -0.170 4.170 3 Si 0.616 3.384 4 C -0.047 4.047 5 C -0.231 4.231 6 C -0.120 4.120 7 C -0.165 4.165 8 C 0.384 3.616 9 O -0.396 6.396 10 N -0.366 5.366 11 C 0.020 3.980 12 H 0.131 0.869 13 C -0.189 4.189 14 C -0.045 4.045 15 H 0.135 0.865 16 C -0.047 4.047 17 N -0.206 5.206 18 C -0.175 4.175 19 C -0.189 4.189 20 N -0.169 5.169 21 C -0.171 4.171 22 N -0.118 5.118 23 H 0.236 0.764 24 H 0.094 0.906 25 H -0.172 1.172 26 H -0.176 1.176 27 H 0.161 0.839 28 H 0.172 0.828 29 H 0.231 0.769 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.189 0.811 33 H 0.196 0.804 34 H 0.256 0.744 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -0.441 1.127 -2.882 3.126 hybrid contribution -0.448 -1.315 0.718 1.564 sum -0.890 -0.188 -2.165 2.348 Atomic orbital electron populations 1.86486 1.17000 1.82020 1.50112 1.24531 0.85902 1.11412 0.95174 0.95115 0.80723 0.75490 0.87087 1.19966 1.03243 0.83692 0.97814 1.20595 1.07217 0.99799 0.95467 1.21293 1.00704 0.89992 1.00036 1.20363 1.10172 0.95856 0.90130 1.16991 0.78053 0.81971 0.84549 1.90875 1.43888 1.84146 1.20649 1.45537 1.58057 1.08643 1.24408 1.21787 0.98783 0.81819 0.95609 0.86851 1.23526 0.98135 1.01123 0.96113 1.21064 0.94536 0.89684 0.99255 0.86458 1.22893 1.02902 0.96801 0.82130 1.70233 1.13656 1.06833 1.29925 1.22421 1.05188 0.97223 0.92684 1.22839 1.04287 0.92923 0.98813 1.43265 1.44147 1.17820 1.11629 1.23406 0.94168 0.98442 1.01069 1.41921 1.43087 1.09337 1.17430 0.76410 0.90590 1.17163 1.17640 0.83863 0.82797 0.76892 0.89282 0.89707 0.81131 0.80417 0.74356 0.89658 0.88231 0.74492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.84 12.86 -35.23 -0.45 0.39 16 2 C -0.06 0.10 3.07 36.00 0.11 0.21 16 3 Si 0.72 -1.71 30.56 -169.99 -5.19 -6.91 16 4 C 0.07 0.09 6.50 -81.95 -0.53 -0.44 16 5 C -0.21 -0.51 9.32 -39.98 -0.37 -0.89 16 6 C -0.09 -0.30 10.65 -39.12 -0.42 -0.71 16 7 C -0.05 -0.12 7.06 -81.98 -0.58 -0.70 16 8 C 0.60 1.55 7.79 -12.86 -0.10 1.45 16 9 O -0.52 -3.21 16.48 5.20 0.09 -3.13 16 10 N -0.72 0.63 5.26 -54.32 -0.29 0.34 16 11 C 0.13 -0.16 4.32 -67.12 -0.29 -0.45 16 12 H 0.11 0.01 7.46 -51.93 -0.39 -0.38 16 13 C -0.15 0.30 7.35 -25.92 -0.19 0.11 16 14 C -0.03 0.03 4.17 -90.96 -0.38 -0.35 16 15 H 0.12 -0.19 8.14 -51.93 -0.42 -0.61 16 16 C 0.22 0.27 7.36 -155.43 -1.14 -0.87 16 17 N -0.49 -1.94 11.25 -10.82 -0.12 -2.06 16 18 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 19 C -0.05 0.00 12.04 -16.56 -0.20 -0.20 16 20 N -0.56 0.34 5.94 -10.23 -0.06 0.28 16 21 C -0.13 0.27 7.37 -25.92 -0.19 0.08 16 22 N -0.52 -0.11 5.99 -5.69 -0.03 -0.15 16 23 H 0.39 -2.52 8.74 45.56 0.40 -2.13 16 24 H 0.08 -0.28 7.96 -51.92 -0.41 -0.69 16 25 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 26 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 27 H 0.14 0.23 6.19 -52.48 -0.32 -0.09 16 28 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 29 H 0.40 -1.30 7.83 -40.82 -0.32 -1.62 16 30 H 0.09 -0.29 6.64 -51.93 -0.34 -0.63 16 31 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.17 0.04 8.06 -52.49 -0.42 -0.38 16 33 H 0.18 -0.55 8.06 -52.48 -0.42 -0.97 16 34 H 0.42 -1.40 7.53 -40.82 -0.31 -1.71 16 35 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.10 -0.20 8.10 -51.93 -0.42 -0.62 16 37 H 0.42 -1.10 8.19 -40.82 -0.33 -1.44 16 LS Contribution 318.66 15.07 4.80 4.80 Total: 0.00 -11.50 318.66 -9.95 -21.44 By element: Atomic # 1 Polarization: -7.81 SS G_CDS: -4.19 Total: -11.99 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -4.50 Total: -3.02 kcal Atomic # 7 Polarization: -1.08 SS G_CDS: -0.50 Total: -1.58 kcal Atomic # 8 Polarization: -2.37 SS G_CDS: -0.37 Total: -2.74 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.19 Total: -6.91 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -11.50 -9.95 -21.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6580494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.831 kcal (2) G-P(sol) polarization free energy of solvation -11.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds