Wall clock time and date at job start Sun Mar 7 2021 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33816 * 122.45146 * 2 1 4 4 C 1.50702 * 124.51796 * 0.02562 * 3 2 1 5 5 O 1.42894 * 109.47506 * 29.99549 * 4 3 2 6 6 Si 1.86302 * 109.46839 * 149.99855 * 4 3 2 7 7 S 1.70612 * 110.95494 * 179.78082 * 3 2 1 8 8 C 1.75833 * 91.56293 * 0.30501 * 7 3 2 9 9 C 1.46590 * 125.45606 * 179.97438 * 8 7 3 10 10 O 1.21699 * 119.99828 * 179.69343 * 9 8 7 11 11 N 1.34777 * 120.00032 * 359.69623 * 9 8 7 12 12 C 1.46499 * 120.00010 * 179.97438 * 11 9 8 13 13 H 1.09007 * 112.84814 * 23.80913 * 12 11 9 14 14 C 1.53776 * 113.61195 * 155.00075 * 12 11 9 15 15 C 1.53782 * 87.08320 * 89.20480 * 14 12 11 16 16 H 1.09003 * 113.61214 * 270.80117 * 15 14 12 17 17 C 1.50692 * 113.61668 * 139.97726 * 15 14 12 18 18 N 1.30501 * 125.64779 * 95.02651 * 17 15 14 19 19 C 1.34134 * 109.25535 * 179.97438 * 18 17 15 20 20 C 1.34668 * 108.01972 * 0.02562 * 19 18 17 21 21 N 1.35044 * 125.65329 * 275.02635 * 17 15 14 22 22 C 1.53779 * 113.69381 * 252.53736 * 12 11 9 23 23 C 1.36643 * 109.08224 * 359.70004 * 8 7 3 24 24 H 1.08994 * 109.47482 * 270.00181 * 1 2 3 25 25 H 1.08994 * 109.46745 * 30.00541 * 1 2 3 26 26 H 1.09001 * 109.46673 * 149.99859 * 1 2 3 27 27 H 1.09004 * 109.46734 * 269.99622 * 4 3 2 28 28 H 0.96702 * 113.99864 * 60.00465 * 5 4 3 29 29 H 1.48500 * 110.00103 * 58.68184 * 6 4 3 30 30 H 1.48501 * 109.99753 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99834 * 0.02562 * 11 9 8 32 32 H 1.09001 * 113.62082 * 334.65135 * 14 12 11 33 33 H 1.09004 * 113.61252 * 203.75058 * 14 12 11 34 34 H 1.08001 * 125.98356 * 179.97438 * 19 18 17 35 35 H 1.08003 * 126.59021 * 180.02562 * 20 19 18 36 36 H 0.96995 * 126.39482 * 359.97438 * 21 17 15 37 37 H 1.08993 * 113.61319 * 156.32080 * 22 12 11 38 38 H 1.09001 * 113.60870 * 25.42004 * 22 12 11 39 39 H 1.08005 * 123.34653 * 180.24799 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4979 0.6745 6 14 2.7928 3.6824 0.8787 7 16 3.8970 0.7892 0.0061 8 6 3.5937 -0.9428 -0.0007 9 6 4.6231 -1.9864 -0.0001 10 8 4.3002 -3.1597 0.0005 11 7 5.9273 -1.6464 -0.0002 12 6 6.9562 -2.6893 0.0010 13 1 6.5992 -3.6364 -0.4037 14 6 8.2979 -2.2315 -0.5947 15 6 8.6832 -1.7784 0.8235 16 1 8.3916 -0.7525 1.0484 17 6 10.1173 -2.0712 1.1821 18 7 11.1152 -1.2381 1.0675 19 6 12.2418 -1.8380 1.4798 20 6 11.9303 -3.0906 1.8638 21 7 10.5827 -3.2390 1.6752 22 6 7.6907 -2.8312 1.3445 23 6 2.2446 -1.1601 -0.0004 24 1 -0.3634 0.0000 1.0276 25 1 -0.3632 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.4930 2.8507 -1.0270 28 1 0.4267 2.2093 1.5961 29 1 4.1168 3.6864 0.2061 30 1 2.2231 5.0538 0.8855 31 1 6.1847 -0.7112 -0.0002 32 1 8.2030 -1.4101 -1.3048 33 1 8.9099 -3.0505 -0.9727 34 1 13.2264 -1.3944 1.4993 35 1 12.6125 -3.8348 2.2476 36 1 10.0596 -4.0343 1.8615 37 1 8.1366 -3.8141 1.4966 38 1 7.1053 -2.4939 2.1999 39 1 1.8019 -2.1452 -0.0001 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16970406_6739946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:22:20 Heat of formation + Delta-G solvation = 53.747650 kcal Electronic energy + Delta-G solvation = -23625.774178 eV Core-core repulsion = 20049.534423 eV Total energy + Delta-G solvation = -3576.239755 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.11287 -41.29588 -40.15403 -39.15828 -37.35507 -34.61790 -33.41745 -32.16660 -30.58611 -30.27751 -27.16575 -27.00014 -25.77918 -24.47553 -22.63120 -21.98335 -21.77581 -20.66753 -20.10146 -19.58968 -18.95631 -17.77280 -17.32507 -17.09225 -16.52252 -16.34855 -16.07996 -15.88079 -15.63111 -15.42448 -15.12130 -14.67507 -14.62569 -14.53552 -14.43836 -14.00951 -13.77291 -13.57762 -13.52369 -13.12373 -12.99886 -12.63646 -12.47523 -12.27972 -12.01837 -11.80670 -11.66136 -11.14916 -10.97205 -10.96510 -10.76243 -10.29931 -9.72031 -9.48500 -9.34702 -5.21492 -0.66597 0.24238 0.66428 1.04203 1.06997 1.28995 1.43573 1.80546 1.85756 2.08846 2.13434 2.18597 3.14548 3.20303 3.25658 3.43560 3.51115 3.61055 3.68847 3.92424 4.06756 4.10726 4.21449 4.38546 4.38771 4.42531 4.47430 4.54530 4.57236 4.64378 4.71084 4.77424 4.80354 4.85509 4.90073 5.00552 5.13698 5.34720 5.35972 5.42802 5.80067 6.26170 6.34365 6.36357 7.01972 7.14944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.092 4.092 3 C -0.235 4.235 4 C -0.027 4.027 5 O -0.529 6.529 6 Si 0.658 3.342 7 S 0.196 5.804 8 C -0.265 4.265 9 C 0.597 3.403 10 O -0.522 6.522 11 N -0.711 5.711 12 C 0.125 3.875 13 H 0.113 0.887 14 C -0.133 4.133 15 C -0.026 4.026 16 H 0.119 0.881 17 C 0.217 3.783 18 N -0.487 5.487 19 C -0.027 4.027 20 C -0.055 4.055 21 N -0.565 5.565 22 C -0.149 4.149 23 C -0.044 4.044 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.125 0.875 28 H 0.381 0.619 29 H -0.236 1.236 30 H -0.234 1.234 31 H 0.401 0.599 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.178 0.822 36 H 0.418 0.582 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -0.236 2.766 2.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.354 4.354 4 C -0.140 4.140 5 O -0.335 6.335 6 Si 0.557 3.443 7 S 0.464 5.536 8 C -0.385 4.385 9 C 0.384 3.616 10 O -0.399 6.399 11 N -0.362 5.362 12 C 0.020 3.980 13 H 0.131 0.869 14 C -0.172 4.172 15 C -0.046 4.046 16 H 0.137 0.863 17 C -0.047 4.047 18 N -0.206 5.206 19 C -0.175 4.175 20 C -0.189 4.189 21 N -0.169 5.169 22 C -0.189 4.189 23 C -0.077 4.077 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.229 0.771 29 H -0.160 1.160 30 H -0.157 1.157 31 H 0.236 0.764 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.195 0.805 36 H 0.256 0.744 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.760 1.605 1.835 3.007 hybrid contribution -1.232 -1.974 -0.043 2.327 sum 0.528 -0.369 1.792 1.905 Atomic orbital electron populations 1.20645 0.88486 1.03402 1.02894 1.18724 0.98493 0.90461 1.02749 1.24488 0.98389 1.00988 1.11554 1.24471 0.92254 0.95269 1.02049 1.86534 1.27677 1.90036 1.29251 0.94827 0.78244 0.80833 0.90384 1.83069 1.03299 0.98182 1.69029 1.24516 0.97920 0.97040 1.19026 1.16926 0.81439 0.87460 0.75773 1.90861 1.81515 1.18180 1.49383 1.45513 1.05013 1.09768 1.75919 1.21789 0.87061 0.92734 0.96453 0.86892 1.23413 0.95066 1.02635 0.96056 1.21080 0.85340 1.01131 0.97057 0.86283 1.22904 0.96584 0.82963 1.02207 1.70246 0.98329 1.31131 1.20897 1.22421 0.98063 0.92390 1.04642 1.22828 0.84571 1.01228 1.10278 1.43264 1.08807 1.14610 1.50204 1.23523 0.97339 0.99033 0.98958 1.20744 0.90874 1.00186 0.95907 0.90885 0.89671 0.91911 0.85840 0.77092 1.16032 1.15695 0.76438 0.89537 0.88246 0.81165 0.80454 0.74378 0.89299 0.89618 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.11 8.67 36.01 0.31 0.42 16 2 C -0.09 0.01 5.75 -106.45 -0.61 -0.60 16 3 C -0.23 0.18 5.54 -35.86 -0.20 -0.01 16 4 C -0.03 0.04 2.76 36.01 0.10 0.14 16 5 O -0.53 0.89 9.85 -35.23 -0.35 0.55 16 6 Si 0.66 -1.40 31.31 -169.99 -5.32 -6.73 16 7 S 0.20 -0.22 19.78 -107.50 -2.13 -2.35 16 8 C -0.27 -0.23 6.45 -36.79 -0.24 -0.47 16 9 C 0.60 1.18 7.78 -12.89 -0.10 1.08 16 10 O -0.52 -2.84 16.44 5.19 0.09 -2.76 16 11 N -0.71 0.58 5.26 -54.35 -0.29 0.29 16 12 C 0.13 -0.18 4.32 -67.12 -0.29 -0.47 16 13 H 0.11 -0.02 7.46 -51.93 -0.39 -0.41 16 14 C -0.13 0.28 7.38 -25.92 -0.19 0.09 16 15 C -0.03 0.04 4.17 -90.96 -0.38 -0.34 16 16 H 0.12 -0.21 8.14 -51.93 -0.42 -0.63 16 17 C 0.22 0.23 7.36 -155.42 -1.14 -0.92 16 18 N -0.49 -1.87 11.25 -10.82 -0.12 -1.99 16 19 C -0.03 -0.06 11.87 -17.81 -0.21 -0.27 16 20 C -0.06 0.01 12.04 -16.56 -0.20 -0.19 16 21 N -0.57 0.48 5.94 -10.23 -0.06 0.42 16 22 C -0.15 0.36 7.36 -25.92 -0.19 0.17 16 23 C -0.04 -0.04 9.80 -40.44 -0.40 -0.44 16 24 H 0.07 -0.16 8.14 -51.93 -0.42 -0.58 16 25 H 0.08 -0.03 6.42 -51.93 -0.33 -0.36 16 26 H 0.06 -0.07 8.13 -51.93 -0.42 -0.49 16 27 H 0.12 -0.16 7.96 -51.93 -0.41 -0.57 16 28 H 0.38 -1.91 8.66 45.56 0.39 -1.52 16 29 H -0.24 0.11 7.09 56.52 0.40 0.51 16 30 H -0.23 -0.18 7.11 56.52 0.40 0.22 16 31 H 0.40 -1.05 7.82 -40.82 -0.32 -1.37 16 32 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 33 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 34 H 0.17 0.02 8.06 -52.49 -0.42 -0.40 16 35 H 0.18 -0.58 8.06 -52.48 -0.42 -1.00 16 36 H 0.42 -1.52 7.53 -40.82 -0.31 -1.83 16 37 H 0.09 -0.33 6.64 -51.93 -0.34 -0.67 16 38 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.16 0.13 8.06 -52.48 -0.42 -0.29 16 LS Contribution 340.73 15.07 5.13 5.13 Total: 0.00 -8.96 340.73 -11.49 -20.46 By element: Atomic # 1 Polarization: -6.52 SS G_CDS: -4.71 Total: -11.23 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.74 Total: -1.80 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.47 Total: -1.27 kcal Atomic # 8 Polarization: -1.95 SS G_CDS: -0.26 Total: -2.21 kcal Atomic # 14 Polarization: -1.40 SS G_CDS: -5.32 Total: -6.73 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.13 Total: -2.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -8.96 -11.49 -20.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6739946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.203 kcal (2) G-P(sol) polarization free energy of solvation -8.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds