Wall clock time and date at job start Sun Mar 7 2021 11:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 117.00236 * 2 1 4 4 C 1.39154 * 120.07807 * 179.97438 * 3 2 1 5 5 O 1.35992 * 120.07051 * 0.02562 * 4 3 2 6 6 C 1.42900 * 117.00153 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.47587 * 180.02562 * 6 5 4 8 8 O 1.21293 * 119.99728 * 359.97438 * 7 6 5 9 9 N 1.34768 * 120.00202 * 180.02562 * 7 6 5 10 10 C 1.47129 * 125.59433 * 0.02562 * 9 7 6 11 11 C 1.54582 * 107.36282 * 180.93882 * 10 9 7 12 12 C 1.53751 * 102.74928 * 20.84653 * 11 10 9 13 13 C 1.52307 * 116.26368 * 197.34738 * 12 11 10 14 14 C 1.54054 * 86.60918 * 216.60229 * 13 12 11 15 15 O 1.42903 * 113.56980 * 269.70006 * 14 13 12 16 16 C 1.52308 * 116.25764 * 95.00145 * 12 11 10 17 17 C 1.47711 * 125.59228 * 179.72014 * 9 7 6 18 18 C 1.38563 * 119.85258 * 180.02562 * 4 3 2 19 19 C 1.38236 * 120.00420 * 0.02562 * 18 4 3 20 20 C 1.38261 * 120.14487 * 0.02562 * 19 18 4 21 21 C 1.50699 * 119.92587 * 179.97438 * 20 19 18 22 22 O 1.42892 * 109.47249 * 120.00208 * 21 20 19 23 23 Si 1.86298 * 109.47032 * 359.97438 * 21 20 19 24 24 C 1.38237 * 120.14345 * 0.23650 * 20 19 18 25 25 H 1.09004 * 109.46955 * 60.00281 * 1 2 3 26 26 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 27 27 H 1.08989 * 109.47415 * 299.99766 * 1 2 3 28 28 H 1.09000 * 109.46928 * 300.00722 * 6 5 4 29 29 H 1.08998 * 109.46806 * 60.00203 * 6 5 4 30 30 H 1.08997 * 109.86964 * 300.38586 * 10 9 7 31 31 H 1.08997 * 109.86287 * 61.49551 * 10 9 7 32 32 H 1.09002 * 110.75692 * 139.15921 * 11 10 9 33 33 H 1.09001 * 110.75582 * 262.34689 * 11 10 9 34 34 H 1.09001 * 113.69161 * 331.02631 * 13 12 11 35 35 H 1.09002 * 113.69291 * 102.18032 * 13 12 11 36 36 H 1.09005 * 113.63758 * 138.95530 * 14 13 12 37 37 H 0.96705 * 113.99626 * 277.79919 * 15 14 13 38 38 H 1.09002 * 113.69410 * 257.83005 * 16 12 11 39 39 H 1.09001 * 113.69049 * 28.88061 * 16 12 11 40 40 H 1.08999 * 110.39590 * 276.22964 * 17 9 7 41 41 H 1.09000 * 110.39754 * 38.63000 * 17 9 7 42 42 H 1.08000 * 119.99665 * 179.97438 * 18 4 3 43 43 H 1.07997 * 119.93023 * 180.02562 * 19 18 4 44 44 H 1.09004 * 109.46453 * 240.00276 * 21 20 19 45 45 H 0.96703 * 114.00176 * 299.99748 * 22 21 20 46 46 H 1.48506 * 109.99834 * 58.68765 * 23 21 20 47 47 H 1.48502 * 110.00011 * 180.02562 * 23 21 20 48 48 H 1.08001 * 119.99652 * 179.74952 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1795 0.1477 0.0005 6 6 5.6003 0.3007 0.0005 7 6 6.2519 -1.0581 -0.0001 8 8 5.5670 -2.0591 0.0000 9 7 7.5957 -1.1610 0.0003 10 6 8.5409 -0.0336 0.0019 11 6 9.9678 -0.6278 -0.0224 12 6 9.7356 -2.0457 -0.5697 13 6 10.8610 -3.0472 -0.3460 14 6 10.5135 -3.6100 -1.7373 15 8 9.5400 -4.6555 -1.7039 16 6 9.9213 -2.2274 -2.0705 17 6 8.3611 -2.4244 0.0057 18 6 4.0602 2.5234 0.0011 19 6 3.3029 3.6799 0.0016 20 6 1.9223 3.6057 0.0021 21 6 1.1015 4.8696 0.0033 22 8 0.2766 4.9030 -1.1630 23 14 2.2364 6.3470 0.0046 24 6 1.2932 2.3748 0.0071 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8899 28 1 5.9065 0.8506 -0.8894 29 1 5.9065 0.8504 0.8905 30 1 8.3819 0.5844 -0.8818 31 1 8.4036 0.5636 0.9034 32 1 10.6128 -0.0567 -0.6902 33 1 10.3888 -0.6627 0.9824 34 1 11.8494 -2.5907 -0.2926 35 1 10.6703 -3.7455 0.4690 36 1 11.3877 -3.8654 -2.3362 37 1 9.9051 -5.5264 -1.4953 38 1 8.9842 -2.2745 -2.6253 39 1 10.6401 -1.5357 -2.5098 40 1 8.4631 -2.8024 1.0229 41 1 7.8754 -3.1655 -0.6290 42 1 5.1385 2.5841 0.0019 43 1 3.7907 4.6434 0.0016 44 1 0.4731 4.8938 0.8937 45 1 0.7701 4.8840 -1.9944 46 1 3.1209 6.3090 -1.1878 47 1 1.4391 7.5999 0.0063 48 1 0.2146 2.3197 0.0116 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058092_60476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 11:23:16 Heat of formation + Delta-G solvation = -115.747818 kcal Electronic energy + Delta-G solvation = -31163.828637 eV Core-core repulsion = 26766.806669 eV Total energy + Delta-G solvation = -4397.021968 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.00610 -41.65436 -40.42299 -39.29010 -38.93759 -37.62630 -37.03326 -35.36770 -32.18664 -31.59359 -31.34910 -30.28092 -28.58782 -28.11270 -26.84247 -26.19107 -24.73258 -23.41071 -22.61456 -22.51566 -20.61256 -19.86118 -19.81084 -18.58617 -18.45195 -18.08906 -17.82758 -17.59189 -17.29671 -16.98897 -16.62526 -16.27016 -16.14659 -15.98632 -15.82609 -15.78689 -15.52329 -15.20766 -14.93718 -14.47083 -14.36699 -14.15471 -13.92774 -13.69168 -13.59989 -13.55176 -13.46467 -13.03656 -12.77859 -12.62129 -12.59506 -12.46117 -12.22341 -12.17458 -12.02516 -11.78064 -11.65668 -11.48274 -11.20942 -11.05372 -10.62809 -10.58234 -9.80580 -9.79814 -8.94739 -4.88255 0.14422 0.25881 1.33230 1.33734 1.36637 1.64650 2.00066 2.28959 2.40902 2.53597 3.11348 3.25130 3.39155 3.41141 3.46994 3.63170 3.64963 3.81995 3.82717 3.84378 3.95707 3.98765 4.01046 4.11510 4.23257 4.26193 4.28538 4.33935 4.35144 4.47812 4.56229 4.60828 4.63353 4.63792 4.70632 4.78155 4.82960 4.88757 4.95373 4.98925 5.02976 5.10575 5.11337 5.24713 5.29717 5.32692 5.34675 5.57845 5.94024 6.30948 6.48587 6.49503 6.87276 6.94544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.076 3.924 4 C 0.083 3.917 5 O -0.317 6.317 6 C 0.047 3.953 7 C 0.520 3.480 8 O -0.580 6.580 9 N -0.614 5.614 10 C 0.085 3.915 11 C -0.112 4.112 12 C -0.088 4.088 13 C -0.143 4.143 14 C 0.068 3.932 15 O -0.578 6.578 16 C -0.121 4.121 17 C 0.130 3.870 18 C -0.159 4.159 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.086 4.086 22 O -0.550 6.550 23 Si 0.778 3.222 24 C -0.151 4.151 25 H 0.063 0.937 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.396 0.604 38 H 0.049 0.951 39 H 0.125 0.875 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.174 0.826 43 H 0.161 0.839 44 H 0.123 0.877 45 H 0.386 0.614 46 H -0.275 1.275 47 H -0.307 1.307 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.236 6.056 1.713 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.031 3.969 4 C 0.037 3.963 5 O -0.230 6.230 6 C -0.031 4.031 7 C 0.309 3.691 8 O -0.459 6.459 9 N -0.349 5.349 10 C -0.036 4.036 11 C -0.149 4.149 12 C -0.089 4.089 13 C -0.181 4.181 14 C 0.009 3.991 15 O -0.386 6.386 16 C -0.158 4.158 17 C 0.008 3.992 18 C -0.177 4.177 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.194 4.194 22 O -0.359 6.359 23 Si 0.683 3.317 24 C -0.170 4.170 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.128 0.872 33 H 0.110 0.890 34 H 0.138 0.862 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.246 0.754 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.192 0.808 43 H 0.178 0.822 44 H 0.141 0.859 45 H 0.235 0.765 46 H -0.201 1.201 47 H -0.235 1.235 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.182 6.350 1.596 11.278 hybrid contribution -0.779 -1.314 -1.010 1.832 sum 8.403 5.035 0.585 9.814 Atomic orbital electron populations 1.23284 0.76770 1.05178 1.02151 1.86196 1.23058 1.26719 1.89100 1.18689 0.89854 0.85680 1.02725 1.18635 0.88236 0.86489 1.02920 1.86221 1.18091 1.29387 1.89341 1.22656 0.79290 0.94466 1.06673 1.20331 0.81390 0.91121 0.76304 1.90767 1.63381 1.40555 1.51214 1.48555 1.04007 1.09991 1.72302 1.22585 0.88635 0.88305 1.04123 1.22535 0.95194 0.93624 1.03581 1.21833 0.93563 0.96984 0.96475 1.23406 0.98841 0.97904 0.97942 1.23017 0.91246 0.87965 0.96841 1.86476 1.37692 1.20762 1.93666 1.22992 1.01730 0.96027 0.95047 1.21831 0.90916 0.86103 1.00322 1.21364 1.02222 0.89302 1.04854 1.21010 0.92376 0.98939 1.00198 1.20150 0.94465 0.94716 1.02255 1.25337 1.00724 1.02287 0.91023 1.86564 1.36783 1.95820 1.16695 0.93999 0.78043 0.72201 0.87495 1.21011 1.00518 0.90469 1.04956 0.91884 0.87185 0.91491 0.85934 0.85407 0.89058 0.88595 0.87152 0.88960 0.86206 0.90895 0.89734 0.75429 0.93243 0.85718 0.91626 0.92782 0.80828 0.82191 0.85935 0.76460 1.20085 1.23522 0.84019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 113.37 1.11 1.19 16 2 O -0.34 -4.36 10.28 -79.65 -0.82 -5.18 16 3 C 0.08 0.73 6.70 22.57 0.15 0.88 16 4 C 0.08 0.61 6.70 22.57 0.15 0.76 16 5 O -0.32 -3.72 9.45 -67.05 -0.63 -4.35 16 6 C 0.05 0.08 4.41 71.23 0.31 0.39 16 7 C 0.52 5.06 7.93 87.66 0.69 5.75 16 8 O -0.58 -13.07 16.78 15.97 0.27 -12.80 16 9 N -0.61 -1.73 3.34 -812.59 -2.71 -4.44 16 10 C 0.08 -0.66 6.50 86.80 0.56 -0.09 16 11 C -0.11 1.06 6.34 31.39 0.20 1.26 16 12 C -0.09 0.32 0.92 -52.17 -0.05 0.27 16 13 C -0.14 0.86 7.28 30.72 0.22 1.08 16 14 C 0.07 -0.19 5.27 31.28 0.16 -0.03 16 15 O -0.58 -1.36 12.50 -148.98 -1.86 -3.22 16 16 C -0.12 0.33 7.23 30.72 0.22 0.55 16 17 C 0.13 0.58 5.97 86.40 0.52 1.10 16 18 C -0.16 0.21 9.04 22.35 0.20 0.41 16 19 C -0.11 0.29 8.66 22.27 0.19 0.48 16 20 C -0.12 -0.07 5.39 -19.86 -0.11 -0.17 16 21 C -0.09 0.09 2.82 71.24 0.20 0.30 16 22 O -0.55 -1.32 12.77 -148.98 -1.90 -3.22 16 23 Si 0.78 -3.09 29.78 68.60 2.04 -1.04 16 24 C -0.15 -0.71 8.60 22.35 0.19 -0.52 16 25 H 0.06 0.11 7.68 -2.39 -0.02 0.09 16 26 H 0.11 0.15 8.14 -2.38 -0.02 0.13 16 27 H 0.07 0.07 7.65 -2.39 -0.02 0.05 16 28 H 0.12 -0.63 7.66 -2.39 -0.02 -0.65 16 29 H 0.13 -0.76 7.66 -2.39 -0.02 -0.78 16 30 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 32 H 0.11 -1.49 7.99 -2.39 -0.02 -1.51 16 33 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 35 H 0.07 -0.31 8.12 -2.39 -0.02 -0.33 16 36 H 0.08 -0.52 8.14 -2.38 -0.02 -0.54 16 37 H 0.40 -2.23 9.12 -74.05 -0.68 -2.91 16 38 H 0.05 0.18 8.13 -2.39 -0.02 0.16 16 39 H 0.12 -1.02 8.05 -2.39 -0.02 -1.04 16 40 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.05 0.67 7.15 -2.39 -0.02 0.65 16 42 H 0.17 -1.64 6.30 -2.91 -0.02 -1.65 16 43 H 0.16 -1.39 4.87 -2.91 -0.01 -1.41 16 44 H 0.12 -0.28 7.96 -2.38 -0.02 -0.30 16 45 H 0.39 -1.20 8.70 -74.06 -0.64 -1.85 16 46 H -0.27 0.35 7.11 99.48 0.71 1.06 16 47 H -0.31 -1.35 7.11 99.48 0.71 -0.64 16 48 H 0.14 0.45 6.30 -2.91 -0.02 0.43 16 Total: 0.00 -34.87 389.02 -0.95 -35.82 By element: Atomic # 1 Polarization: -14.92 SS G_CDS: -0.28 Total: -15.19 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 4.95 Total: 13.63 kcal Atomic # 7 Polarization: -1.73 SS G_CDS: -2.71 Total: -4.44 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -4.95 Total: -28.78 kcal Atomic # 14 Polarization: -3.09 SS G_CDS: 2.04 Total: -1.04 kcal Total: -34.87 -0.95 -35.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058092_60476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.925 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds