Wall clock time and date at job start Sun Mar 7 2021 09:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 Si 1.86306 * 109.46757 * 2 1 4 4 C 1.86293 * 109.90721 * 298.65851 * 3 2 1 5 5 C 1.53003 * 109.47391 * 298.39315 * 4 3 2 6 6 C 1.87344 * 109.92131 * 59.76971 * 3 2 1 7 7 C 1.53818 * 107.31175 * 166.18630 * 6 3 2 8 8 N 1.46309 * 109.23007 * 306.11075 * 7 6 3 9 9 C 1.34775 * 119.08586 * 252.35345 * 8 7 6 10 10 O 1.21279 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99979 * 179.97438 * 9 8 7 12 12 O 1.42896 * 109.47034 * 180.02562 * 11 9 8 13 13 C 1.35924 * 116.99764 * 180.02562 * 12 11 9 14 14 C 1.38671 * 120.05726 * 359.97438 * 13 12 11 15 15 C 1.38194 * 119.95229 * 180.02562 * 14 13 12 16 16 C 1.38241 * 120.07195 * 359.97438 * 15 14 13 17 17 C 1.50692 * 119.94067 * 180.02562 * 16 15 14 18 18 O 1.42910 * 109.47336 * 299.99910 * 17 16 15 19 19 Si 1.86306 * 109.47117 * 180.02562 * 17 16 15 20 20 H 1.48491 * 109.47190 * 59.99539 * 19 17 16 21 21 H 1.48501 * 109.47006 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46695 * 299.99820 * 19 17 16 23 23 C 1.38293 * 120.11473 * 359.79009 * 16 15 14 24 24 C 1.38190 * 120.04388 * 0.46501 * 23 16 15 25 25 Br 1.89107 * 120.03243 * 179.79109 * 24 23 16 26 26 C 1.46295 * 121.82541 * 72.62863 * 8 7 6 27 27 C 1.54321 * 108.95795 * 287.40238 * 26 8 7 28 28 H 1.09000 * 109.46874 * 63.23314 * 1 2 3 29 29 H 1.08999 * 109.47141 * 183.23352 * 1 2 3 30 30 H 1.09003 * 109.47257 * 303.23127 * 1 2 3 31 31 H 1.08999 * 109.47330 * 240.00482 * 2 1 3 32 32 H 1.08993 * 109.47214 * 119.99801 * 2 1 3 33 33 H 1.08995 * 109.47490 * 58.39689 * 4 3 2 34 34 H 1.09001 * 109.47152 * 178.39684 * 4 3 2 35 35 H 1.09003 * 109.47227 * 298.44350 * 5 4 3 36 36 H 1.09002 * 109.47193 * 58.44210 * 5 4 3 37 37 H 1.09003 * 109.47320 * 178.44259 * 5 4 3 38 38 H 1.09003 * 109.88821 * 46.73710 * 6 3 2 39 39 H 1.09002 * 109.88866 * 285.63905 * 6 3 2 40 40 H 1.08999 * 109.51698 * 186.18186 * 7 6 3 41 41 H 1.09004 * 109.55490 * 66.05980 * 7 6 3 42 42 H 1.09003 * 109.46857 * 60.00440 * 11 9 8 43 43 H 1.08996 * 109.47563 * 300.00375 * 11 9 8 44 44 H 1.07997 * 120.02696 * 0.03988 * 14 13 12 45 45 H 1.07997 * 119.96534 * 179.97438 * 15 14 13 46 46 H 1.08996 * 109.47641 * 59.99863 * 17 16 15 47 47 H 0.96696 * 113.99639 * 300.00641 * 18 17 16 48 48 H 1.07999 * 119.97328 * 180.23231 * 23 16 15 49 49 H 1.09003 * 109.51329 * 47.29699 * 26 8 7 50 50 H 1.08999 * 109.51054 * 167.44370 * 26 8 7 51 51 H 1.08997 * 109.97539 * 294.51686 * 27 26 8 52 52 H 1.09000 * 109.81839 * 173.41079 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1509 1.7566 0.0000 4 6 1.5703 2.6346 -1.5370 5 6 2.1406 1.9331 -2.7714 6 6 1.5276 2.6539 1.5218 7 6 2.3384 3.9547 1.6503 8 7 3.7661 3.6353 1.6432 9 6 4.4665 3.7393 2.7900 10 8 3.9125 4.0939 3.8088 11 6 5.9380 3.4148 2.8062 12 8 6.4519 3.5992 4.1268 13 6 7.7743 3.3474 4.3150 14 6 8.5604 2.9313 3.2512 15 6 9.9046 2.6755 3.4451 16 6 10.4662 2.8345 4.6982 17 6 11.9324 2.5553 4.9063 18 8 12.2100 1.1936 4.5730 19 14 12.3756 2.8601 6.6900 20 1 11.5726 1.9636 7.5597 21 1 13.8206 2.5855 6.8948 22 1 12.0870 4.2749 7.0369 23 6 9.6859 3.2541 5.7602 24 6 8.3402 3.5061 5.5728 25 35 7.2723 4.0741 7.0264 26 6 4.4558 3.2120 0.4245 27 6 4.0228 1.7719 0.0779 28 1 -0.3633 0.4628 -0.9176 29 1 -0.3633 -1.0260 0.0580 30 1 -0.3634 0.5632 0.8596 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 0.4813 2.6137 -1.5780 34 1 1.9133 3.6690 -1.5161 35 1 3.2294 1.9783 -2.7444 36 1 1.8202 0.8913 -2.7778 37 1 1.7786 2.4301 -3.6715 38 1 1.6785 2.0341 2.4057 39 1 0.4688 2.8867 1.4074 40 1 2.0815 4.4531 2.5851 41 1 2.1083 4.6124 0.8121 42 1 6.4633 4.0752 2.1161 43 1 6.0852 2.3789 2.5008 44 1 8.1227 2.8075 2.2717 45 1 10.5169 2.3510 2.6168 46 1 12.5218 3.2131 4.2676 47 1 11.7190 0.5511 5.1031 48 1 10.1279 3.3811 6.7374 49 1 4.1914 3.8808 -0.3946 50 1 5.5333 3.2422 0.5867 51 1 4.3675 1.0835 0.8495 52 1 4.4365 1.4841 -0.8887 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17051536_6201210.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 09:19:52 Heat of formation + Delta-G solvation = -104.660248 kcal Electronic energy + Delta-G solvation = -31360.980216 eV Core-core repulsion = 27110.004841 eV Total energy + Delta-G solvation = -4250.975375 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 429.093 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79092 -40.89322 -39.19903 -37.42775 -37.14954 -33.70741 -33.55206 -32.98289 -32.57822 -32.08078 -30.86530 -30.27958 -29.00660 -26.36491 -24.50971 -24.41322 -23.49741 -23.34940 -23.13250 -22.36079 -20.27305 -19.66900 -18.50638 -17.96842 -17.57226 -17.54827 -16.72891 -16.55646 -16.24087 -15.97909 -15.71517 -15.53547 -15.36661 -15.16983 -15.04148 -14.92544 -14.49204 -14.33808 -14.32728 -14.18266 -14.05638 -13.83325 -13.73074 -13.44859 -13.38543 -13.10003 -12.79500 -12.72096 -12.41649 -12.32539 -12.29663 -12.24859 -12.15888 -12.14499 -12.00845 -11.89132 -11.69565 -11.68362 -11.24508 -10.97611 -10.43226 -10.41903 -10.28629 -10.26800 -10.01780 -9.74327 -9.32150 -0.04751 0.07119 0.60335 1.16802 1.37079 1.41826 1.42471 1.48618 1.77644 1.87882 1.89983 1.95369 2.34503 2.39689 2.61934 3.27114 3.48070 3.56544 3.74289 3.78134 3.97351 3.99874 4.06373 4.13429 4.16906 4.30400 4.33229 4.38635 4.41952 4.49942 4.50554 4.52536 4.60603 4.65757 4.68403 4.71359 4.74412 4.79016 4.85316 4.86700 5.03945 5.04985 5.17612 5.26039 5.27507 5.29767 5.34664 5.36989 5.44641 5.47474 5.52100 5.56104 5.67408 6.03248 6.24077 6.71018 7.02982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.426 4.426 3 Si 1.058 2.942 4 C -0.414 4.414 5 C -0.151 4.151 6 C -0.441 4.441 7 C 0.116 3.884 8 N -0.602 5.602 9 C 0.506 3.494 10 O -0.571 6.571 11 C 0.032 3.968 12 O -0.306 6.306 13 C 0.148 3.852 14 C -0.194 4.194 15 C -0.026 4.026 16 C -0.151 4.151 17 C -0.057 4.057 18 O -0.546 6.546 19 Si 0.951 3.049 20 H -0.257 1.257 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.068 4.068 24 C -0.142 4.142 25 Br -0.055 7.055 26 C 0.099 3.901 27 C -0.427 4.427 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.128 0.872 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.138 0.862 47 H 0.389 0.611 48 H 0.133 0.867 49 H 0.104 0.896 50 H 0.109 0.891 51 H 0.081 0.919 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -2.552 -10.182 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.511 4.511 3 Si 1.247 2.753 4 C -0.501 4.501 5 C -0.208 4.208 6 C -0.524 4.524 7 C -0.006 4.006 8 N -0.336 5.336 9 C 0.294 3.706 10 O -0.450 6.450 11 C -0.045 4.045 12 O -0.219 6.219 13 C 0.100 3.900 14 C -0.213 4.213 15 C -0.044 4.044 16 C -0.152 4.152 17 C -0.169 4.169 18 O -0.353 6.353 19 Si 0.777 3.223 20 H -0.181 1.181 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.088 4.088 24 C -0.222 4.222 25 Br 0.030 6.970 26 C -0.022 4.022 27 C -0.514 4.514 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.119 0.881 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.192 0.808 45 H 0.182 0.818 46 H 0.155 0.845 47 H 0.239 0.761 48 H 0.151 0.849 49 H 0.123 0.877 50 H 0.127 0.873 51 H 0.099 0.901 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.473 -1.654 -8.520 9.025 hybrid contribution -0.854 -0.382 0.375 1.008 sum 1.619 -2.036 -8.146 8.551 Atomic orbital electron populations 1.21419 0.95790 1.01624 1.02086 1.26203 1.00470 1.19896 1.04500 0.78705 0.66987 0.65116 0.64473 1.26055 1.05290 1.07108 1.11618 1.21432 1.01845 1.00322 0.97181 1.27002 1.04751 1.04077 1.16616 1.21227 0.78519 0.97331 1.03483 1.48054 1.09714 1.66659 1.09172 1.20612 0.89111 0.77313 0.83601 1.90760 1.72108 1.47705 1.34379 1.22954 0.91755 1.05858 0.83918 1.86250 1.21048 1.83087 1.31478 1.18824 0.83280 0.94716 0.93170 1.21652 0.95016 1.05634 0.98967 1.21252 0.93853 0.92428 0.96872 1.20347 0.97021 1.04016 0.93842 1.24674 0.92766 0.87260 1.12189 1.86494 1.69581 1.14327 1.64906 0.85654 0.79907 0.80723 0.75991 1.18132 1.19246 1.18552 1.20939 0.90808 0.97144 0.99881 1.21119 0.95207 1.13862 0.91982 1.96760 1.69534 1.89344 1.41365 1.21914 0.98466 0.95992 0.85800 1.26761 1.20145 0.98205 1.06310 0.91801 0.93665 0.92784 0.90086 0.91606 0.91139 0.90031 0.90957 0.92624 0.93546 0.92438 0.89305 0.91989 0.88138 0.85157 0.85458 0.80778 0.81754 0.84456 0.76143 0.84906 0.87739 0.87255 0.90067 0.86680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.36 9.29 71.98 0.67 1.03 16 2 C -0.43 1.89 5.17 71.98 0.37 2.26 16 3 Si 1.06 -8.68 8.66 68.60 0.59 -8.09 16 4 C -0.41 3.27 5.17 71.98 0.37 3.64 16 5 C -0.15 1.15 9.29 71.98 0.67 1.82 16 6 C -0.44 0.91 5.22 72.26 0.38 1.28 16 7 C 0.12 -0.05 5.87 86.69 0.51 0.46 16 8 N -0.60 1.41 2.61 -818.62 -2.13 -0.73 16 9 C 0.51 2.23 7.72 87.66 0.68 2.91 16 10 O -0.57 -9.33 15.78 16.01 0.25 -9.08 16 11 C 0.03 -0.09 3.53 71.24 0.25 0.16 16 12 O -0.31 -1.92 9.01 -73.66 -0.66 -2.58 16 13 C 0.15 0.47 6.68 22.52 0.15 0.62 16 14 C -0.19 0.88 9.04 22.36 0.20 1.08 16 15 C -0.03 0.13 9.60 22.26 0.21 0.34 16 16 C -0.15 0.31 5.39 -19.85 -0.11 0.20 16 17 C -0.06 0.23 2.82 71.23 0.20 0.43 16 18 O -0.55 1.93 12.77 -148.98 -1.90 0.03 16 19 Si 0.95 -0.93 25.07 68.60 1.72 0.79 16 20 H -0.26 -0.11 7.11 99.48 0.71 0.60 16 21 H -0.27 -0.53 7.11 99.48 0.71 0.18 16 22 H -0.26 -0.33 7.11 99.48 0.71 0.38 16 23 C -0.07 -0.17 8.40 22.27 0.19 0.01 16 24 C -0.14 -0.88 6.24 22.40 0.14 -0.74 16 25 Br -0.06 -0.57 33.16 -20.37 -0.68 -1.24 16 26 C 0.10 -1.09 5.78 86.87 0.50 -0.58 16 27 C -0.43 4.79 5.24 72.43 0.38 5.17 16 28 H 0.06 -0.26 8.03 -2.39 -0.02 -0.28 16 29 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.05 -0.12 7.88 -2.39 -0.02 -0.14 16 31 H 0.08 -0.45 7.79 -2.39 -0.02 -0.47 16 32 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 33 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 34 H 0.08 -0.75 7.96 -2.39 -0.02 -0.76 16 35 H 0.07 -0.79 7.50 -2.39 -0.02 -0.80 16 36 H 0.05 -0.41 7.76 -2.39 -0.02 -0.43 16 37 H 0.05 -0.26 8.14 -2.39 -0.02 -0.28 16 38 H 0.06 0.14 7.99 -2.39 -0.02 0.12 16 39 H 0.09 -0.26 7.99 -2.39 -0.02 -0.28 16 40 H 0.06 0.40 6.91 -2.39 -0.02 0.39 16 41 H 0.10 -0.57 8.05 -2.38 -0.02 -0.59 16 42 H 0.13 -1.31 7.02 -2.39 -0.02 -1.33 16 43 H 0.13 -1.18 7.50 -2.39 -0.02 -1.20 16 44 H 0.17 -2.15 6.30 -2.91 -0.02 -2.17 16 45 H 0.16 -1.59 8.06 -2.91 -0.02 -1.62 16 46 H 0.14 -0.97 7.96 -2.39 -0.02 -0.99 16 47 H 0.39 -3.48 8.70 -74.06 -0.64 -4.13 16 48 H 0.13 0.27 4.87 -2.91 -0.01 0.25 16 49 H 0.10 -1.50 8.05 -2.39 -0.02 -1.52 16 50 H 0.11 -1.73 5.77 -2.39 -0.01 -1.74 16 51 H 0.08 -0.82 7.99 -2.39 -0.02 -0.84 16 52 H 0.11 -1.72 7.49 -2.39 -0.02 -1.73 16 Total: 0.00 -24.91 428.60 3.99 -20.92 By element: Atomic # 1 Polarization: -21.14 SS G_CDS: 1.03 Total: -20.11 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: 5.76 Total: 20.09 kcal Atomic # 7 Polarization: 1.41 SS G_CDS: -2.13 Total: -0.73 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -2.31 Total: -11.64 kcal Atomic # 14 Polarization: -9.61 SS G_CDS: 2.31 Total: -7.30 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -0.68 Total: -1.24 kcal Total: -24.91 3.99 -20.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17051536_6201210.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.742 kcal (2) G-P(sol) polarization free energy of solvation -24.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds