Wall clock time and date at job start Sun Mar 7 2021 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47045 * 2 1 4 4 C 1.50695 * 109.47293 * 120.00291 * 2 1 3 5 5 C 1.35453 * 125.56434 * 244.97827 * 4 2 1 6 6 C 1.39828 * 107.86576 * 180.02562 * 5 4 2 7 7 C 1.37870 * 107.08722 * 359.75451 * 6 5 4 8 8 C 1.46684 * 126.23813 * 180.23386 * 7 6 5 9 9 O 1.21690 * 119.99554 * 0.18180 * 8 7 6 10 10 N 1.34767 * 120.00098 * 180.17546 * 8 7 6 11 11 C 1.46504 * 120.00027 * 179.97438 * 10 8 7 12 12 H 1.09000 * 112.84766 * 336.20264 * 11 10 8 13 13 C 1.53782 * 113.61361 * 107.50519 * 11 10 8 14 14 C 1.53778 * 87.08083 * 89.11931 * 13 11 10 15 15 H 1.09004 * 113.69255 * 270.87416 * 14 13 11 16 16 C 1.50700 * 113.61433 * 139.98307 * 14 13 11 17 17 N 1.30495 * 125.65018 * 167.19469 * 16 14 13 18 18 C 1.34123 * 109.26064 * 179.89165 * 17 16 14 19 19 C 1.34673 * 108.01516 * 0.37358 * 18 17 16 20 20 N 1.35035 * 125.64926 * 347.50157 * 16 14 13 21 21 C 1.53777 * 113.61796 * 205.00462 * 11 10 8 22 22 N 1.35537 * 125.56451 * 64.99901 * 4 2 1 23 23 H 0.96703 * 113.99967 * 59.99866 * 1 2 3 24 24 H 1.09008 * 109.46794 * 240.00092 * 2 1 3 25 25 H 1.48500 * 110.00017 * 59.99931 * 3 2 1 26 26 H 1.48500 * 109.99949 * 181.32029 * 3 2 1 27 27 H 1.08003 * 126.06719 * 359.97438 * 5 4 2 28 28 H 1.08007 * 126.45721 * 180.02562 * 6 5 4 29 29 H 0.97005 * 120.00219 * 0.02562 * 10 8 7 30 30 H 1.08997 * 113.61555 * 203.66891 * 13 11 10 31 31 H 1.09001 * 113.61393 * 334.56735 * 13 11 10 32 32 H 1.07996 * 125.99843 * 180.11600 * 18 17 16 33 33 H 1.08003 * 126.58840 * 179.81602 * 19 18 17 34 34 H 0.97004 * 126.40039 * 359.93860 * 20 16 14 35 35 H 1.09002 * 113.61227 * 25.42801 * 21 11 10 36 36 H 1.09001 * 113.61648 * 156.25479 * 21 11 10 37 37 H 0.97001 * 125.67560 * 359.95296 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6334 -0.1395 2.2383 6 6 2.9085 -1.1312 3.1849 7 6 2.3493 -2.3021 2.7191 8 6 2.3845 -3.6065 3.3892 9 8 2.9447 -3.7238 4.4631 10 7 1.7963 -4.6748 2.8157 11 6 1.8319 -5.9777 3.4848 12 1 2.6649 -6.0731 4.1813 13 6 0.4784 -6.4026 4.0782 14 6 0.1739 -7.0503 2.7171 15 1 -0.3061 -6.3754 2.0084 16 6 -0.5263 -8.3804 2.8246 17 7 -1.1012 -9.0189 1.8424 18 6 -1.6180 -10.1674 2.3037 19 6 -1.3604 -10.2396 3.6236 20 7 -0.6679 -9.1062 3.9545 21 6 1.6947 -7.1687 2.5218 22 7 1.7549 -2.0251 1.5089 23 1 -0.3933 0.4417 -0.7651 24 1 1.7923 -0.5139 -0.8901 25 1 1.5615 2.4679 1.2085 26 1 3.5346 1.7703 -0.0322 27 1 2.9290 0.8975 2.2995 28 1 3.4523 -1.0030 4.1092 29 1 1.3500 -4.5813 1.9595 30 1 0.5653 -7.1205 4.8937 31 1 -0.1754 -5.5643 4.3189 32 1 -2.1511 -10.9032 1.7200 33 1 -1.6450 -11.0385 4.2923 34 1 -0.3398 -8.8690 4.8360 35 1 2.0228 -6.9488 1.5058 36 1 2.1154 -8.0958 2.9112 37 1 1.2843 -2.6635 0.9503 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16970406_6580494.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:22:13 Heat of formation + Delta-G solvation = 66.452656 kcal Electronic energy + Delta-G solvation = -22023.587297 eV Core-core repulsion = 18577.084074 eV Total energy + Delta-G solvation = -3446.503222 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 289.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.14615 -42.65009 -41.00155 -39.22288 -37.62502 -34.80461 -33.47738 -32.34226 -31.64226 -30.54956 -27.30698 -26.89499 -25.97076 -23.59891 -22.57252 -21.89132 -21.72126 -21.31147 -20.53460 -19.76635 -18.97655 -18.45968 -17.29085 -16.91122 -16.52014 -16.19868 -15.88193 -15.67035 -15.51960 -15.26371 -15.10470 -14.82025 -14.58964 -14.55963 -14.36913 -13.86631 -13.65857 -13.54704 -13.49247 -12.72001 -12.57218 -12.03849 -11.97774 -11.60124 -11.46376 -11.08056 -11.04655 -10.45286 -10.38258 -10.25128 -9.41477 -9.38047 -4.92431 0.15605 1.06122 1.19890 1.35204 1.75696 1.77992 2.00207 2.07995 2.10373 2.13024 2.18994 3.21370 3.30489 3.32055 3.50347 3.65995 3.71871 3.82954 4.00718 4.03470 4.14849 4.20734 4.39794 4.47316 4.50492 4.54767 4.60111 4.69309 4.78170 4.80166 4.87672 4.88807 4.94368 5.10740 5.34085 5.44203 5.59387 5.76175 6.15751 6.34178 6.44994 6.85311 6.91521 7.09706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.063 4.063 3 Si 0.810 3.190 4 C 0.069 3.931 5 C -0.230 4.230 6 C -0.117 4.117 7 C -0.060 4.060 8 C 0.597 3.403 9 O -0.564 6.564 10 N -0.698 5.698 11 C 0.122 3.878 12 H 0.101 0.899 13 C -0.141 4.141 14 C -0.023 4.023 15 H 0.120 0.880 16 C 0.209 3.791 17 N -0.530 5.530 18 C -0.063 4.063 19 C -0.044 4.044 20 N -0.558 5.558 21 C -0.120 4.120 22 N -0.506 5.506 23 H 0.410 0.590 24 H 0.107 0.893 25 H -0.300 1.300 26 H -0.290 1.290 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.411 0.589 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.178 0.822 33 H 0.209 0.791 34 H 0.431 0.569 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 0.208 -4.695 5.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.172 4.172 3 Si 0.715 3.285 4 C -0.050 4.050 5 C -0.254 4.254 6 C -0.144 4.144 7 C -0.173 4.173 8 C 0.385 3.615 9 O -0.442 6.442 10 N -0.349 5.349 11 C 0.016 3.984 12 H 0.119 0.881 13 C -0.180 4.180 14 C -0.043 4.043 15 H 0.138 0.862 16 C -0.056 4.056 17 N -0.250 5.250 18 C -0.210 4.210 19 C -0.178 4.178 20 N -0.163 5.163 21 C -0.159 4.159 22 N -0.104 5.104 23 H 0.262 0.738 24 H 0.125 0.875 25 H -0.227 1.227 26 H -0.218 1.218 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.247 0.753 30 H 0.122 0.878 31 H 0.097 0.903 32 H 0.195 0.805 33 H 0.226 0.774 34 H 0.272 0.728 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.256 0.440 -3.901 4.122 hybrid contribution -0.226 -1.093 1.035 1.522 sum -1.483 -0.653 -2.866 3.292 Atomic orbital electron populations 1.86432 1.16664 1.82584 1.51930 1.24641 0.86303 1.11467 0.94821 0.94199 0.77022 0.73125 0.84155 1.20464 1.02256 0.83982 0.98336 1.20741 1.08488 0.99930 0.96271 1.21425 1.01567 0.90974 1.00421 1.20288 1.10579 0.95534 0.90934 1.17042 0.77773 0.82593 0.84050 1.90848 1.46028 1.84810 1.22526 1.45400 1.56831 1.08059 1.24626 1.21820 0.98919 0.81708 0.95915 0.88110 1.23508 0.97099 1.01110 0.96309 1.21114 0.94680 0.88792 0.99675 0.86166 1.23218 1.02705 0.97384 0.82267 1.70166 1.15164 1.08047 1.31651 1.22753 1.06600 0.97544 0.94084 1.23298 1.02789 0.93255 0.98499 1.43280 1.43612 1.17416 1.11945 1.23336 0.93523 0.97914 1.01122 1.41874 1.42338 1.09426 1.16748 0.73766 0.87532 1.22747 1.21759 0.83958 0.83427 0.75279 0.87819 0.90256 0.80482 0.77448 0.72788 0.89041 0.87951 0.72742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 2.75 12.86 -148.98 -1.92 0.83 16 2 C -0.06 0.30 3.07 71.23 0.22 0.52 16 3 Si 0.81 -3.91 30.56 68.60 2.10 -1.82 16 4 C 0.07 0.16 6.50 41.34 0.27 0.43 16 5 C -0.23 -1.47 9.32 22.01 0.21 -1.26 16 6 C -0.12 -0.97 10.65 22.57 0.24 -0.73 16 7 C -0.06 -0.33 7.06 40.35 0.28 -0.04 16 8 C 0.60 3.67 7.79 86.45 0.67 4.34 16 9 O -0.56 -7.97 16.48 -4.32 -0.07 -8.04 16 10 N -0.70 1.24 5.26 -444.01 -2.33 -1.09 16 11 C 0.12 -0.32 4.32 45.52 0.20 -0.12 16 12 H 0.10 0.07 7.46 -2.39 -0.02 0.06 16 13 C -0.14 0.64 7.35 31.12 0.23 0.87 16 14 C -0.02 0.07 4.17 -11.01 -0.05 0.03 16 15 H 0.12 -0.46 8.14 -2.38 -0.02 -0.48 16 16 C 0.21 0.45 7.36 138.13 1.02 1.47 16 17 N -0.53 -4.40 11.25 -188.14 -2.12 -6.52 16 18 C -0.06 -0.29 11.87 83.53 0.99 0.70 16 19 C -0.04 0.04 12.04 83.09 1.00 1.04 16 20 N -0.56 1.20 5.94 -186.27 -1.11 0.09 16 21 C -0.12 0.57 7.37 31.12 0.23 0.80 16 22 N -0.51 -0.05 5.99 -171.93 -1.03 -1.08 16 23 H 0.41 -6.30 8.74 -74.06 -0.65 -6.95 16 24 H 0.11 -1.09 7.96 -2.38 -0.02 -1.11 16 25 H -0.30 -1.14 7.11 99.48 0.71 -0.43 16 26 H -0.29 -0.42 7.11 99.48 0.71 0.28 16 27 H 0.14 0.76 6.19 -2.91 -0.02 0.75 16 28 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 29 H 0.41 -3.01 7.83 -92.70 -0.73 -3.74 16 30 H 0.10 -0.78 6.64 -2.39 -0.02 -0.80 16 31 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 33 H 0.21 -1.69 8.06 -2.91 -0.02 -1.71 16 34 H 0.43 -3.48 7.53 -92.70 -0.70 -4.18 16 35 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 36 H 0.10 -0.49 8.10 -2.39 -0.02 -0.51 16 37 H 0.43 -2.82 8.19 -92.71 -0.76 -3.58 16 Total: 0.00 -28.76 318.66 -2.61 -31.36 By element: Atomic # 1 Polarization: -20.14 SS G_CDS: -1.64 Total: -21.78 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 5.51 Total: 8.04 kcal Atomic # 7 Polarization: -2.01 SS G_CDS: -6.59 Total: -8.60 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -1.99 Total: -7.20 kcal Atomic # 14 Polarization: -3.91 SS G_CDS: 2.10 Total: -1.82 kcal Total: -28.76 -2.61 -31.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6580494.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.814 kcal (2) G-P(sol) polarization free energy of solvation -28.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds