Wall clock time and date at job start Sun Mar 7 2021 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35445 * 125.56555 * 2 1 4 4 C 1.50708 * 126.06736 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.46825 * 124.03629 * 4 3 2 6 6 Si 1.86294 * 109.47266 * 244.03874 * 4 3 2 7 7 C 1.39832 * 107.86547 * 179.70602 * 3 2 1 8 8 C 1.50703 * 126.45895 * 180.29760 * 7 3 2 9 9 C 1.37862 * 107.08654 * 0.41803 * 7 3 2 10 10 C 1.46680 * 126.23720 * 179.85247 * 9 7 3 11 11 O 1.21692 * 119.99963 * 359.70979 * 10 9 7 12 12 N 1.34782 * 120.00352 * 179.71402 * 10 9 7 13 13 C 1.46491 * 120.00082 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.90993 * 307.80060 * 13 12 10 15 15 C 1.53777 * 113.62086 * 79.05554 * 13 12 10 16 16 C 1.53775 * 87.17217 * 89.15528 * 15 13 12 17 17 C 1.53006 * 113.61935 * 270.84370 * 16 15 13 18 18 C 1.53004 * 113.61432 * 139.94503 * 16 15 13 19 19 O 1.42903 * 109.47391 * 180.02562 * 18 16 15 20 20 C 1.53782 * 87.08183 * 25.39604 * 16 15 13 21 21 N 1.35534 * 125.56047 * 179.97438 * 2 1 3 22 22 H 1.08999 * 109.46891 * 274.80518 * 1 2 3 23 23 H 1.08999 * 109.47023 * 34.80847 * 1 2 3 24 24 H 1.09001 * 109.46906 * 154.80274 * 1 2 3 25 25 H 1.08997 * 109.46929 * 4.04298 * 4 3 2 26 26 H 0.96704 * 114.00329 * 180.02562 * 5 4 3 27 27 H 1.48501 * 110.00262 * 301.63972 * 6 4 3 28 28 H 1.48499 * 110.00058 * 62.95885 * 6 4 3 29 29 H 1.08990 * 109.47620 * 270.16418 * 8 7 3 30 30 H 1.09004 * 109.46576 * 30.16550 * 8 7 3 31 31 H 1.09002 * 109.46799 * 150.15962 * 8 7 3 32 32 H 0.97001 * 119.99532 * 359.97438 * 12 10 9 33 33 H 1.09013 * 113.61094 * 334.57024 * 15 13 12 34 34 H 1.08996 * 113.61921 * 203.75485 * 15 13 12 35 35 H 1.09001 * 109.46609 * 56.51268 * 17 16 15 36 36 H 1.08996 * 109.47006 * 176.51276 * 17 16 15 37 37 H 1.08999 * 109.46789 * 296.51592 * 17 16 15 38 38 H 1.09003 * 109.46959 * 300.00070 * 18 16 15 39 39 H 1.08998 * 109.47119 * 59.99506 * 18 16 15 40 40 H 0.96696 * 113.99893 * 179.97438 * 19 18 16 41 41 H 1.08997 * 113.61713 * 89.11194 * 20 16 15 42 42 H 1.09005 * 113.61104 * 219.93363 * 20 16 15 43 43 H 0.96998 * 125.68409 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 1.8200 2.5321 -0.0005 5 8 2.3852 3.2220 1.1159 6 14 2.3546 3.3633 -1.5797 7 6 3.6270 0.6767 0.0068 8 6 4.8486 1.5591 0.0156 9 6 3.6123 -0.7019 0.0013 10 6 4.7860 -1.5815 0.0022 11 8 5.9049 -1.1031 0.0031 12 7 4.6254 -2.9198 0.0021 13 6 5.7976 -3.7982 0.0025 14 1 6.5065 -3.5602 -0.7906 15 6 6.4506 -3.9537 1.3860 16 6 5.4985 -5.1388 1.6178 17 6 4.1591 -4.7368 2.2386 18 6 6.1550 -6.3217 2.3327 19 8 5.1964 -7.3681 2.5012 20 6 5.4468 -5.2948 0.0888 21 7 2.2953 -1.1026 0.0005 22 1 -0.3633 0.0861 1.0241 23 1 -0.3633 0.8438 -0.5866 24 1 -0.3633 -0.9299 -0.4375 25 1 0.7326 2.5539 0.0715 26 1 2.1217 4.1503 1.1792 27 1 3.8328 3.3053 -1.7091 28 1 1.7164 2.6992 -2.7445 29 1 5.1474 1.7763 -1.0098 30 1 4.6198 2.4911 0.5326 31 1 5.6621 1.0482 0.5306 32 1 3.7334 -3.3011 0.0017 33 1 6.2682 -3.1104 2.0522 34 1 7.5015 -4.2397 1.3433 35 1 3.6776 -3.9877 1.6100 36 1 3.5165 -5.6139 2.3157 37 1 4.3291 -4.3224 3.2324 38 1 6.9910 -6.6878 1.7368 39 1 6.5180 -6.0002 3.3089 40 1 5.5443 -8.1518 2.9482 41 1 6.2232 -5.9476 -0.3100 42 1 4.4543 -5.5356 -0.2922 43 1 1.9834 -2.0210 0.0006 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_17058578_12297754.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 06:38:23 Heat of formation + Delta-G solvation = -51.872582 kcal Electronic energy + Delta-G solvation = -24780.312184 eV Core-core repulsion = 21214.450808 eV Total energy + Delta-G solvation = -3565.861376 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.83532 -41.59835 -39.62779 -37.60528 -37.29789 -34.87775 -33.88807 -32.99414 -30.59645 -29.33979 -27.99779 -27.31844 -26.88972 -26.36187 -23.46761 -22.13279 -20.87505 -20.17562 -19.71917 -19.28259 -18.25252 -18.23588 -17.36795 -16.91036 -16.74756 -16.15556 -16.03912 -15.74838 -15.21854 -15.14631 -14.84224 -14.53892 -14.46581 -14.28985 -14.23832 -13.92560 -13.65847 -13.56498 -13.36529 -13.28092 -13.23161 -13.16143 -12.66374 -12.47609 -12.46821 -11.97440 -11.82407 -11.58742 -11.36839 -11.12060 -10.86854 -10.52257 -10.22513 -9.63202 -9.11526 -4.93551 0.21400 1.15265 1.57603 1.72159 1.79204 1.96084 2.09584 2.18478 3.10194 3.36177 3.45628 3.57042 3.59670 3.72603 3.78171 3.95419 3.99241 4.11009 4.14572 4.33159 4.38127 4.41269 4.46450 4.50719 4.52510 4.63270 4.66318 4.69474 4.70898 4.78263 4.82292 4.86678 4.88659 4.98350 5.03208 5.06867 5.09347 5.15795 5.24053 5.46237 5.55297 5.71083 6.21974 6.38536 6.85611 6.96344 7.06892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.093 3.907 3 C -0.202 4.202 4 C -0.024 4.024 5 O -0.563 6.563 6 Si 0.747 3.253 7 C -0.075 4.075 8 C -0.088 4.088 9 C -0.084 4.084 10 C 0.590 3.410 11 O -0.561 6.561 12 N -0.699 5.699 13 C 0.118 3.882 14 H 0.084 0.916 15 C -0.136 4.136 16 C -0.082 4.082 17 C -0.124 4.124 18 C 0.089 3.911 19 O -0.587 6.587 20 C -0.115 4.115 21 N -0.520 5.520 22 H 0.096 0.904 23 H 0.098 0.902 24 H 0.090 0.910 25 H 0.097 0.903 26 H 0.400 0.600 27 H -0.299 1.299 28 H -0.304 1.304 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.407 0.593 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.395 0.605 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.591 -2.030 0.540 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C -0.207 4.207 4 C -0.134 4.134 5 O -0.372 6.372 6 Si 0.654 3.346 7 C -0.083 4.083 8 C -0.145 4.145 9 C -0.195 4.195 10 C 0.379 3.621 11 O -0.439 6.439 12 N -0.353 5.353 13 C 0.014 3.986 14 H 0.102 0.898 15 C -0.175 4.175 16 C -0.083 4.083 17 C -0.181 4.181 18 C 0.012 3.988 19 O -0.395 6.395 20 C -0.153 4.153 21 N -0.119 5.119 22 H 0.115 0.885 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.115 0.885 26 H 0.251 0.749 27 H -0.226 1.226 28 H -0.232 1.232 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.245 0.755 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.245 0.755 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -5.501 -2.148 -0.422 5.920 hybrid contribution 0.332 -1.504 0.446 1.604 sum -5.169 -3.653 0.024 6.329 Atomic orbital electron populations 1.20700 0.84113 1.05489 1.04999 1.20863 0.95269 0.84763 1.01847 1.18898 0.92026 0.94759 1.15049 1.23895 1.00716 0.89905 0.98921 1.86470 1.74096 1.29272 1.47399 0.95824 0.78092 0.87042 0.73599 1.20022 0.95707 0.91739 1.00872 1.20363 0.94403 0.98763 1.00999 1.19984 0.83893 0.93746 1.21896 1.17117 0.87126 0.81983 0.75884 1.90811 1.25589 1.75762 1.51774 1.45646 1.10034 1.04532 1.75059 1.21888 0.87827 0.90764 0.98158 0.89814 1.23397 0.99994 0.97358 0.96735 1.21891 0.96486 0.94248 0.95636 1.21558 0.95442 1.01138 0.99954 1.22135 0.90561 0.87170 0.98958 1.86414 1.40796 1.29390 1.82944 1.23345 1.03944 0.92978 0.95021 1.41762 1.04165 1.09276 1.56715 0.88536 0.88353 0.89080 0.88483 0.74900 1.22642 1.23170 0.93136 0.90202 0.91801 0.75458 0.92715 0.87910 0.92300 0.91509 0.93388 0.92101 0.93588 0.75532 0.87115 0.89817 0.72689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.71 9.91 71.24 0.71 1.42 16 2 C 0.09 0.09 7.13 41.34 0.29 0.39 16 3 C -0.20 -1.30 4.50 -20.12 -0.09 -1.39 16 4 C -0.02 -0.02 2.76 71.24 0.20 0.18 16 5 O -0.56 -0.84 11.62 -148.98 -1.73 -2.57 16 6 Si 0.75 1.22 31.69 68.60 2.17 3.40 16 7 C -0.07 -0.88 5.86 -19.57 -0.11 -1.00 16 8 C -0.09 -1.23 8.14 71.24 0.58 -0.65 16 9 C -0.08 -0.72 7.06 40.35 0.28 -0.43 16 10 C 0.59 5.89 7.76 86.45 0.67 6.56 16 11 O -0.56 -9.98 14.80 -4.32 -0.06 -10.04 16 12 N -0.70 -1.51 4.14 -443.73 -1.84 -3.35 16 13 C 0.12 0.21 3.97 45.58 0.18 0.39 16 14 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 15 C -0.14 -0.29 7.01 31.12 0.22 -0.07 16 16 C -0.08 0.05 1.19 -51.65 -0.06 -0.01 16 17 C -0.12 -0.02 8.87 71.98 0.64 0.62 16 18 C 0.09 -0.16 6.52 71.98 0.47 0.31 16 19 O -0.59 0.36 12.70 -148.98 -1.89 -1.53 16 20 C -0.12 0.29 6.93 31.18 0.22 0.51 16 21 N -0.52 -0.20 5.99 -171.93 -1.03 -1.23 16 22 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 23 H 0.10 -0.88 7.39 -2.39 -0.02 -0.90 16 24 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 25 H 0.10 -0.52 6.74 -2.39 -0.02 -0.53 16 26 H 0.40 -3.71 8.74 -74.05 -0.65 -4.36 16 27 H -0.30 -3.14 5.89 99.48 0.59 -2.55 16 28 H -0.30 -2.39 7.11 99.48 0.71 -1.68 16 29 H 0.05 0.78 7.41 -2.39 -0.02 0.76 16 30 H 0.08 0.98 6.69 -2.38 -0.02 0.96 16 31 H 0.06 1.08 6.49 -2.39 -0.02 1.06 16 32 H 0.41 -1.49 6.19 -92.71 -0.57 -2.06 16 33 H 0.05 0.38 8.10 -2.38 -0.02 0.36 16 34 H 0.10 0.00 8.10 -2.39 -0.02 -0.02 16 35 H 0.06 -0.11 5.01 -2.39 -0.01 -0.12 16 36 H 0.07 0.08 7.43 -2.39 -0.02 0.06 16 37 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.06 -0.26 7.94 -2.39 -0.02 -0.28 16 39 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.40 -3.28 9.12 -74.06 -0.68 -3.96 16 41 H 0.11 -0.50 7.96 -2.39 -0.02 -0.52 16 42 H 0.08 -0.32 8.07 -2.38 -0.02 -0.34 16 43 H 0.43 -3.10 8.19 -92.71 -0.76 -3.86 16 Total: 0.00 -26.16 341.84 -1.86 -28.02 By element: Atomic # 1 Polarization: -17.85 SS G_CDS: -1.67 Total: -19.52 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.19 Total: 6.83 kcal Atomic # 7 Polarization: -1.71 SS G_CDS: -2.87 Total: -4.58 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -3.69 Total: -14.14 kcal Atomic # 14 Polarization: 1.22 SS G_CDS: 2.17 Total: 3.40 kcal Total: -26.16 -1.86 -28.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_17058578_12297754.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.855 kcal (2) G-P(sol) polarization free energy of solvation -26.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds