Wall clock time and date at job start Sun Mar 7 2021 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86295 * 109.46916 * 2 1 4 4 C 1.50700 * 109.47014 * 240.00041 * 2 1 3 5 5 C 1.32771 * 124.71164 * 299.99749 * 4 2 1 6 6 C 1.44430 * 113.08130 * 180.02562 * 5 4 2 7 7 C 1.47190 * 123.45637 * 180.02562 * 6 5 4 8 8 O 1.21640 * 120.00350 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99804 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.85221 * 334.67013 * 10 9 7 12 12 C 1.53785 * 113.68813 * 105.94035 * 10 9 7 13 13 C 1.53777 * 87.08241 * 89.12417 * 12 10 9 14 14 H 1.08994 * 113.61814 * 270.88533 * 13 12 10 15 15 C 1.50702 * 113.69032 * 139.98725 * 13 12 10 16 16 N 1.30498 * 125.64994 * 167.48734 * 15 13 12 17 17 C 1.34126 * 109.25793 * 180.02562 * 16 15 13 18 18 C 1.34677 * 108.01739 * 0.02562 * 17 16 15 19 19 N 1.35039 * 125.64975 * 347.18823 * 15 13 12 20 20 C 1.53781 * 113.61339 * 203.47543 * 10 9 7 21 21 C 1.36008 * 113.07892 * 0.26565 * 6 5 4 22 22 S 1.70448 * 110.81558 * 359.59242 * 21 6 5 23 23 H 0.96691 * 114.00069 * 299.99930 * 1 2 3 24 24 H 1.09002 * 109.47121 * 119.99701 * 2 1 3 25 25 H 1.48505 * 110.00074 * 178.68256 * 3 2 1 26 26 H 1.48498 * 110.00075 * 299.99862 * 3 2 1 27 27 H 1.08000 * 123.46039 * 359.97438 * 5 4 2 28 28 H 0.96998 * 119.99866 * 0.02562 * 9 7 6 29 29 H 1.08999 * 113.61060 * 203.67840 * 12 10 9 30 30 H 1.08997 * 113.61198 * 334.57634 * 12 10 9 31 31 H 1.07996 * 125.99365 * 180.02562 * 17 16 15 32 32 H 1.07999 * 126.58914 * 180.02562 * 18 17 16 33 33 H 0.97005 * 126.39710 * 0.02562 * 19 15 13 34 34 H 1.09000 * 113.61578 * 25.34726 * 20 10 9 35 35 H 1.09001 * 113.61682 * 156.17306 * 20 10 9 36 36 H 1.07992 * 124.58889 * 179.71676 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6689 -1.9763 -1.5327 6 6 2.2781 -2.4007 -2.7715 7 6 2.1354 -3.7580 -3.3228 8 8 1.4766 -4.5899 -2.7281 9 7 2.7346 -4.0791 -4.4866 10 6 2.5929 -5.4302 -5.0351 11 1 2.3862 -6.1782 -4.2697 12 6 1.6477 -5.5097 -6.2455 13 6 2.8767 -5.2242 -7.1246 14 1 3.0589 -4.1622 -7.2889 15 6 2.9092 -6.0276 -8.3992 16 7 3.7035 -5.8146 -9.4125 17 6 3.4532 -6.7209 -10.3689 18 6 2.4659 -7.5259 -9.9319 19 7 2.1252 -7.0907 -8.6797 20 6 3.7273 -5.8276 -5.9943 21 6 3.0015 -1.4189 -3.3737 22 16 2.9450 0.0205 -2.4626 23 1 -0.3933 0.4416 0.7650 24 1 1.7924 -0.5138 0.8900 25 1 3.5346 1.7703 0.0321 26 1 1.5614 2.4678 -1.2085 27 1 1.0628 -2.6226 -0.9152 28 1 3.2602 -3.4158 -4.9607 29 1 1.2200 -6.5001 -6.4011 30 1 0.9005 -4.7164 -6.2688 31 1 3.9554 -6.7927 -11.3224 32 1 2.0308 -8.3585 -10.4647 33 1 1.4448 -7.4722 -8.1030 34 1 4.6590 -5.2910 -5.8149 35 1 3.8691 -6.9049 -6.0803 36 1 3.5374 -1.5351 -4.3041 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16970406_6894386.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:22:22 Heat of formation + Delta-G solvation = 59.413219 kcal Electronic energy + Delta-G solvation = -21608.921823 eV Core-core repulsion = 18188.465365 eV Total energy + Delta-G solvation = -3420.456458 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 306.082 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.10900 -41.33610 -39.64917 -38.51781 -37.14192 -34.60890 -33.41484 -31.95522 -30.51446 -27.02307 -26.99131 -26.76352 -25.21561 -22.64743 -22.04691 -21.76680 -20.59354 -20.53973 -19.09009 -18.71247 -18.41155 -18.08575 -17.04101 -16.35068 -16.27614 -15.98882 -15.76028 -15.51158 -15.45280 -14.94452 -14.57936 -14.49687 -14.33190 -14.02093 -13.88740 -13.73355 -13.66707 -13.42447 -12.70072 -12.60100 -12.29472 -12.11095 -11.99662 -11.63927 -10.97932 -10.96842 -10.96373 -10.54866 -10.23235 -9.97463 -9.54561 -9.34343 -5.32819 -0.40388 0.32839 0.68522 0.86435 1.07355 1.11866 1.49585 1.80714 1.93747 2.12647 2.18282 2.30246 3.16367 3.23666 3.27075 3.47125 3.59003 3.64378 3.78653 3.93274 3.94231 4.11266 4.22453 4.31705 4.40219 4.44734 4.47897 4.58813 4.67035 4.68715 4.74430 4.82872 4.91448 5.01974 5.14160 5.19260 5.41480 5.80295 6.36014 6.36679 6.49661 7.13793 7.15072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.034 4.034 3 Si 0.670 3.330 4 C -0.199 4.199 5 C -0.048 4.048 6 C -0.156 4.156 7 C 0.584 3.416 8 O -0.528 6.528 9 N -0.710 5.710 10 C 0.126 3.874 11 H 0.111 0.889 12 C -0.149 4.149 13 C -0.025 4.025 14 H 0.118 0.882 15 C 0.217 3.783 16 N -0.487 5.487 17 C -0.027 4.027 18 C -0.055 4.055 19 N -0.565 5.565 20 C -0.132 4.132 21 C -0.202 4.202 22 S 0.178 5.822 23 H 0.385 0.615 24 H 0.085 0.915 25 H -0.237 1.237 26 H -0.234 1.234 27 H 0.159 0.841 28 H 0.401 0.599 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.178 0.822 33 H 0.418 0.582 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 1.879 2.392 3.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.147 4.147 3 Si 0.569 3.431 4 C -0.315 4.315 5 C -0.077 4.077 6 C -0.174 4.174 7 C 0.370 3.630 8 O -0.404 6.404 9 N -0.362 5.362 10 C 0.020 3.980 11 H 0.129 0.871 12 C -0.189 4.189 13 C -0.045 4.045 14 H 0.136 0.864 15 C -0.047 4.047 16 N -0.207 5.207 17 C -0.175 4.175 18 C -0.189 4.189 19 N -0.169 5.169 20 C -0.171 4.171 21 C -0.340 4.340 22 S 0.444 5.556 23 H 0.233 0.767 24 H 0.103 0.897 25 H -0.161 1.161 26 H -0.158 1.158 27 H 0.176 0.824 28 H 0.237 0.763 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.188 0.812 32 H 0.196 0.804 33 H 0.256 0.744 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.265 3.629 1.535 4.139 hybrid contribution -1.242 -2.602 -0.268 2.896 sum 0.023 1.027 1.267 1.631 Atomic orbital electron populations 1.86517 1.16737 1.81851 1.49816 1.23991 0.85958 1.09633 0.95154 0.94692 0.81941 0.78168 0.88289 1.23437 1.08259 0.97824 1.01947 1.21023 0.97723 0.94354 0.94634 1.20189 1.04540 0.94625 0.98061 1.17568 0.78761 0.86526 0.80123 1.90826 1.39768 1.50215 1.59627 1.45494 1.53655 1.13398 1.23608 1.21766 0.96114 0.84913 0.95200 0.87074 1.23522 0.96972 1.03073 0.95327 1.21070 0.97787 0.99131 0.86558 0.86385 1.22915 0.92970 0.91031 0.97751 1.70237 1.23981 1.25651 1.00798 1.22420 0.99699 0.95214 1.00201 1.22832 1.03751 1.04801 0.87528 1.43266 1.31916 1.26019 1.15666 1.23400 0.97963 1.02573 0.93136 1.25819 1.04386 0.98700 1.05077 1.83207 1.47042 1.12057 1.13280 0.76658 0.89708 1.16111 1.15754 0.82380 0.76343 0.89378 0.89723 0.81156 0.80441 0.74363 0.89600 0.88314 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.09 12.82 -35.23 -0.45 -0.36 16 2 C -0.03 0.02 2.94 36.01 0.11 0.13 16 3 Si 0.67 -1.24 30.91 -169.99 -5.25 -6.49 16 4 C -0.20 -0.35 5.72 -36.18 -0.21 -0.55 16 5 C -0.05 -0.14 9.91 -39.02 -0.39 -0.52 16 6 C -0.16 -0.31 5.98 -104.63 -0.63 -0.94 16 7 C 0.58 1.61 7.79 -12.62 -0.10 1.51 16 8 O -0.53 -3.38 16.42 5.24 0.09 -3.29 16 9 N -0.71 0.40 5.24 -54.16 -0.28 0.12 16 10 C 0.13 -0.12 4.30 -67.12 -0.29 -0.41 16 11 H 0.11 0.04 7.50 -51.93 -0.39 -0.35 16 12 C -0.15 0.26 7.36 -25.92 -0.19 0.07 16 13 C -0.03 0.03 4.18 -90.95 -0.38 -0.35 16 14 H 0.12 -0.16 8.14 -51.93 -0.42 -0.58 16 15 C 0.22 0.32 7.36 -155.42 -1.14 -0.82 16 16 N -0.49 -2.04 11.25 -10.82 -0.12 -2.17 16 17 C -0.03 -0.07 11.87 -17.81 -0.21 -0.28 16 18 C -0.06 -0.01 12.04 -16.56 -0.20 -0.21 16 19 N -0.56 0.23 5.94 -10.23 -0.06 0.17 16 20 C -0.13 0.24 7.37 -25.91 -0.19 0.05 16 21 C -0.20 0.04 10.38 29.93 0.31 0.35 16 22 S 0.18 0.12 20.18 -107.50 -2.17 -2.05 16 23 H 0.39 -2.06 8.74 45.56 0.40 -1.67 16 24 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 25 H -0.24 -0.02 7.11 56.52 0.40 0.38 16 26 H -0.23 -0.24 7.11 56.52 0.40 0.16 16 27 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 28 H 0.40 -1.20 7.20 -40.82 -0.29 -1.49 16 29 H 0.09 -0.26 6.65 -51.93 -0.35 -0.61 16 30 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 31 H 0.17 0.07 8.06 -52.49 -0.42 -0.35 16 32 H 0.18 -0.52 8.06 -52.49 -0.42 -0.94 16 33 H 0.42 -1.32 7.54 -40.82 -0.31 -1.63 16 34 H 0.09 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.10 -0.18 8.10 -51.93 -0.42 -0.60 16 36 H 0.17 -0.59 7.01 -52.49 -0.37 -0.96 16 LS Contribution 323.46 15.07 4.87 4.87 Total: 0.00 -10.70 323.46 -10.76 -21.46 By element: Atomic # 1 Polarization: -6.40 SS G_CDS: -3.87 Total: -10.27 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -3.51 Total: -1.98 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -0.47 Total: -1.88 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.37 Total: -3.66 kcal Atomic # 14 Polarization: -1.24 SS G_CDS: -5.25 Total: -6.49 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.17 Total: -2.05 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -10.70 -10.76 -21.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16970406_6894386.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.874 kcal (2) G-P(sol) polarization free energy of solvation -10.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds