Wall clock time and date at job start Sun Mar 7 2021 06:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37654 * 125.67739 * 2 1 4 4 C 1.46679 * 126.23284 * 359.97438 * 3 2 1 5 5 O 1.21694 * 120.00146 * 4.69363 * 4 3 2 6 6 N 1.34780 * 119.99977 * 184.68377 * 4 3 2 7 7 C 1.46504 * 119.99843 * 184.87070 * 6 4 3 8 8 H 1.09001 * 112.84911 * 52.39290 * 7 6 4 9 9 C 1.53775 * 113.61077 * 183.58575 * 7 6 4 10 10 C 1.53958 * 87.01943 * 89.23364 * 9 7 6 11 11 C 1.52998 * 113.61269 * 270.79836 * 10 9 7 12 12 C 1.52999 * 113.66667 * 139.93166 * 10 9 7 13 13 O 1.42903 * 109.47264 * 82.44268 * 12 10 9 14 14 C 1.53774 * 113.61584 * 281.19475 * 7 6 4 15 15 C 1.37870 * 107.53366 * 179.73725 * 3 2 1 16 16 C 1.39837 * 107.08519 * 0.22541 * 15 3 2 17 17 C 1.35459 * 107.86516 * 359.97438 * 16 15 3 18 18 C 1.50693 * 125.56615 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47379 * 149.97609 * 18 17 16 20 20 Si 1.86303 * 109.47120 * 29.97336 * 18 17 16 21 21 H 1.08996 * 109.46696 * 88.33930 * 1 2 3 22 22 H 1.08991 * 109.46885 * 208.34406 * 1 2 3 23 23 H 1.09006 * 109.46711 * 328.33854 * 1 2 3 24 24 H 0.96996 * 119.99564 * 4.88023 * 6 4 3 25 25 H 1.09000 * 113.61306 * 203.75075 * 9 7 6 26 26 H 1.08999 * 113.62072 * 334.65636 * 9 7 6 27 27 H 1.08994 * 109.47502 * 164.22384 * 11 10 9 28 28 H 1.09002 * 109.47610 * 284.23007 * 11 10 9 29 29 H 1.09007 * 109.47196 * 44.22375 * 11 10 9 30 30 H 1.09004 * 109.46628 * 202.44209 * 12 10 9 31 31 H 1.09000 * 109.47137 * 322.44011 * 12 10 9 32 32 H 0.96700 * 113.99833 * 179.97438 * 13 12 10 33 33 H 1.09005 * 113.61683 * 25.35061 * 14 7 6 34 34 H 1.09001 * 113.61445 * 156.25591 * 14 7 6 35 35 H 1.07998 * 126.45800 * 180.18045 * 15 3 2 36 36 H 1.08001 * 126.06862 * 180.02562 * 16 15 3 37 37 H 1.09004 * 109.47134 * 269.98040 * 18 17 16 38 38 H 0.96708 * 113.99700 * 300.00186 * 19 18 17 39 39 H 1.48502 * 109.99809 * 58.68008 * 20 18 17 40 40 H 1.48500 * 110.00136 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2679 1.1182 0.0000 4 6 1.8124 2.5125 -0.0005 5 8 0.6250 2.7648 0.0852 6 7 2.7090 3.5142 -0.0958 7 6 2.2658 4.9066 0.0109 8 1 1.6713 5.0942 0.9050 9 6 3.3930 5.9300 -0.2053 10 6 3.0422 5.8795 -1.7036 11 6 3.8040 4.8003 -2.4754 12 6 3.0875 7.2455 -2.3913 13 8 4.4364 7.5551 -2.7473 14 6 1.6280 5.4505 -1.2783 15 6 3.5780 0.6889 0.0060 16 6 3.5522 -0.7093 0.0044 17 6 2.2555 -1.1009 -0.0018 18 6 1.7709 -2.5278 -0.0050 19 8 0.5101 -2.6042 0.6632 20 14 3.0078 -3.6057 0.8776 21 1 -0.3632 0.0298 -1.0272 22 1 -0.3633 -0.9044 0.4879 23 1 -0.3633 0.8748 0.5395 24 1 3.6477 3.3133 -0.2351 25 1 3.1982 6.8980 0.2563 26 1 4.3852 5.5421 0.0250 27 1 3.3195 4.6307 -3.4369 28 1 4.8311 5.1268 -2.6386 29 1 3.8043 3.8742 -1.9003 30 1 2.4711 7.2203 -3.2900 31 1 2.7071 8.0076 -1.7111 32 1 4.5404 8.4090 -3.1890 33 1 1.1974 4.6759 -1.9129 34 1 0.9499 6.2872 -1.1106 35 1 4.4583 1.3145 0.0104 36 1 4.4133 -1.3611 0.0084 37 1 1.6585 -2.8711 -1.0335 38 1 0.5354 -2.3134 1.5852 39 1 3.1940 -3.1286 2.2715 40 1 2.5412 -5.0155 0.8819 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_10803936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:17 Heat of formation + Delta-G solvation = -32.581778 kcal Electronic energy + Delta-G solvation = -22744.679521 eV Core-core repulsion = 19335.192276 eV Total energy + Delta-G solvation = -3409.487245 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65291 -41.51619 -39.51950 -37.96870 -37.22393 -34.82516 -33.65093 -31.54354 -30.30125 -27.76468 -27.48611 -26.83154 -26.69100 -23.74614 -22.47198 -21.34938 -20.59969 -19.57414 -18.85222 -18.22473 -18.16555 -17.35250 -16.98180 -16.52052 -16.30563 -15.96956 -15.83672 -15.44656 -15.13621 -14.93087 -14.54456 -14.43392 -14.27471 -14.18230 -13.82118 -13.48162 -13.29915 -13.20871 -13.07240 -12.94581 -12.39686 -12.36531 -11.95312 -11.87135 -11.51310 -11.31936 -11.16932 -10.82044 -10.78374 -10.09461 -9.75683 -9.10887 -4.87166 0.34188 1.17158 1.52246 1.73269 1.75994 2.01046 2.30001 2.31564 3.12257 3.17932 3.45277 3.52527 3.55971 3.67028 3.78943 3.97629 4.04380 4.19443 4.26826 4.34690 4.45669 4.48475 4.53160 4.54293 4.59474 4.69359 4.73035 4.80319 4.86557 4.92193 5.00682 5.08235 5.12066 5.17357 5.18554 5.33290 5.56182 5.72000 5.97169 6.12414 6.27756 6.43396 6.91058 7.09491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.406 5.406 3 C -0.086 4.086 4 C 0.586 3.414 5 O -0.583 6.583 6 N -0.688 5.688 7 C 0.122 3.878 8 H 0.083 0.917 9 C -0.116 4.116 10 C -0.083 4.083 11 C -0.125 4.125 12 C 0.089 3.911 13 O -0.587 6.587 14 C -0.136 4.136 15 C -0.127 4.127 16 C -0.200 4.200 17 C 0.007 3.993 18 C -0.067 4.067 19 O -0.546 6.546 20 Si 0.817 3.183 21 H 0.065 0.935 22 H 0.118 0.882 23 H 0.081 0.919 24 H 0.415 0.585 25 H 0.110 0.890 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.394 0.606 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.173 0.827 36 H 0.185 0.815 37 H 0.132 0.868 38 H 0.387 0.613 39 H -0.291 1.291 40 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.289 1.004 -0.705 5.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.079 5.079 3 C -0.199 4.199 4 C 0.376 3.624 5 O -0.465 6.465 6 N -0.341 5.341 7 C 0.017 3.983 8 H 0.101 0.899 9 C -0.154 4.154 10 C -0.083 4.083 11 C -0.182 4.182 12 C 0.011 3.989 13 O -0.395 6.395 14 C -0.174 4.174 15 C -0.153 4.153 16 C -0.224 4.224 17 C -0.111 4.111 18 C -0.175 4.175 19 O -0.354 6.354 20 Si 0.720 3.280 21 H 0.084 0.916 22 H 0.136 0.864 23 H 0.100 0.900 24 H 0.255 0.745 25 H 0.128 0.872 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.244 0.756 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.190 0.810 36 H 0.202 0.798 37 H 0.150 0.850 38 H 0.237 0.763 39 H -0.217 1.217 40 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 4.104 -0.081 -0.274 4.114 hybrid contribution -1.216 1.085 0.171 1.639 sum 2.888 1.004 -0.103 3.059 Atomic orbital electron populations 1.22547 0.76085 1.06044 1.03850 1.43909 1.07031 1.04621 1.52382 1.20223 0.91624 0.87233 1.20821 1.17224 0.85297 0.84286 0.75618 1.90774 1.17729 1.85415 1.52612 1.45442 1.11194 1.04573 1.72894 1.21822 0.98020 0.80191 0.98229 0.89904 1.23346 0.98175 0.99091 0.94760 1.21934 0.95881 0.95120 0.95377 1.21571 1.00276 0.97203 0.99199 1.22147 0.83285 0.95266 0.98160 1.86427 1.27516 1.43720 1.81827 1.23377 0.96092 1.00882 0.97092 1.21714 0.94228 0.95980 1.03414 1.21011 0.95442 0.95446 1.10475 1.21470 0.91554 0.89282 1.08802 1.25283 0.93217 0.94150 1.04824 1.86538 1.30589 1.88271 1.30038 0.93270 0.82882 0.73258 0.78607 0.91595 0.86376 0.90000 0.74505 0.87188 0.89582 0.93541 0.91638 0.91800 0.93734 0.92180 0.75619 0.92797 0.88142 0.80974 0.79751 0.85044 0.76331 1.21733 1.22403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.30 10.29 127.77 1.31 1.61 16 2 N -0.41 -2.29 3.16 -519.71 -1.64 -3.93 16 3 C -0.09 -0.49 6.89 40.35 0.28 -0.21 16 4 C 0.59 4.54 7.75 86.45 0.67 5.21 16 5 O -0.58 -8.60 14.65 -4.33 -0.06 -8.67 16 6 N -0.69 -0.83 4.05 -444.00 -1.80 -2.63 16 7 C 0.12 0.10 3.97 45.51 0.18 0.28 16 8 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 9 C -0.12 0.35 6.95 31.18 0.22 0.57 16 10 C -0.08 0.07 1.19 -51.60 -0.06 0.00 16 11 C -0.13 -0.04 8.83 71.98 0.64 0.59 16 12 C 0.09 -0.16 6.52 71.98 0.47 0.31 16 13 O -0.59 0.32 12.75 -148.98 -1.90 -1.58 16 14 C -0.14 -0.20 6.97 31.12 0.22 0.01 16 15 C -0.13 0.02 10.35 22.57 0.23 0.26 16 16 C -0.20 0.35 9.37 22.01 0.21 0.55 16 17 C 0.01 0.01 6.15 41.34 0.25 0.26 16 18 C -0.07 0.12 2.99 71.23 0.21 0.33 16 19 O -0.55 -0.33 9.97 -148.98 -1.48 -1.81 16 20 Si 0.82 -3.47 31.10 68.60 2.13 -1.33 16 21 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 22 H 0.12 0.24 4.96 -2.39 -0.01 0.23 16 23 H 0.08 0.73 6.32 -2.38 -0.02 0.71 16 24 H 0.42 -1.55 6.08 -92.71 -0.56 -2.11 16 25 H 0.11 -0.55 7.97 -2.39 -0.02 -0.57 16 26 H 0.09 -0.36 8.07 -2.39 -0.02 -0.38 16 27 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.06 0.09 7.53 -2.39 -0.02 0.08 16 29 H 0.06 -0.08 5.01 -2.38 -0.01 -0.09 16 30 H 0.04 -0.08 8.14 -2.38 -0.02 -0.10 16 31 H 0.06 -0.26 7.95 -2.39 -0.02 -0.28 16 32 H 0.39 -3.25 9.12 -74.06 -0.68 -3.93 16 33 H 0.05 0.34 8.10 -2.38 -0.02 0.33 16 34 H 0.10 -0.05 8.10 -2.39 -0.02 -0.07 16 35 H 0.17 -1.14 7.48 -2.91 -0.02 -1.16 16 36 H 0.19 -1.65 6.85 -2.91 -0.02 -1.67 16 37 H 0.13 -0.45 7.96 -2.38 -0.02 -0.47 16 38 H 0.39 -1.49 8.40 -74.05 -0.62 -2.11 16 39 H -0.29 -0.42 7.11 99.48 0.71 0.29 16 40 H -0.30 -0.82 7.11 99.48 0.71 -0.11 16 Total: 0.00 -20.23 320.59 -0.67 -20.90 By element: Atomic # 1 Polarization: -10.00 SS G_CDS: -0.74 Total: -10.74 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: 4.83 Total: 9.79 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -3.44 Total: -6.56 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -3.45 Total: -12.06 kcal Atomic # 14 Polarization: -3.47 SS G_CDS: 2.13 Total: -1.33 kcal Total: -20.23 -0.67 -20.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_10803936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.679 kcal (2) G-P(sol) polarization free energy of solvation -20.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds